 dr. M.S. (Matthijs) Berends
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03294c7901
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fix for Salmonella group A, unit tests
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2023-02-10 16:47:25 +01:00 |
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dr. M.S. (Matthijs) Berends
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bc434db835
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bring back `antibiogram()`, without deps
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2023-02-10 16:18:00 +01:00 |
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dr. M.S. (Matthijs) Berends
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70a7ba0206
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fix first isolate
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2023-02-10 13:13:17 +01:00 |
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dr. M.S. (Matthijs) Berends
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1a0dc4bf46
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revert back to pre-antibiogram
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2023-02-09 13:07:39 +01:00 |
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dr. M.S. (Matthijs) Berends
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822e9de82c
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pm update, unit test fix?
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2023-02-08 13:48:06 +01:00 |
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dr. M.S. (Matthijs) Berends
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75a4c1ef3e
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fixes2
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2023-02-06 14:34:38 +01:00 |
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dr. M.S. (Matthijs) Berends
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9e99e66f01
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use dplyr where available, new `antibiogram()` for WISCA, fixed Salmonella Typhi/Paratyphi
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2023-02-06 11:57:22 +01:00 |
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dr. M.S. (Matthijs) Berends
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4b133d4c96
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unit tests
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2023-01-30 17:24:03 +01:00 |
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dr. M.S. (Matthijs) Berends
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126afb01a4
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unit tests 2
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2023-01-24 16:31:00 +01:00 |
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dr. M.S. (Matthijs) Berends
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c0d8888ab7
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unit tests
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2023-01-24 16:09:48 +01:00 |
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dr. M.S. (Matthijs) Berends
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7b00b4f34a
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unit tests
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2023-01-24 14:52:15 +01:00 |
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dr. M.S. (Matthijs) Berends
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830c67f1bf
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documentation, unit tests
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2023-01-24 10:20:27 +01:00 |
Dr. Matthijs Berends
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98e62c9af2
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Replace RSI with SIR
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2023-01-21 23:47:20 +01:00 |
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dr. M.S. (Matthijs) Berends
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24b12024ce
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unit test fix
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2023-01-20 09:45:03 +01:00 |
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dr. M.S. (Matthijs) Berends
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b94bc6c67b
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adding mo fixes
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2023-01-14 19:50:25 +01:00 |
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dr. M.S. (Matthijs) Berends
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cf16bc7de1
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unit tests
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2023-01-06 13:45:20 +01:00 |
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dr. M.S. (Matthijs) Berends
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86e28bafce
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add mo_pathogenicity
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2023-01-06 13:35:37 +01:00 |
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dr. M.S. (Matthijs) Berends
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51c0f0814e
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new setup unit tests
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2023-01-05 15:03:18 +01:00 |
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dr. M.S. (Matthijs) Berends
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f619fb683b
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support new mo codes
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2022-12-27 15:16:15 +01:00 |
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dr. M.S. (Matthijs) Berends
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e493248ea5
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unit test and news file
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2022-12-21 09:12:53 +01:00 |
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dr. M.S. (Matthijs) Berends
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4c42a43f7d
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fixes
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2022-12-20 22:41:39 +01:00 |
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dr. M.S. (Matthijs) Berends
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6f4bb603ec
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unit tests
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2022-12-20 22:18:50 +01:00 |
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dr. M.S. (Matthijs) Berends
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23fe427cbc
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Fixes for Salmonella
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2022-12-17 14:31:33 +01:00 |
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dr. M.S. (Matthijs) Berends
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e7d7b94b3e
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no obligatory note on startup
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2022-12-09 15:10:49 +01:00 |
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dr. M.S. (Matthijs) Berends
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510140fc55
