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7a3139f7cc
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(v1.6.0.9000) custom EUCAST rules
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2021-04-07 08:37:42 +02:00 |
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551f99dc8f
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v1.6.0
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2021-03-15 07:23:21 +01:00 |
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4e0a9533ad
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(v1.5.0.9041) SNOMED update
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2021-03-11 21:42:30 +01:00 |
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8d6ceb6a15
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(v1.5.0.9040) removal of isolate_identifier
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2021-03-08 09:44:17 +01:00 |
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a7c9b4c295
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(v1.5.0.9039) handle first isolates for missing antibiograms
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2021-03-08 02:38:32 +01:00 |
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450bbe5fb7
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(v1.5.0.9034) unit test fix
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2021-03-07 21:16:45 +01:00 |
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1bbf409fe5
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(v1.5.0.9033) as.rsi fix
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2021-03-07 16:15:43 +01:00 |
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850c123de7
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(v1.5.0.9032) All group generics for MICs
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2021-03-07 13:52:39 +01:00 |
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91dd755cac
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(v1.5.0.9031) math processing of MICs
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2021-03-05 15:36:39 +01:00 |
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0d29bde693
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(v1.5.0.9030) as.ab() speed improvement
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2021-03-05 10:32:09 +01:00 |
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0e0e3c4ffa
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(v1.5.0.9029) added missing families and orders
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2021-03-05 01:31:46 +01:00 |
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ddf88345f1
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(v1.5.0.9028) Updated taxonomy until March 2021
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2021-03-04 23:28:32 +01:00 |
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41f94cde97
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(v1.5.0.9027) website update
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2021-02-26 12:11:29 +01:00 |
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1737d56ae4
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(v1.5.0.9026) vignette update, support for GISA
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2021-02-25 12:31:12 +01:00 |
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a673407904
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(v1.5.0.9025) big plot and ggplot generics update
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2021-02-25 10:33:08 +01:00 |
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31ceba5441
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(v1.5.0.9024) more speed improvements
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2021-02-22 20:21:33 +01:00 |
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0fdabff1ba
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(v1.5.0.9023) mo properties speed improvement
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2021-02-21 23:19:40 +01:00 |
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062c49fca1
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(v1.5.0.9022) mo properties speed improvement
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2021-02-21 22:56:35 +01:00 |
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5ef8cb41a7
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(v1.5.0.9021) improve speed of %like%
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2021-02-21 20:15:09 +01:00 |
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daa12ced2c
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(v1.5.0.9020) translation fix
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2021-02-18 23:23:14 +01:00 |
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601ea7377c
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(v1.5.0.9019) use functions without loading AMR pkg
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2021-02-17 10:58:13 +01:00 |
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2dd0656355
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(v1.5.0.9018) fix unit tests
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2021-02-09 12:28:15 +01:00 |
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cb404492b2
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(v1.5.0.9017) unit testing
|
2021-02-08 21:09:36 +01:00 |
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4a84894f79
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(v1.5.0.9016) only_rsi_columns update, documentation
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2021-02-08 14:18:42 +01:00 |
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8fda473e49
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(v1.5.0.9015) unit test fix, grouped first isolates
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2021-02-04 16:48:16 +01:00 |
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2eca8c3f01
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(v1.5.0.9014) only_rsi_columns, is.rsi.eligible improvement
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2021-02-02 23:57:35 +01:00 |
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20d638c193
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(v1.5.0.9013) updated tibble printing colours
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2021-01-28 16:09:30 +01:00 |
