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mirror of https://github.com/msberends/AMR.git synced 2024-12-28 05:26:12 +01:00
Commit Graph

80 Commits

Author SHA1 Message Date
fab64e6728 read.4D improvements 2018-11-15 12:42:35 +01:00
6b0f4ffbd4 new kingdom 2018-11-09 13:11:54 +01:00
40a159e78d more unit tests 2018-11-02 10:27:57 +01:00
5476fecc73 eucast update 2018-11-01 20:23:33 +01:00
9cd4ab928a speed improvement as.mo, freq title 2018-10-31 12:10:49 +01:00
1bf8dc2983 as.mo speedup: assigned to namespace 2018-10-29 17:26:17 +01:00
86b03577a7 fix for as.mo, added also_single_tested 2018-10-19 13:53:31 +02:00
b464dd524a new verbose 2018-10-19 00:17:03 +02:00
5b5b95a47b count_all and some fixes 2018-10-12 16:35:18 +02:00
67521394f6 more unit tests 2018-10-09 15:41:44 +02:00
95c9fdc552 CRAN fixes for release 0.4.0
https://cran.r-project.org/web/checks/check_results_AMR.html
2018-10-09 13:53:33 +02:00
6d761436f7 benchmarks on readme and speed improvement for direct mo codes 2018-10-01 16:26:02 +02:00
ed17db0263 renamed year columns to ref 2018-10-01 14:44:40 +02:00
3119a221e5 authors from ITIS, diff for freq 2018-10-01 11:39:43 +02:00
2b0080995e speed improvement for as.mo, more old taxonomic names 2018-09-27 23:23:48 +02:00
450992baea new: 1680 old taxonomic names 2018-09-25 16:44:40 +02:00
9c566585b0 first inclusion of ITIS data 2018-09-24 23:33:29 +02:00
b792a2754e added prevalence column and alterted as.mo algorith to use it, added ab_name as alias 2018-09-16 16:43:29 +02:00
b0ca49d68d small improvement for is.rsi.eligible, more unit tests 2018-09-14 11:54:01 +02:00
cf5711fb0b algorithm improvement 2018-09-14 10:31:21 +02:00
cb0d74a4f0 support for French and Italian, added quote to freq 2018-09-10 15:45:25 +02:00
b83e6a9380 algoritm improvement, removed all Catabacter except for C. hongkongensis 2018-09-10 11:40:54 +02:00
4816419f0c AI improvements for microorganisms 2018-09-09 12:11:44 +02:00
26f5be0033 support for portuguese, language determination based on system 2018-09-08 16:06:47 +02:00
c5073f2fd1 small fix for microorganisms data set 2018-09-06 16:50:03 +02:00
de36b0be23 fix for empty values in mo_property 2018-09-05 12:21:27 +02:00
e39a9a8b05 added mo_shortname 2018-09-05 10:51:46 +02:00
b388e3fee7 Support for German and Spanish microorganism properties, cleanup 2018-09-04 11:33:30 +02:00
75fe4d401f new MOs, cleanup 2018-09-01 21:19:46 +02:00
5965d3c794 replaced bactid by mo 2018-08-31 13:36:19 +02:00