1
0
mirror of https://github.com/msberends/AMR.git synced 2024-12-26 09:26:13 +01:00
Commit Graph

121 Commits

Author SHA1 Message Date
7b00b4f34a unit tests 2023-01-24 14:52:15 +01:00
830c67f1bf documentation, unit tests 2023-01-24 10:20:27 +01:00
19fd0ef121 sort sir history 2023-01-23 15:01:21 +01:00
Dr. Matthijs Berends
98e62c9af2
Replace RSI with SIR 2023-01-21 23:47:20 +01:00
24b12024ce unit test fix 2023-01-20 09:45:03 +01:00
593d740b84 documentation, file permissions 2023-01-19 12:54:53 +01:00
33f269e2f4 contrib update 2023-01-12 23:16:05 +01:00
51906d6f97 no overwriting taxonomy when adding microorganisms 2023-01-12 11:33:28 +01:00
268ec31d92 unit tests 2023-01-05 18:21:48 +01:00
a98d0d75ea styler dep 2023-01-05 14:46:44 +01:00
6f4bb603ec unit tests 2022-12-20 22:18:50 +01:00
f0a2cdbf5e update mo algorithm 2022-12-20 16:14:04 +01:00
b1b7534c78 incorporate Bartlett et al (2022) 2022-12-19 15:32:41 +01:00
23fe427cbc Fixes for Salmonella 2022-12-17 14:31:33 +01:00
5f3a7694aa microorganisms update, added Salmonella groups 2022-12-16 16:10:43 +01:00
8da2467209 updated taxonomy 2022-12-12 00:14:56 +01:00
eed1c14b96 website update 2022-12-11 11:44:29 +01:00
f6862a139d expert rules 12.0 2022-11-14 15:20:39 +01:00
Dr. Matthijs Berends
496c08d851
Implement extensive support for antiviral agents support (#77) 2022-11-13 08:46:10 +01:00
9444ed6d1d fix antibiotics error 2022-10-30 21:05:46 +01:00
d40e0ef20b completely updated antibiotics 2022-10-30 14:31:45 +01:00
3d9faf89cf ATC and DDD update 2022-10-29 19:01:23 +02:00
6ad7857d39 fix missing R breakpoints 2022-10-29 14:15:23 +02:00
c2801ba7a1 new rsi_translation 2022-10-22 22:00:15 +02:00
b753b84128 fix for mo type translation 2022-10-06 12:11:51 +02:00
Dr. Matthijs Berends
cd2acc4a29
New mo algorithm, prepare for 2.0 2022-10-05 09:12:22 +02:00
e7af5fc716 fix AMR vignette 2022-08-28 22:38:08 +02:00
303d61b473 new tibble export 2022-08-27 20:49:37 +02:00
3864ab2fb8 Feather and Parquet files 2022-08-26 22:25:15 +02:00
7226b70c3d update languages 2022-08-20 20:17:14 +02:00
3f2f60ab77 language updates 2022-08-19 12:33:14 +02:00
ab97268f4c (v1.8.1.9014) add Toxoplasma 2022-08-12 23:27:15 +02:00
7f981e7778 (v1.8.1.9013) add Toxoplasma 2022-06-10 13:15:23 +02:00
2c5bc73ed6 (v1.8.1.9009) random when pkg not loaded 2022-05-16 09:29:46 +02:00
6de5375256 (v1.8.1.9007) website update 2022-05-11 10:10:31 +02:00
152db9d1b5 (v1.8.1.9002) fix for table() on MICs 2022-05-09 17:08:40 +02:00
1b0983e382 (v1.8.1) prerelease 1.8.1 2022-03-14 16:36:10 +01:00
578e7dfee9 (v1.7.1.9070) Better WHONET support 2021-12-13 10:18:28 +01:00
1e66a3daf3 (v1.7.1.9068) new logo, unit tests 2021-12-12 11:07:02 +01:00
56f1ce328a (v1.7.1.9067) Support for Swedish and Russian 2021-12-12 09:42:03 +01:00
77ba4318ea (v1.7.1.9064) eucast 3.3 for mdro(), major change to repeated calling 2021-12-11 13:41:31 +01:00
c8698347cb (v1.7.1.9055) added EUCAST 3.3 and all LPSN records numbers 2021-11-29 10:38:38 +01:00
694cf5ba77 (v1.7.1.9054) mdro() update - fixes #49, first_isolate() speedup 2021-11-28 23:01:26 +01:00
91149d6d35 (v1.7.1.9052) eucast-update 2021-10-06 16:22:36 +02:00
37e6e35ec4 (v1.7.1.9051) updated taxonomy, updated git branch name 2021-10-06 13:23:57 +02:00
93a4734b44 (v1.7.1.9040) Support for Danish 2021-09-29 12:12:35 +02:00
a2d249962f (v1.7.1.9023) Removed filter_ functions, new set_ab_names(), ATC code update, ab selector update, fixes #46 and fixed #47 2021-08-16 21:54:34 +02:00
4e1efd902c (v1.7.1.9022) rely on vctrs for ab selectors 2021-07-23 21:42:11 +02:00
5ccb330b42 (v1.7.1.9018) translation fix 2021-07-11 13:20:45 +02:00
b228eb1536 (v1.7.1.9016) only_treatable ab selectors 2021-07-08 22:23:28 +02:00