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331c1f6508
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(v1.5.0.9012) ampc_cephalosporin_resistance for I
|
2021-01-25 21:58:00 +01:00 |
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24eb4453db
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(v1.5.0.9011) small dosage update
|
2021-01-24 23:27:11 +01:00 |
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286eaa9699
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(v1.5.0.9010) MDRO vignette update, get_episode for < day
|
2021-01-24 14:48:56 +01:00 |
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1a88caa119
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(v1.5.0.9009) unit test fixes
|
2021-01-22 10:55:07 +01:00 |
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1ba44776a1
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(v1.5.0.9008) Internal data sets to pkg, speed for auto col determination
|
2021-01-22 10:20:41 +01:00 |
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27f084d819
|
(v1.5.0.9007) updated unit tests
|
2021-01-18 18:45:43 +01:00 |
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4eab095306
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(v1.5.0.9006) major documentation update
|
2021-01-18 16:57:56 +01:00 |
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e95218c0d1
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(v1.5.0.9005) custom MDRO guideline
|
2021-01-17 10:35:21 +01:00 |
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e699de955c
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(v1.5.0.9004) custom MDRO guideline
|
2021-01-17 00:26:48 +01:00 |
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7ebc534ccd
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(v1.5.0.9003) verbose output of mdro()
|
2021-01-15 22:44:52 +01:00 |
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6745f3fb17
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(v1.5.0.9002) doc update
|
2021-01-14 15:51:41 +01:00 |
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bc00470dca
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(v1.5.0.9001) more informative argument errors
|
2021-01-14 14:41:44 +01:00 |
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d014955ce0
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(v.1.5.0.9000) implementation of EUCAST rules v11 (2021)
|
2021-01-12 22:08:04 +01:00 |
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3b84b8be75
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v1.5.0
|
2021-01-06 11:16:17 +01:00 |
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1563dcd1aa
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(v1.4.0.9062) unit test fix
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2021-01-04 14:46:17 +01:00 |
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a7ea4c9d2f
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(v1.4.0.9061) ab class selector fix
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2021-01-04 14:16:09 +01:00 |
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8d117820b8
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(v1.4.0.9060) ab class selector fix
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2021-01-04 13:39:06 +01:00 |
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c9de74c81a
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(v1.4.0.9059) ab class selector fix
|
2021-01-04 12:29:25 +01:00 |
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82cfa24ea4
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(v1.4.0.9058) GH actions update
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2021-01-04 11:27:37 +01:00 |
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daac96fefe
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(v1.4.0.9057) GH actions update
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2021-01-04 09:49:42 +01:00 |
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63a4dda467
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(v1.4.0.9056) subsetting ab class selectors for base R
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2021-01-03 23:40:05 +01:00 |
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ecac443f86
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(v1.4.0.9055) more unit tests
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2020-12-31 13:44:58 +01:00 |
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10dec96058
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(v1.4.0.9054) unit test update
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2020-12-29 22:06:01 +01:00 |
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d3f007bf65
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(v1.4.0.9053) unit test old R versions
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2020-12-29 21:23:01 +01:00 |
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526f8afb08
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(v1.4.0.9052) replaced all sapply's with type-safe vapply's
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2020-12-28 22:24:33 +01:00 |
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ccf13dd6c0
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(v1.4.0.9051) ab class
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2020-12-27 23:19:41 +01:00 |
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afc325c314
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(v1.4.0.9050) ab selectors base R
|
2020-12-27 20:32:40 +01:00 |
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175e33abba
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(v1.4.0.9049) unit tests
|
2020-12-27 15:07:01 +01:00 |
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ed198916bf
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(v1.4.0.9048) AmpC de-repressed cephalo-resistant mutants
|
2020-12-27 14:23:11 +01:00 |
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8b52f9b1be
|
(v1.4.0.9047) unit tests
|
2020-12-27 00:30:28 +01:00 |
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acbd0cf7ca
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(v1.4.0.9046) get_episode
|
2020-12-27 00:07:00 +01:00 |
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291f802be3
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(v1.4.0.9045) unit tests
|
2020-12-25 00:06:11 +01:00 |
