Commit Graph

130 Commits

Author SHA1 Message Date
dr. M.S. (Matthijs) Berends 01a6d56334 add kingdom to mo_taxonomy 2018-12-10 21:47:25 +01:00
dr. M.S. (Matthijs) Berends 9478ab71be freq - decimals 2018-12-10 10:13:40 +01:00
dr. M.S. (Matthijs) Berends 8e8a9cd190 AI improvements 2018-12-07 12:04:55 +01:00
dr. M.S. (Matthijs) Berends 87ad6da745 gitlab ci 2018-12-06 16:33:06 +01:00
dr. M.S. (Matthijs) Berends 74a7f4453b small CI fix 2018-12-06 16:07:06 +01:00
dr. M.S. (Matthijs) Berends 60fe98bbbd better as.mo handling 2018-12-06 14:36:39 +01:00
dr. M.S. (Matthijs) Berends 31e977937d fix for as.mo and freq 2018-11-30 12:05:59 +01:00
dr. M.S. (Matthijs) Berends 9ddf6dc530 support A. species for as.mo, cleanup 2018-11-24 20:25:09 +01:00
dr. M.S. (Matthijs) Berends a8132922af unit test read.4d, unselecting freq cols 2018-11-19 13:00:22 +01:00
dr. M.S. (Matthijs) Berends 373e0cb32f unit test fail 2018-11-16 21:57:55 +01:00
dr. M.S. (Matthijs) Berends 4fcc2b409a MDRO update 2018-11-16 20:50:50 +01:00
dr. M.S. (Matthijs) Berends 6b0f4ffbd4 new kingdom 2018-11-09 13:11:54 +01:00
dr. M.S. (Matthijs) Berends 9be5e0318b freq: fix na.rm in groups 2018-11-08 16:10:03 +01:00
dr. M.S. (Matthijs) Berends 84e08f516a grouping var for freq 2018-11-06 16:41:59 +01:00
dr. M.S. (Matthijs) Berends 54368fafef dont test french 2018-11-05 22:08:54 +01:00
dr. M.S. (Matthijs) Berends d15bb2ab3f read_4D 2018-11-05 15:30:49 +01:00
dr. M.S. (Matthijs) Berends d07e9b904e new function get_locale 2018-11-05 13:20:32 +01:00
dr. M.S. (Matthijs) Berends e548a7ad11 equal != identical 2018-11-02 15:04:48 +01:00
dr. M.S. (Matthijs) Berends d0bc05e5b1 speed improvement is.rsi.eligible 2018-11-02 14:55:29 +01:00
dr. M.S. (Matthijs) Berends 40a159e78d more unit tests 2018-11-02 10:27:57 +01:00
dr. M.S. (Matthijs) Berends 5476fecc73 eucast update 2018-11-01 20:23:33 +01:00
dr. M.S. (Matthijs) Berends 9cd4ab928a speed improvement as.mo, freq title 2018-10-31 12:10:49 +01:00
dr. M.S. (Matthijs) Berends 7997de6a6d mdro and 1st isolate improvements 2018-10-23 11:15:05 +02:00
dr. M.S. (Matthijs) Berends c2a93b46db breaks param, tidyr dep change, freq markdown 2018-10-22 12:32:59 +02:00
dr. M.S. (Matthijs) Berends 86b03577a7 fix for as.mo, added also_single_tested 2018-10-19 13:53:31 +02:00
dr. M.S. (Matthijs) Berends b464dd524a new verbose 2018-10-19 00:17:03 +02:00
dr. M.S. (Matthijs) Berends 693f64bdbf new EUCAST rules: clinical breakpoints 2018-10-17 17:32:34 +02:00
dr. M.S. (Matthijs) Berends d5a41de711 parameter combine_IR 2018-10-16 09:59:31 +02:00
dr. M.S. (Matthijs) Berends 5b5b95a47b count_all and some fixes 2018-10-12 16:35:18 +02:00
dr. M.S. (Matthijs) Berends 67521394f6 more unit tests 2018-10-09 15:41:44 +02:00
dr. M.S. (Matthijs) Berends 95c9fdc552 CRAN fixes for release 0.4.0
https://cran.r-project.org/web/checks/check_results_AMR.html
2018-10-09 13:53:33 +02:00
dr. M.S. (Matthijs) Berends ed17db0263 renamed year columns to ref 2018-10-01 14:44:40 +02:00
dr. M.S. (Matthijs) Berends 3119a221e5 authors from ITIS, diff for freq 2018-10-01 11:39:43 +02:00
dr. M.S. (Matthijs) Berends 92c9cc2608 diff for freq, fix for mo_shortname 2018-09-29 21:54:32 +02:00
dr. M.S. (Matthijs) Berends 768fe17324 removed clipboard functions as it violated CRAN policies 2018-09-28 16:05:18 +02:00
dr. M.S. (Matthijs) Berends 2b0080995e speed improvement for as.mo, more old taxonomic names 2018-09-27 23:23:48 +02:00
dr. M.S. (Matthijs) Berends 450992baea new: 1680 old taxonomic names 2018-09-25 16:44:40 +02:00
dr. M.S. (Matthijs) Berends da60f27877 travis cant find knitr vignette builder 2018-09-25 00:36:35 +02:00
dr. M.S. (Matthijs) Berends 9c566585b0 first inclusion of ITIS data 2018-09-24 23:33:29 +02:00
dr. M.S. (Matthijs) Berends df5d82fff3 unit tests 2018-09-17 21:51:21 +02:00
dr. M.S. (Matthijs) Berends 5d80cef338 added taxonomic data from ITIS 2018-09-17 20:53:32 +02:00
dr. M.S. (Matthijs) Berends 7680e4edd8 add shortest and longest to freq for characters 2018-09-17 09:42:09 +02:00
dr. M.S. (Matthijs) Berends db14781593 add labels_rsi_count 2018-09-16 22:11:17 +02:00
dr. M.S. (Matthijs) Berends b792a2754e added prevalence column and alterted as.mo algorith to use it, added ab_name as alias 2018-09-16 16:43:29 +02:00
dr. M.S. (Matthijs) Berends b0ca49d68d small improvement for is.rsi.eligible, more unit tests 2018-09-14 11:54:01 +02:00
dr. M.S. (Matthijs) Berends cb0d74a4f0 support for French and Italian, added quote to freq 2018-09-10 15:45:25 +02:00
dr. M.S. (Matthijs) Berends b83e6a9380 algoritm improvement, removed all Catabacter except for C. hongkongensis 2018-09-10 11:40:54 +02:00
dr. M.S. (Matthijs) Berends 4816419f0c AI improvements for microorganisms 2018-09-09 12:11:44 +02:00
dr. M.S. (Matthijs) Berends 936198372e translate CoNS 2018-09-08 16:24:12 +02:00
dr. M.S. (Matthijs) Berends 26f5be0033 support for portuguese, language determination based on system 2018-09-08 16:06:47 +02:00