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mirror of https://github.com/msberends/AMR.git synced 2024-12-26 18:06:11 +01:00
Commit Graph

29 Commits

Author SHA1 Message Date
640888f408 (v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update 2024-07-16 14:53:17 +02:00
de17de1be9 (v2.1.1.9048) vctrs update for sir 2024-06-13 20:55:17 +02:00
0d8a91db49 rename pre-commit hook to pre-commit checks (no-check) 2024-04-23 10:55:48 +02:00
b303662ec6 fix veterinary for R<4 2024-02-24 19:26:35 +01:00
ca72a646d0 scientific notation for MICs 2023-10-20 15:45:00 +02:00
7cda9e575b prepare for CRAN 2023-10-20 14:51:48 +02:00
a4e2e25e3f reftbl in plots, speedup for as.sir() and mo_validate 2023-07-10 16:43:46 +02:00
acb534102b new species groups, updated clinical breakpoints 2023-07-08 17:30:05 +02:00
Dr. Matthijs Berends
f065945d7b
Update clinical breakpoints and fix some as.mo() bugs (#117)
* Updates clinical breakpoints EUCAST/CLSI 2023, fixes #102, fixes #112, fixes #113, fixes #114, fixes #115
* docs
* implement ecoffs
* unit tests
2023-06-22 15:10:59 +02:00
9591688811 documentation update 2023-05-27 10:39:22 +02:00
c6135d2082 updated microorganism codes 2023-05-26 16:10:01 +02:00
2007c3eef3 bind_rows 2023-02-10 17:09:48 +01:00
03294c7901 fix for Salmonella group A, unit tests 2023-02-10 16:47:25 +01:00
1a0dc4bf46 revert back to pre-antibiogram 2023-02-09 13:07:39 +01:00
f7dd890b79 fixes 2023-02-06 12:38:52 +01:00
7b00b4f34a unit tests 2023-01-24 14:52:15 +01:00
Dr. Matthijs Berends
98e62c9af2
Replace RSI with SIR 2023-01-21 23:47:20 +01:00
f619fb683b support new mo codes 2022-12-27 15:16:15 +01:00
8da2467209 updated taxonomy 2022-12-12 00:14:56 +01:00
f6862a139d expert rules 12.0 2022-11-14 15:20:39 +01:00
d40e0ef20b completely updated antibiotics 2022-10-30 14:31:45 +01:00
d10651eb26 cleanup 2022-10-22 10:20:09 +02:00
Dr. Matthijs Berends
cd2acc4a29
New mo algorithm, prepare for 2.0 2022-10-05 09:12:22 +02:00
4d050aef7c styled, unit test fix 2022-08-28 10:31:50 +02:00
3864ab2fb8 Feather and Parquet files 2022-08-26 22:25:15 +02:00
ccb09706e4 v1.8.1 2022-03-24 23:05:04 +01:00
25cef46c59 (v1.8.0) prerelease 1.8.0 2021-12-23 18:56:28 +01:00
76dee66852 (v1.7.1.9074) as.mo() improvement, ASCII replacements for unit tests 2021-12-14 22:39:23 +01:00
77ba4318ea (v1.7.1.9064) eucast 3.3 for mdro(), major change to repeated calling 2021-12-11 13:41:31 +01:00