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df37584189
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(v1.4.0.9044) mo tibble printing, mo_shortname() fix
|
2020-12-24 23:29:10 +01:00 |
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128ebcfd62
|
(v1.4.0.9043) documentation update
|
2020-12-22 00:51:17 +01:00 |
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ee70883246
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(v1.4.0.9042) auto dark theme website
|
2020-12-21 22:46:29 +01:00 |
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81af41da3a
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(v1.4.0.9041) updates based on review
|
2020-12-17 16:22:25 +01:00 |
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1faa816090
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(v1.4.0.9040) LA-MRSA / CA-MRSA
|
2020-12-16 16:18:53 +01:00 |
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203bc20eb0
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(v1.4.0.9039) more unit tests
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2020-12-13 20:44:32 +01:00 |
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ac22b8d5c1
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(v1.4.0.9038) docu update
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2020-12-13 13:44:04 +01:00 |
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c8bcecf232
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(v1.4.0.9037) random_* functions
|
2020-12-12 23:17:29 +01:00 |
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2edd3339db
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(v1.4.0.9036) more unit tests
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2020-12-11 12:17:23 +01:00 |
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23ddc6004b
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(v1.4.0.9035) eucast_rules fix
|
2020-12-11 09:05:03 +01:00 |
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c9fc7e8a45
|
(v1.4.0.9034) MIC printing update
|
2020-12-09 09:40:50 +01:00 |
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2145f1d1ba
|
(v1.4.0.9033) documentation update
|
2020-12-08 12:37:25 +01:00 |
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1bdb136b3a
|
(v1.4.0.9032) auto-data guessing for functions
|
2020-12-07 16:06:42 +01:00 |
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fdf29e6c5b
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(v1.4.0.9031) as.ab() fix
|
2020-12-03 22:30:14 +01:00 |
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e03b3c96d3
|
(v1.4.0.9030) as.mo() fix for known lab codes
|
2020-12-03 16:59:04 +01:00 |
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4c114ff4b4
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(v1.4.0.9029) grey background for backticks, like readr pkg
|
2020-12-01 16:59:57 +01:00 |
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0e1fdb7dd7
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(v1.4.0.9027) docu update
|
2020-11-25 20:26:02 +01:00 |
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7b42b15c90
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(v1.4.0.9026) docu update
|
2020-11-24 11:47:54 +01:00 |
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b045b571a6
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(v1.4.0.9025) is_new_episode()
|
2020-11-23 21:50:27 +01:00 |
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363218da7e
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(v1.4.0.9024) is_new_episode()
|
2020-11-17 16:57:41 +01:00 |
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0800d33228
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(v1.4.0.9023) unit tests
|
2020-11-17 11:53:56 +01:00 |
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93428415d0
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(v1.4.0.9022) small bugfix
|
2020-11-16 20:02:20 +01:00 |
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deefce9520
|
(v1.4.0.9021) more robust class setting
|
2020-11-16 16:57:55 +01:00 |
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05fb213a7c
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(v1.4.0.9020) mo_is_intrinsic_resistant
|
2020-11-16 11:03:24 +01:00 |
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9666b78ea7
|
(v1.4.0.9019) documentation update
|
2020-11-12 11:07:23 +01:00 |
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f2edac3b67
|
(v1.4.0.9018) reference_data in as.rsi()
|
2020-11-11 18:54:03 +01:00 |
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01d9522434
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(v1.4.0.9017) stringsAsFactors definitions
|
2020-11-11 16:49:27 +01:00 |
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68ac39aa7f
|
(v1.4.0.9016) as.rsi() older R versions
|
2020-11-10 19:59:14 +01:00 |
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15c732703d
|
(v1.4.0.9015) bugfix
|
2020-11-10 16:35:56 +01:00 |
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dd5a0319ef
|
(v1.4.0.9014) bugfix
|
2020-11-09 15:18:36 +01:00 |
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d3b1d33210
|
(v1.4.0.9013) is_gram_negative/positive update
|
2020-11-09 13:07:02 +01:00 |
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423879c034
|
(v1.4.0.9012) reference_df fix
|
2020-11-05 01:11:49 +01:00 |
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5a607abb36
|
(v1.4.0.9011) message formatting
|
2020-10-27 15:56:51 +01:00 |
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3d096d96c2
|
(v1.4.0.9009) bugfix for older R version
|
2020-10-26 15:53:31 +01:00 |
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760d69a3e0
|
(v1.4.0.9008) like variations
|
2020-10-26 12:23:03 +01:00 |
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f720c9ba0b
|
(v1.4.0.9007) bugfix
|
2020-10-21 15:28:48 +02:00 |
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8f868388ce
|
(v1.4.0.9006) bugfix
|
2020-10-21 14:40:00 +02:00 |
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9109b9dd62
|
(v1.4.0.9005) bugfix
|
2020-10-21 13:07:23 +02:00 |
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ade9f8bafd
|
(v1.4.0.9004) bugfix
|
2020-10-21 11:50:43 +02:00 |
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2ef7dfc8a3
|
(v1.4.0.9003) CoNS update
|
2020-10-20 21:00:57 +02:00 |
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ddae8085e1
|
(v1.4.0.9002) bugfix
|
2020-10-19 20:44:45 +02:00 |
