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Commit Graph

137 Commits

Author SHA1 Message Date
23ddc6004b (v1.4.0.9035) eucast_rules fix 2020-12-11 09:05:03 +01:00
1bdb136b3a (v1.4.0.9032) auto-data guessing for functions 2020-12-07 16:06:42 +01:00
fdf29e6c5b (v1.4.0.9031) as.ab() fix 2020-12-03 22:30:14 +01:00
e03b3c96d3 (v1.4.0.9030) as.mo() fix for known lab codes 2020-12-03 16:59:04 +01:00
9666b78ea7 (v1.4.0.9019) documentation update 2020-11-12 11:07:23 +01:00
01d9522434 (v1.4.0.9017) stringsAsFactors definitions 2020-11-11 16:49:27 +01:00
15c732703d (v1.4.0.9015) bugfix 2020-11-10 16:35:56 +01:00
d3b1d33210 (v1.4.0.9013) is_gram_negative/positive update 2020-11-09 13:07:02 +01:00
5a607abb36 (v1.4.0.9011) message formatting 2020-10-27 15:56:51 +01:00
4e9ccb4435 (v1.4.0.9001) is_gram_positive(), is_gram_negative(), parameter hardening 2020-10-19 17:09:19 +02:00
28e77680c5 (v1.4.0) matching score update 2020-10-08 11:16:03 +02:00
baf510183c (v1.3.0.9038) prefinal 1.4.0 2020-10-04 19:26:43 +02:00
4e0374af29 (v1.3.0.9035) mdro() for EUCAST 3.2, examples cleanup 2020-09-29 23:35:46 +02:00
68e6e1e329 (v1.3.0.9034) eucast_rules summary fix 2020-09-29 10:40:25 +02:00
36ec8b0d81 (v1.3.0.9033) skimr fix 2020-09-28 11:00:59 +02:00
9667c2994f (v1.3.0.9029) eucast rules fix, unique() 2020-09-25 14:44:50 +02:00
1d982a82b4 (v1.3.0.9028) eucast fix 2020-09-24 12:38:13 +02:00
027215ed94 (v1.3.0.9027) unit tests 2020-09-24 00:50:23 +02:00
c19095a3d5 (v1.3.0.9026) eucast expert rules 3.2 2020-09-24 00:30:11 +02:00
4e40e42011 (v1.3.0.9022) mo_matching_score(), poorman update, as.rsi() fix 2020-09-18 16:05:53 +02:00
ab60f613aa (v1.3.0.9020) fix for uncertainty in as.mo() 2020-09-14 19:41:48 +02:00
9b8db57c65 (v1.3.0.9008) also tibble printing for ab 2020-08-26 15:34:12 +02:00
5e45fdcf2a (v1.3.0.9007) tibble printing 2020-08-26 11:33:54 +02:00
c8c8bb4e3a (v1.3.0.9006) website update 2020-08-21 11:40:13 +02:00
08d62bb5d5 (v1.3.0.9002) intrinsic_resistant data set 2020-08-14 13:36:10 +02:00
6ab468362d (v1.2.0.9034) code cleaning 2020-07-13 09:17:24 +02:00
76fc8e1b14 (v1.2.0.9026) move to github 2020-07-08 14:48:06 +02:00
93a158aebd (v1.2.0.9011) mo_domain(), improved error handling 2020-06-22 11:18:40 +02:00
ac12392da3 (v1.2.0.9008) ab_class improvement 2020-06-17 15:14:37 +02:00
40221e5244 (v1.2.0.9003) better terminal colour support 2020-06-05 13:56:05 +02:00
02d07b9fb3 (v1.2.0.9000) eucast_rules() fix for tibbles 2020-06-02 16:05:56 +02:00
86d44054f0 (v1.1.0.9020) updated taxonomy 2020-05-27 16:37:49 +02:00
1b1e243d14 (v1.1.0.9016) small fix 2020-05-21 12:28:57 +02:00
743f9a5364 (v1.1.0.9015) new default eucast_rules 2020-05-20 12:00:17 +02:00
d659c9baef (v1.1.0.9010) lose dependencies 2020-05-18 11:09:02 +02:00
f68d71a5e0 (v1.1.0.9007) lose dependencies 2020-05-16 21:40:50 +02:00
7f3da74b17 (v1.1.0.9004) lose dependencies 2020-05-16 13:05:47 +02:00
ea32e9916a (v1.0.0.9005) info printing only in interactive mode 2020-02-21 21:13:38 +01:00
5e2b294351 (v0.9.0.9026) update documentation 2020-02-17 14:38:01 +01:00
9b8b02960e (v0.9.0.9023) EUCAST 2020 guidelines 2020-02-14 19:54:13 +01:00
449d9bde35 (v0.9.0.9012) Support for LOINC codes 2020-01-26 20:20:00 +01:00