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Updated `mo_gramstain()` to reflect current taxonomy, fixes #83
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2022-12-09 10:30:25 +01:00 |
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dr. M.S. (Matthijs) Berends
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31fb81c382
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revised `as.rsi()`, fix for `mdro()`
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2022-11-24 20:29:00 +01:00 |
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dr. M.S. (Matthijs) Berends
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05d536ebb7
|
complexes
|
2022-11-17 15:23:29 +01:00 |
|
Dr. Matthijs Berends
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496c08d851
|
Implement extensive support for antiviral agents support (#77)
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2022-11-13 08:46:10 +01:00 |
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dr. M.S. (Matthijs) Berends
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d20caae54b
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cleanup
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2022-10-31 13:25:41 +01:00 |
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dr. M.S. (Matthijs) Berends
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796b972f8a
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extend vctrs support
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2022-10-31 11:19:06 +01:00 |
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dr. M.S. (Matthijs) Berends
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9444ed6d1d
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fix antibiotics error
|
2022-10-30 21:05:46 +01:00 |
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dr. M.S. (Matthijs) Berends
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3d9faf89cf
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ATC and DDD update
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2022-10-29 19:01:23 +02:00 |
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dr. M.S. (Matthijs) Berends
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6ad7857d39
|
fix missing R breakpoints
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2022-10-29 14:15:23 +02:00 |
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dr. M.S. (Matthijs) Berends
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d10651eb26
|
cleanup
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2022-10-22 10:20:09 +02:00 |
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dr. M.S. (Matthijs) Berends
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aa2c0639d0
|
add confidence intervals (fixed #70), remove `combine_IR`
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2022-10-20 16:08:01 +02:00 |
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dr. M.S. (Matthijs) Berends
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85e2fbe4a3
|
remove warnings from unit tests
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2022-10-19 11:47:57 +02:00 |
|
Dr. Matthijs Berends
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fed3b6440f
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Unit test fix
|
2022-10-19 08:14:38 +02:00 |
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dr. M.S. (Matthijs) Berends
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f203928f7e
|
coercion fixes
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2022-10-19 06:59:36 +02:00 |
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dr. M.S. (Matthijs) Berends
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e5e6d2200d
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fix add manual ab
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2022-10-18 22:53:38 +02:00 |
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dr. M.S. (Matthijs) Berends
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76bcd3528c
|
move object assignment to AMR_env
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2022-10-14 13:02:50 +02:00 |
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dr. M.S. (Matthijs) Berends
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82e3198315
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add `add_custom_antimicrobials()`
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2022-10-10 20:20:39 +02:00 |
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dr. M.S. (Matthijs) Berends
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43c638d122
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add `mo_current()`
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2022-10-10 10:12:08 +02:00 |
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dr. M.S. (Matthijs) Berends
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b9342d103e
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fix documentation
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2022-10-06 11:33:30 +02:00 |
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Dr. Matthijs Berends
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cd2acc4a29
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New mo algorithm, prepare for 2.0
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2022-10-05 09:12:22 +02:00 |
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dr. M.S. (Matthijs) Berends
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63fe160322
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new rsi_interpretation_history
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2022-09-01 15:20:57 +02:00 |
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dr. M.S. (Matthijs) Berends
|
3fca703fbf
|
new AMR distance function
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2022-08-30 21:48:02 +02:00 |
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dr. M.S. (Matthijs) Berends
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c44ddf272f
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fix for R <= 3.3
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2022-08-28 19:34:04 +02:00 |
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dr. M.S. (Matthijs) Berends
|
71db246d5c
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unit test fix
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2022-08-28 19:17:12 +02:00 |
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dr. M.S. (Matthijs) Berends
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4d050aef7c
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styled, unit test fix
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2022-08-28 10:31:50 +02:00 |
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dr. M.S. (Matthijs) Berends
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303d61b473
|
new tibble export
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2022-08-27 20:49:37 +02:00 |
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dr. M.S. (Matthijs) Berends
|
7226b70c3d
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update languages
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2022-08-20 20:17:14 +02:00 |
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dr. M.S. (Matthijs) Berends
|
680e8e7a41
|