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4e9ccb4435
|
(v1.4.0.9001) is_gram_positive(), is_gram_negative(), parameter hardening
|
2020-10-19 17:09:19 +02:00 |
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833a1be36d
|
(v1.4.0.9000) more extensive unit tests
|
2020-10-15 09:46:41 +02:00 |
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28e77680c5
|
(v1.4.0) matching score update
|
2020-10-08 11:16:03 +02:00 |
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c04dc852cf
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(v1.3.0.9039) lifecycle updates, added excess kurtosis
|
2020-10-04 21:02:16 +02:00 |
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baf510183c
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(v1.3.0.9038) prefinal 1.4.0
|
2020-10-04 19:26:43 +02:00 |
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3136bc54aa
|
(v1.3.0.9037) pre-release
|
2020-09-30 10:54:23 +02:00 |
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ac1c78c793
|
(v1.3.0.9036) documentation fix
|
2020-09-30 10:24:53 +02:00 |
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4e0374af29
|
(v1.3.0.9035) mdro() for EUCAST 3.2, examples cleanup
|
2020-09-29 23:35:46 +02:00 |
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68e6e1e329
|
(v1.3.0.9034) eucast_rules summary fix
|
2020-09-29 10:40:25 +02:00 |
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36ec8b0d81
|
(v1.3.0.9033) skimr fix
|
2020-09-28 11:00:59 +02:00 |
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519aada54f
|
(v1.3.0.9032) support skimr
|
2020-09-28 01:08:55 +02:00 |
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22f6ceb3e4
|
(v1.3.0.9031) matching score update
|
2020-09-26 16:51:17 +02:00 |
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050a9a04fb
|
(v1.3.0.9030) matching score update
|
2020-09-26 16:26:01 +02:00 |
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9667c2994f
|
(v1.3.0.9029) eucast rules fix, unique()
|
2020-09-25 14:44:50 +02:00 |
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1d982a82b4
|
(v1.3.0.9028) eucast fix
|
2020-09-24 12:38:13 +02:00 |
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027215ed94
|
(v1.3.0.9027) unit tests
|
2020-09-24 00:50:23 +02:00 |
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c19095a3d5
|
(v1.3.0.9026) eucast expert rules 3.2
|
2020-09-24 00:30:11 +02:00 |
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a1411ddafc
|
(v1.3.0.9025) optimalisation
|
2020-09-19 15:15:57 +02:00 |
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2f0186ace2
|
(v1.3.0.9024) optimalisation
|
2020-09-19 12:57:51 +02:00 |
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d049cce69b
|
(v1.3.0.9023) optimalisation
|
2020-09-19 11:54:01 +02:00 |
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4e40e42011
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(v1.3.0.9022) mo_matching_score(), poorman update, as.rsi() fix
|
2020-09-18 16:05:53 +02:00 |
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89401ede9f
|
(v1.3.0.9021) typo
|
2020-09-14 20:41:19 +02:00 |
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ab60f613aa
|
(v1.3.0.9020) fix for uncertainty in as.mo()
|
2020-09-14 19:41:48 +02:00 |
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354c606d6a
|
(v1.3.0.9019) small fix
|
2020-09-14 14:08:07 +02:00 |
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7b6dd676f7
|
(v1.3.0.9018) language corrections
|
2020-09-14 12:21:23 +02:00 |
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0f6760d427
|
(v1.3.0.9017) small fix
|
2020-09-12 13:54:21 +02:00 |
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3ff871afeb
|
(v1.3.0.9016) mo_uncertainties() overhaul
|
2020-09-12 08:49:01 +02:00 |
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68e9cb78e9
|
(v1.3.0.9015) as.mo() speedup for valid taxonomic names
|
2020-09-03 20:59:21 +02:00 |
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c4b87fe241
|
(v1.3.0.9014) as.mo() speed improvement
|
2020-09-03 12:31:48 +02:00 |
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18e52f2725
|
(v1.3.0.9013) data sets vignette update
|
2020-08-29 21:52:51 +02:00 |
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4f72b3bfc4
|
(v1.3.0.9012) data sets vignette update
|
2020-08-29 21:41:46 +02:00 |
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50b953b141
|
(v1.3.0.9011) suggests pkg update
|
2020-08-29 12:04:23 +02:00 |
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74a172ef55
|
(v1.3.0.9010) S3 extensions without dependencies
|
2020-08-28 21:55:47 +02:00 |
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81af0b001c
|
(v1.3.0.9009) documentation update
|
2020-08-26 16:13:40 +02:00 |
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9b8db57c65
|
(v1.3.0.9008) also tibble printing for ab
|
2020-08-26 15:34:12 +02:00 |
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5e45fdcf2a
|
(v1.3.0.9007) tibble printing
|
2020-08-26 11:33:54 +02:00 |
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c8c8bb4e3a
|
(v1.3.0.9006) website update
|
2020-08-21 11:40:13 +02:00 |
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818d0441e0
|
(v1.3.0.9005) website update
|
2020-08-17 21:49:58 +02:00 |
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dab017a50f
|
(v1.3.0.9004) data sets, as.disk() improvement
|
2020-08-16 21:38:42 +02:00 |
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e73f0e211c
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(v1.3.0.9003) as.rsi() speed improvement
|
2020-08-15 12:54:47 +02:00 |
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08d62bb5d5
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(v1.3.0.9002) intrinsic_resistant data set
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2020-08-14 13:36:10 +02:00 |
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7d16bec21f
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(v1.3.0.9001) website update
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2020-08-10 12:46:03 +02:00 |
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0d9602a6a9
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(v1.3.0.9000) support across() in as.rsi()
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2020-08-10 11:44:58 +02:00 |
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791bb6d33f
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(v1.3.0) remove vignettes from CRAN
