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mirror of https://github.com/msberends/AMR.git synced 2024-12-25 18:46:11 +01:00
Commit Graph

823 Commits

Author SHA1 Message Date
faca6d608a mean AMR distance 2022-10-21 16:02:14 +02:00
178ab5e5ff mean AMR distance 2022-10-21 15:59:31 +02:00
4bebba3610 fix for scoped dplyr verbs 2022-10-21 15:13:19 +02:00
aa2c0639d0 add confidence intervals (fixed #70), remove combine_IR 2022-10-20 16:08:01 +02:00
85e2fbe4a3 remove warnings from unit tests 2022-10-19 11:47:57 +02:00
f203928f7e coercion fixes 2022-10-19 06:59:36 +02:00
3fc39198d0 unit test fix 2022-10-18 23:03:16 +02:00
e5e6d2200d fix add manual ab 2022-10-18 22:53:38 +02:00
ad68b50ecd custom ab fix 2022-10-15 15:20:13 +02:00
Dr. Matthijs Berends
85ed7ea5f0
more robust install check 2022-10-14 15:45:20 +02:00
76bcd3528c move object assignment to AMR_env 2022-10-14 13:02:50 +02:00
dfae4c7e7d fast-forward from pull
Merge branch 'main' of https://github.com/msberends/AMR into main

# Conflicts:
#	DESCRIPTION
#	R/add_custom_antimicrobials.R
2022-10-11 10:53:51 +02:00
33227a5d90 support ab selectors for manual AB codes 2022-10-11 10:49:55 +02:00
57d66cd9d0 doc fix 2022-10-10 21:38:39 +02:00
955f9d7020 documentation fix 2022-10-10 21:03:39 +02:00
82e3198315 add add_custom_antimicrobials() 2022-10-10 20:20:39 +02:00
4fe90092c7 fix for NA in as.ab() 2022-10-10 15:44:59 +02:00
43c638d122 add mo_current() 2022-10-10 10:12:08 +02:00
b753b84128 fix for mo type translation 2022-10-06 12:11:51 +02:00
b9342d103e fix documentation 2022-10-06 11:33:30 +02:00
Dr. Matthijs Berends
cd2acc4a29
New mo algorithm, prepare for 2.0 2022-10-05 09:12:22 +02:00
63fe160322 new rsi_interpretation_history 2022-09-01 15:20:57 +02:00
3fca703fbf new AMR distance function 2022-08-30 21:48:02 +02:00
fbd5d32541 small fixes 2022-08-29 09:35:36 +02:00
e7af5fc716 fix AMR vignette 2022-08-28 22:38:08 +02:00
2ed5f13880 Fixes #57 2022-08-28 21:13:26 +02:00
c44ddf272f fix for R <= 3.3 2022-08-28 19:34:04 +02:00
71db246d5c unit test fix 2022-08-28 19:17:12 +02:00
f781998904 amoxicillin interpretation fix 2022-08-28 11:17:53 +02:00
4d050aef7c styled, unit test fix 2022-08-28 10:31:50 +02:00
303d61b473 new tibble export 2022-08-27 20:49:37 +02:00
3864ab2fb8 Feather and Parquet files 2022-08-26 22:25:15 +02:00
bdbc112f99 website update 2022-08-21 17:22:34 +02:00
d6676e9443 disk documentation fix 2022-08-21 16:52:09 +02:00
952d16de33 new, automated website 2022-08-21 16:37:20 +02:00
7226b70c3d update languages 2022-08-20 20:17:14 +02:00
3f2f60ab77 language updates 2022-08-19 12:33:14 +02:00
ab97268f4c (v1.8.1.9014) add Toxoplasma 2022-08-12 23:27:15 +02:00
7f981e7778 (v1.8.1.9013) add Toxoplasma 2022-06-10 13:15:23 +02:00
b84d647cac (v1.8.1.9012) update prevalence of some genera 2022-06-03 13:28:55 +02:00
70a07bad39 (v1.8.1.9010) random when pkg not loaded 2022-05-16 12:52:50 +02:00
2c5bc73ed6 (v1.8.1.9009) random when pkg not loaded 2022-05-16 09:29:46 +02:00
6de5375256 (v1.8.1.9007) website update 2022-05-11 10:10:31 +02:00
859224e9d0 (v1.8.1.9006) added EUCAST 2022 and CLSI 2022 2022-05-10 21:34:30 +02:00
680e8e7a41 (v1.8.1.9005) as.rsi() fix for EUCAST 2022-05-10 17:01:37 +02:00
d4e22069bc (v1.8.1.9004) fix for table() on MICs 2022-05-09 21:33:27 +02:00
1c891cc90c (v1.8.1.9003) set_mo_source() fix 2022-05-09 20:36:44 +02:00
152db9d1b5 (v1.8.1.9002) fix for table() on MICs 2022-05-09 17:08:40 +02:00
4754848e96 (v1.8.1.9001) update unit tests, fixes #53 2022-04-08 11:02:45 +02:00
ccb09706e4 v1.8.1 2022-03-24 23:05:04 +01:00