(v1.8.1.9005) as.rsi() fix for EUCAST
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2022-05-10 17:01:37 +02:00 |
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dr. M.S. (Matthijs) Berends
|
d4e22069bc
|
(v1.8.1.9004) fix for table() on MICs
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2022-05-09 21:33:27 +02:00 |
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dr. M.S. (Matthijs) Berends
|
1c891cc90c
|
(v1.8.1.9003) set_mo_source() fix
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2022-05-09 20:36:44 +02:00 |
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dr. M.S. (Matthijs) Berends
|
7b0f1596bd
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(v1.8.0.9010) as.mo improvement
|
2022-03-15 17:35:02 +01:00 |
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dr. M.S. (Matthijs) Berends
|
3b2b2be5f8
|
(v1.8.0.9002) as.rsi() cleanup, more informative warnings
|
2022-03-02 15:38:55 +01:00 |
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dr. M.S. (Matthijs) Berends
|
be792cc9eb
|
(v1.8.0.9000) unit tests for R 3.3
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2022-02-01 17:08:10 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
25cef46c59
|
(v1.8.0) prerelease 1.8.0
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2021-12-23 18:56:28 +01:00 |
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dr. M.S. (Matthijs) Berends
|
3f4ff260d2
|
unit test
|
2021-12-23 15:36:54 +01:00 |
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dr. M.S. (Matthijs) Berends
|
75dac113b6
|
(v1.7.1.9077) skimr support only for newer R versions
|
2021-12-23 13:38:25 +01:00 |
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dr. M.S. (Matthijs) Berends
|
76dee66852
|
(v1.7.1.9074) as.mo() improvement, ASCII replacements for unit tests
|
2021-12-14 22:39:23 +01:00 |
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dr. M.S. (Matthijs) Berends
|
bd4bb1d72f
|
(v1.7.1.9073) as.rsi() fix for UTIs
|
2021-12-14 21:47:14 +01:00 |
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dr. M.S. (Matthijs) Berends
|
0cbf8f48b6
|
(v1.7.1.9071) rsi disk fix
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2021-12-13 11:57:34 +01:00 |
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dr. M.S. (Matthijs) Berends
|
578e7dfee9
|
(v1.7.1.9070) Better WHONET support
|
2021-12-13 10:18:28 +01:00 |
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dr. M.S. (Matthijs) Berends
|
1e66a3daf3
|
(v1.7.1.9068) new logo, unit tests
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2021-12-12 11:07:02 +01:00 |
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dr. M.S. (Matthijs) Berends
|
56f1ce328a
|
(v1.7.1.9067) Support for Swedish and Russian
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2021-12-12 09:42:03 +01:00 |
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dr. M.S. (Matthijs) Berends
|
e0a2634f14
|
(v1.7.1.9065) unit tests
|
2021-12-11 15:13:44 +01:00 |
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dr. M.S. (Matthijs) Berends
|
e18c49ed93
|
(v1.7.1.9063) not_intrinsic_resistant
|
2021-12-09 10:48:25 +01:00 |
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dr. M.S. (Matthijs) Berends
|
1fa3fc6af2
|
(v1.7.1.9061) bugfix set_ab_names
|
2021-12-05 23:21:59 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
7965468ccd
|
(v1.7.1.9058) vars selection for set_ab_names()
|
2021-12-05 22:06:45 +01:00 |
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dr. M.S. (Matthijs) Berends
|
5375f75829
|
(v1.7.1.9056) unit tests
|
2021-11-29 11:55:18 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
37e6e35ec4
|
(v1.7.1.9051) updated taxonomy, updated git branch name
|
2021-10-06 13:23:57 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
2bcf28281d
|
(v1.7.1.9049) unit tests
|
2021-10-05 09:58:08 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
d1b16ce641
|
(v1.7.1.9048) unit tests
|
2021-10-04 10:22:10 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
93a4734b44
|
(v1.7.1.9040) Support for Danish
|
2021-09-29 12:12:35 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
5f433d6e5c
|
(v1.7.1.9039) reinitiate all units tests
|
2021-09-03 13:08:36 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
bcab74fb6d
|
(v1.7.1.9037) dplyr grouping fix on windows?
|
2021-08-31 17:06:44 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
953dfac9e5
|
(v1.7.1.9036) dplyr grouping fix on windows?
|
2021-08-30 16:49:46 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
986bd826ee
|
(v1.7.1.9035) dplyr grouping fix on windows?
|
2021-08-30 15:43:12 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
e6ce25162e
|
(v1.7.1.9031) dplyr grouping fix on windows?
|
2021-08-30 14:07:46 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
d6a916d70b
|
(v1.7.1.9030) unit test
|
2021-08-29 23:50:45 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
e4de7f5055
|
(v1.7.1.9028) fix unit test
|
2021-08-20 00:08:31 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
41f35c73cd
|
(v1.7.1.9027) fix unit test
|
2021-08-19 23:56:18 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
2ab21b7af3
|
(v1.7.1.9026) updated DDDs
|
2021-08-19 23:43:02 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
1b62bab007
|
(v1.7.1.9025) unit tests
|
2021-08-18 23:19:38 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
a2d249962f
|
(v1.7.1.9023) Removed filter_ functions, new set_ab_names(), ATC code update, ab selector update, fixes #46 and fixed #47
|
2021-08-16 21:54:34 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
4e1efd902c
|
(v1.7.1.9022) rely on vctrs for ab selectors
|
2021-07-23 21:42:11 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
6838f03bde
|
(v1.7.1.9020) autoplot generics
|
2021-07-12 20:24:49 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
5ccb330b42
|
(v1.7.1.9018) translation fix
|
2021-07-11 13:20:45 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
b228eb1536
|
(v1.7.1.9016) only_treatable ab selectors
|
2021-07-08 22:23:28 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
625a6fb304
|
(v1.7.1.9015) removed S3 taxonomic_name again
|
2021-07-07 20:34:05 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
16b4c74d44
|
(v1.7.1.9013) temp fix for ggplot2 bug #4511
|
2021-07-04 22:10:46 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
350dbe6a11
|
(v1.7.1.9012) update unit tests
|
2021-07-04 20:25:30 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
c8491d07f8
|
(v1.7.1.9008) unit tests
|
2021-06-23 10:19:38 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
95050ee3e0
|
(v1.7.1.9007) Updated antibiotics dataset, fixes #41
|
2021-06-23 10:03:17 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
d04e83f494
|
(v1.7.1.9005) ab class selectors for R-3.0 and R-3.1
|
2021-06-22 12:16:42 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
99be4c7e7e
|
(v1.7.1.9002) ab class selectors update
|
2021-06-14 22:04:04 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
1908e7cc7a
|
(v1.7.1.9000) ab_class update, unit tests
|
2021-06-04 21:07:55 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
279376fccb
|
(v1.7.0.9002) old MO codes
|
2021-06-01 16:36:33 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
f406319503
|
(v1.7.0.9000) package size
|
2021-05-30 22:14:38 +02:00 |