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2020-07-31 11:39:56 +02:00 |
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c5f7294381
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(v1.3.0) skip more CRAN tests
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2020-07-31 10:50:08 +02:00 |
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c8edcb7439
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(v1.3.0) small fixes
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2020-07-30 15:15:52 +02:00 |
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8ff46eefe9
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(v1.3.0) small MIC fix
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2020-07-30 12:37:01 +02:00 |
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ea4e5e5b81
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(v1.3.0) v1.3.0
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2020-07-29 13:48:50 +02:00 |
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de0f7b8950
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(v1.2.0.9040) conserve_capped_values for as.rsi()
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2020-07-29 12:47:58 +02:00 |
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e7def0aa4c
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(v1.2.0.9039) conserve_capped_values for as.rsi()
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2020-07-29 11:46:59 +02:00 |
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453f7f210b
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(v1.2.0.9038) CLSI 2019 fix
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2020-07-29 10:33:47 +02:00 |
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1b65d76cfb
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(v1.2.0.9037) survey on website
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2020-07-28 18:39:57 +02:00 |
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ab2b359e6b
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(v1.2.0.9036) unit test fix
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2020-07-22 12:29:51 +02:00 |
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09fba38ea6
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(v1.2.0.9035) as.mo() speed improvement
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2020-07-22 10:24:23 +02:00 |
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6ab468362d
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(v1.2.0.9034) code cleaning
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2020-07-13 09:17:24 +02:00 |
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c0cf7ab02b
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(v1.2.0.9033) speed improvement mdro(), filter_ab_class()
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2020-07-12 11:43:31 +02:00 |
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1d66b5c43c
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(v1.2.0.9032) Permanently move to GitHub
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2020-07-09 20:07:39 +02:00 |
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a438dcc884
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(v1.2.0.9031) GitHub Actions
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2020-07-09 16:11:56 +02:00 |
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7baa9d3658
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(v1.2.0.9030) GitHub Actions
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2020-07-09 14:12:11 +02:00 |
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cf3c3ee8f7
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(v1.2.0.9029) GitHub actions
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2020-07-08 22:55:17 +02:00 |
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d39d32448b
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(v1.2.0.9028) GitHub actions
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2020-07-08 20:43:25 +02:00 |
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5195e0b9da
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(v1.2.0.9027) move to github
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2020-07-08 17:48:57 +02:00 |
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76fc8e1b14
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(v1.2.0.9026) move to github
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2020-07-08 14:48:06 +02:00 |
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2134fc76e2
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(v1.2.0.9025) AMR calculation speed improvement
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2020-07-03 12:14:41 +02:00 |
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46cf423eab
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(v1.2.0.9024) AMR calculation speed improvement
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2020-07-03 10:51:55 +02:00 |
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152ac5bcad
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(v1.2.0.9023) ab_from_text() improvement
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2020-07-02 21:12:52 +02:00 |
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298e67a45b
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(v1.2.0.9022) as.ab() improvement
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2020-07-01 16:21:36 +02:00 |
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afc660dc33
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(v1.2.0.9021) only progressbar in interactive sessions
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2020-07-01 11:51:26 +02:00 |
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cc6ce0a938
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(v1.2.0.9020) ab_from_text() improvement
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2020-07-01 11:23:05 +02:00 |
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329a0eb0b6
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(v1.2.0.9019) ab_from_text() dose and administration
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2020-07-01 11:07:01 +02:00 |
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240d817b4e
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(v1.2.0.9018) ab_from_text() improvement
|
2020-06-26 13:15:46 +02:00 |
