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AMR
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14 Commits

Author SHA1 Message Date
dr. M.S. (Matthijs) Berends 19ccc51f40 remove clipboard functions 2018-05-01 09:36:45 +02:00
dr. M.S. (Matthijs) Berends 970e3ed7f1 EUCAST rules for MDRO 2018-04-25 15:33:58 +02:00
dr. M.S. (Matthijs) Berends a814d82b4b try to support older R versions 2018-04-18 14:50:16 +02:00
dr. M.S. (Matthijs) Berends 2509e2413d MDRO, freq tables, new print format for tibbles 2018-04-18 12:24:54 +02:00
MS Berends 39eb307968
Remove Windows only function 2018-03-23 14:58:46 +01:00
dr. M.S. (Matthijs) Berends 53464ff1c8
- For functions `first_isolate`, `EUCAST_rules` the antibiotic column names are case-insensitive 
- Functions `first_isolate`, `EUCAST_rules` and `rsi_predict` supports tidyverse-like evaluation of parameters (no need to quote columns them anymore)
- Functions `clipboard_import` and `clipboard_export` as helper functions to quickly copy and paste from/to software like Excel and SPSS
- Renamed dataset `bactlist` to `microorganisms`
 2018-03-23 14:46:02 +01:00
dr. M.S. (Matthijs) Berends dd2517ecb7
- Added new algorithm to determine weighted isolates, can now be `points` or `keyantibiotics, see `?first_isolate` 
- Function `first_isolate` supports tidyverse-like evaluation of parameters (no need to quote them anymore)
- Functions `as.rsi` and `as.mic` now add the package name and version as attribute
 2018-03-19 20:39:23 +01:00
dr. M.S. (Matthijs) Berends 502a44eb25
- Added new function `guess_bactid` to determine the ID of a microorganism based on genus/species 
- Renamed `ablist` to `antibiotics`
- Added support for character vector in join functions
- Altered `%like%` to make it case insensitive
 2018-03-19 12:43:22 +01:00
dr. M.S. (Matthijs) Berends 46db3f7b13
import from graphics 2018-03-13 15:40:10 +01:00
dr. M.S. (Matthijs) Berends 04fc3573ec
add barplots 2018-03-13 14:34:10 +01:00
dr. M.S. (Matthijs) Berends d36a391747
export first_isolate 2018-02-26 12:15:52 +01:00
dr. M.S. (Matthijs) Berends d8da8daf9a
First CRAN submission edits 2018-02-22 20:48:48 +01:00
dr. M.S. (Matthijs) Berends ab0503f8b8
abname, logo 2018-02-21 12:10:00 +01:00
dr. M.S. (Matthijs) Berends 62304dc23f
first commit 2018-02-21 11:52:31 +01:00