ced1a7b7fa (v0.9.0.9008) Happy new year! Add lifecycles 2020-01-05 17:22:09 +01:00
c5f00f4a9f (v0.8.0.9036) complete documentation rewrite 2019-11-28 22:32:17 +01:00
267320f15f (v0.8.0.9033) antivirals data set, cleanup 2019-11-18 12:10:47 +01:00
09e2730b53 (v0.8.0.9031) as.mo() improvements 2019-11-15 15:25:03 +01:00
ef640add2d (v0.8.0.9021) update vignettes 2019-11-09 11:33:22 +01:00
e2d05cb1b0 (v0.8.0.9017) keywords update 2019-11-06 14:43:23 +01:00
7ff2ad8188 (v0.8.0.9006) small typos 2019-10-27 00:31:59 +02:00
d2e8249edd (v0.8.0.9004) added MDR guideline by Magiorakos et al. 2019-10-26 21:56:41 +02:00
00cdb498a0 (v0.7.1.9102) lintr 2019-10-11 17:21:02 +02:00
c8f6b97847 (v0.7.1.9100) bug_drug speed, MIC levels 2019-10-08 22:21:33 +02:00
4e9c4c1b4e (v0.7.1.9096) German guideline for mdro() 2019-10-07 14:32:06 +02:00
3d5692219e (v0.7.1.9094) get_column_abx() improvement 2019-10-06 21:44:08 +02:00
7c069145ac (v0.7.1.9058) as.mo() improvement 2019-08-20 11:40:54 +02:00
1d423cca89 (v0.7.1.9035) cephalosporins and unit tests 2019-08-11 19:07:26 +02:00
6a349bf757 (v0.7.1.9032) eucast_rules() improvements 2019-08-09 14:28:46 +02:00
22a206ffd8 (v0.7.1.9030) eucast_rules() fix 2019-08-08 15:52:07 +02:00
90c874025a (v0.7.1.9027) tibble printing 2019-08-07 15:37:39 +02:00
96b334d7cc website update 2019-08-06 14:46:30 +02:00
3a1f960f89 (v0.7.1.9024) eucast_rules() fix, new MOs 2019-08-06 14:39:22 +02:00
2a62c3d62a (v0.7.1.9018) deps 2019-07-30 13:12:40 +02:00
b452de2fe4 (v0.7.1.9010) eucast informative text in verbose mode 2019-07-09 13:36:03 +02:00
65c6702b21 (v0.7.1.9004) atc class removal 2019-06-27 11:57:45 +02:00
f02679fb63 (v0.7.0.9001) new pathovars, small fixes 2019-06-07 22:47:37 +02:00
2667fff8a7 (v0.6.1.9050) support staged install 2019-06-01 20:40:49 +02:00
8b5e2b030b added boxplot for (grouped) freq() 2019-05-29 19:56:17 +02:00
60983a1640 added mdr_tb() 2019-05-23 16:58:59 +02:00
07d26cd485 faster determination of abx 2019-05-20 19:12:41 +02:00
4ca00e1868 speed improvement eucast_rules(), support more old MO codes 2019-05-20 12:00:18 +02:00
68cc7ef0d0 new antibiotics 2019-05-10 16:44:59 +02:00
461eec9bac cfta streptococci, codecov.yml 2019-04-09 14:59:17 +02:00
51fdc5d6cc self-learning off 2019-04-06 09:38:23 +02:00
fbc9191b13 new EUCAST rules algorithm 2019-04-05 18:47:39 +02:00
b25f2d6213 v0.6.1 2019-03-28 21:33:28 +01:00
54f8258f8c Catalogue of Life, replaces ITIS 2019-02-18 02:33:37 +01:00
ed30312048 mo codes for WHONET 2019-02-08 16:06:54 +01:00
f4ff98b470 WHO update, antibiotics update 2019-01-25 13:18:41 +01:00
046d195064 resistance predict 2019-01-15 12:45:24 +01:00
641d866db2 guess_ab_col, benchmarks 2019-01-11 20:37:23 +01:00
193a2d2863 EUCAST update, as.mo bugfix for empty vlaues 2019-01-08 16:23:45 +01:00
80ea555663 guess_ab 2019-01-03 23:56:19 +01:00
6b2d464f8c big website update, licence txt update 2019-01-02 23:24:07 +01:00
2e4d703338 eucast rules fix, 1st isolate fix, website update 2018-12-31 01:48:53 +01:00
0b8084871d dplyr 0.8.0 support, fixes #7 2018-12-22 22:39:34 +01:00
b937662a97 limits for scale_y_percent - Licence update 2018-12-16 22:45:12 +01:00
8e8a9cd190 AI improvements 2018-12-07 12:04:55 +01:00
4fcc2b409a MDRO update 2018-11-16 20:50:50 +01:00