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4f6f056077
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(v1.2.0.9017) ab_from_text() improvement
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2020-06-26 12:31:27 +02:00 |
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b31003c0b6
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(v1.2.0.9016) fix in rsi_calc()
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2020-06-26 10:21:22 +02:00 |
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033ca49817
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(v1.2.0.9015) ab_from_text()
|
2020-06-25 19:20:50 +02:00 |
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344bbd57f4
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(v1.2.0.9014) ab_from_text()
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2020-06-25 17:34:50 +02:00 |
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8a66e475d7
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(v1.2.0.9013) unit test fix
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2020-06-22 13:18:40 +02:00 |
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779a4e8348
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(v1.2.0.9012) mo_domain(), improved error handling
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2020-06-22 12:18:53 +02:00 |
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93a158aebd
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(v1.2.0.9011) mo_domain(), improved error handling
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2020-06-22 11:18:40 +02:00 |
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e88d7853f5
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(v1.2.0.9010) documentation fix
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2020-06-17 21:35:10 +02:00 |
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f18389d5d6
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(v1.2.0.9009) pkg dependency fix
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2020-06-17 16:29:10 +02:00 |
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ac12392da3
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(v1.2.0.9008) ab_class improvement
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2020-06-17 15:14:37 +02:00 |
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c4d7412f36
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(v1.2.0.9007) Tidyverse selections
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2020-06-17 01:39:30 +02:00 |
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4f94e1312f
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(v1.2.0.9006) improve auto col-determination
|
2020-06-11 20:03:13 +02:00 |
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352508889c
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(v1.2.0.9005) data set fix
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2020-06-09 16:31:44 +02:00 |
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8b692ecfcf
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(v1.2.0.9004) rsi_df() fix for groups
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2020-06-09 16:18:03 +02:00 |
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40221e5244
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(v1.2.0.9003) better terminal colour support
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2020-06-05 13:56:05 +02:00 |
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2c8d600914
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(v1.2.0.9002) fix for joins
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2020-06-03 14:33:55 +02:00 |
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5dc4c96b7d
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(v1.2.0.9001) filter_ab_class() update
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2020-06-03 11:48:00 +02:00 |
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02d07b9fb3
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(v1.2.0.9000) eucast_rules() fix for tibbles
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2020-06-02 16:05:56 +02:00 |
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b44e2c9202
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v1.2.0
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2020-05-28 16:48:55 +02:00 |
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d9a4b0bcaf
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(v1.1.0.9021) 1st isolates update
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2020-05-28 10:51:56 +02:00 |
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86d44054f0
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(v1.1.0.9020) updated taxonomy
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2020-05-27 16:37:49 +02:00 |
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ae1969b941
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(v1.1.0.9019) mo_source fix
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2020-05-25 01:01:14 +02:00 |
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f5ff2e6634
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(v1.1.0.9018) as.ab() update, added ab_url()
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2020-05-22 20:29:55 +02:00 |
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e467cc103e
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(v1.1.0.9017) as.ab() update, added ab_url()
|
2020-05-22 20:15:19 +02:00 |
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1b1e243d14
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(v1.1.0.9016) small fix
|
2020-05-21 12:28:57 +02:00 |
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743f9a5364
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(v1.1.0.9015) new default eucast_rules
|
2020-05-20 12:00:17 +02:00 |
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5216d2b520
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(v1.1.0.9014) lose dependencies
|
2020-05-19 14:16:45 +02:00 |
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cb1814f5ff
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(v1.1.0.9013) lose dependencies
|
2020-05-19 13:18:01 +02:00 |
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19703eb5d3
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(v1.1.0.9012) lose dependencies
|
2020-05-19 12:08:49 +02:00 |
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