dr. M.S. (Matthijs) Berends
d232666e49
update sir to include interpretation details
2025-08-01 15:15:49 +02:00
dr. M.S. (Matthijs) Berends
fc72cf9324
(v3.0.0.9017) semantic versioning only on branch main
2025-07-28 12:24:52 +02:00
dr. M.S. (Matthijs) Berends
2f866985c9
(v3.0.0.9016) fix for plotting
2025-07-23 22:05:20 +02:00
dr. M.S. (Matthijs) Berends
49274f010b
(v3.0.0.9014) fix plot colours
2025-07-18 15:57:48 +02:00
dr. M.S. (Matthijs) Berends
39ea5f6597
(v3.0.0.9011) allow names for age_groups()
2025-07-17 19:32:46 +02:00
dr. M.S. (Matthijs) Berends
65ec098acf
(v3.0.0.9010) in as.sir(), add note when higher taxonomic levels are used
2025-07-17 19:06:12 +02:00
dr. M.S. (Matthijs) Berends
d94bdd2c6a
(v3.0.0.9008) fix ggplot_sir(), support lighter green for SDD
2025-07-17 17:05:41 +02:00
dr. M.S. (Matthijs) Berends
8dab0a3730
(v3.0.0.9007) allow any tidyselect language in as.sir()
2025-07-17 14:29:35 +02:00
dr. M.S. (Matthijs) Berends
8fd8ee508f
(v3.0.0.9004) random mic fix
2025-06-13 16:12:28 +02:00
dr. M.S. (Matthijs) Berends
72db2b2562
(v3.0.0.9003) eucast_rules fix, new tidymodels integration
2025-06-13 14:03:21 +02:00
dr. M.S. (Matthijs) Berends
3742e9e994
(v3.0.0.9002) website version nr
2025-06-06 09:37:25 +02:00
dr. M.S. (Matthijs) Berends
753f0e1ef9
(v3.0.0.9001) the first fixes
2025-06-04 13:10:20 +02:00
dr. M.S. (Matthijs) Berends
1710e220dd
AMR v3.0\!
2025-06-02 12:11:00 +02:00
dr. M.S. (Matthijs) Berends
79038fed21
(v2.1.1.9290) typo
2025-06-01 16:07:38 +02:00
dr. M.S. (Matthijs) Berends
d384b492cf
(v2.1.1.9289) unit test fix
2025-06-01 16:00:12 +02:00
dr. M.S. (Matthijs) Berends
46f80b1378
(v2.1.1.9288) mdro fix
2025-06-01 15:35:04 +02:00
dr. M.S. (Matthijs) Berends
5667ce3eae
(v2.1.1.9287) fix antibiotics
2025-06-01 12:17:47 +02:00
dr. M.S. (Matthijs) Berends
e70f3de02e
(v2.1.1.9286) deprecate antibiotics better, add ATC for ceftaroline
2025-06-01 11:54:40 +02:00
dr. M.S. (Matthijs) Berends
80f08f91da
(v2.1.1.9285) mdro fix
2025-05-21 16:51:40 +02:00
dr. M.S. (Matthijs) Berends
8d2c5afab6
publish anaconda
2025-05-20 15:05:24 +02:00
dr. M.S. (Matthijs) Berends
4933292639
publish anaconda
2025-05-20 15:00:45 +02:00
dr. M.S. (Matthijs) Berends
29706887b4
publish anaconda
2025-05-20 14:51:09 +02:00
dr. M.S. (Matthijs) Berends
a94452b9be
(v2.1.1.9281) speed improvement is_sir_eligible
2025-05-20 11:31:42 +02:00
dr. M.S. (Matthijs) Berends
26447fe29b
fix website
2025-05-16 17:53:21 +02:00
dr. M.S. (Matthijs) Berends
38cebc1541
(v2.1.1.9279) fix documentation, add foreign S3 exports to functions
2025-05-16 16:55:29 +02:00
dr. M.S. (Matthijs) Berends
139f79d372
(v2.1.1.9278) support AMR selectors in custom MDRO guideline
2025-05-16 11:20:19 +02:00
dr. M.S. (Matthijs) Berends
b8d7c8af7f
(v2.1.1.9277) mdro fix
2025-05-15 13:07:47 +02:00
dr. M.S. (Matthijs) Berends
4b171745de
(v2.1.1.9276) mdro() fix
2025-05-15 10:39:48 +02:00
dr. M.S. (Matthijs) Berends
48a59ee31a
(v2.1.1.9275) include guideline name in MDRO verbose output
2025-05-13 18:56:12 +02:00
dr. M.S. (Matthijs) Berends
7d45ca9fbf
(v2.1.1.9274) Improve is_sir_eligible, rename verbose MDRO output
2025-05-12 12:35:11 +02:00
dr. M.S. (Matthijs) Berends
3f9012dc47
(v2.1.1.9273) fix as.ab() / as.av()
2025-05-05 11:45:33 +02:00
dr. M.S. (Matthijs) Berends
fcd8b95e51
(v2.1.1.9272) mo codes sensititre
2025-05-04 18:50:25 +02:00
dr. M.S. (Matthijs) Berends
a778eb9bcf
(v2.1.1.9272) (v2.1.1.9271) add sensititre AB and animal codes
2025-05-04 16:40:08 +02:00
dr. M.S. (Matthijs) Berends
dc5559a2c4
(v2.1.1.9270) Add support for Korean, fix ATCs
2025-05-04 14:24:43 +02:00
dr. M.S. (Matthijs) Berends
b8f0f64287
(v2.1.1.9269) Support 7 new languages
2025-05-02 19:25:19 +02:00
dr. M.S. (Matthijs) Berends
2461631bce
(v2.1.1.9268) WISCA vignette, antibiogram sorting, fix translations
2025-05-01 14:45:21 +02:00
dr. M.S. (Matthijs) Berends
5e6bbdf3d1
(v2.1.1.9267) update ATCs
2025-05-01 11:48:49 +02:00
dr. M.S. (Matthijs) Berends
407bc17311
(v2.1.1.9263) small as.sir fix
2025-04-29 16:51:29 +02:00
dr. M.S. (Matthijs) Berends
30caa5e654
(v2.1.1.9262) fix knit printing
2025-04-29 16:31:38 +02:00
dr. M.S. (Matthijs) Berends
6013a7edc5
(v2.1.1.9261) fix knit printing antibiograms
2025-04-29 16:29:12 +02:00
dr. M.S. (Matthijs) Berends
faa9ae0d85
(v2.1.1.9260) fix antibiogram
2025-04-29 16:15:18 +02:00
dr. M.S. (Matthijs) Berends
6819473457
(v2.1.1.9259) Parallel computing for R < 4
2025-04-27 20:25:39 +02:00
dr. M.S. (Matthijs) Berends
52cd3e88cd
(v2.1.1.9258) fix for R <= 3.6
2025-04-27 17:53:13 +02:00
dr. M.S. (Matthijs) Berends
d2b3937a90
(v2.1.1.9257) adjust unit tests
2025-04-27 09:58:19 +02:00
dr. M.S. (Matthijs) Berends
f340e257fa
(v2.1.1.9256) unit tests
2025-04-26 21:29:50 +02:00
dr. M.S. (Matthijs) Berends
d166aa2c1d
(v2.1.1.9255) fix examples
2025-04-26 16:35:14 +02:00
dr. M.S. (Matthijs) Berends
92316d5ddc
(v2.1.1.9254) fix antimicrobial synonyms
2025-04-26 16:23:14 +02:00
dr. M.S. (Matthijs) Berends
4e7fca3b38
(v2.1.1.9253) parallel computing
2025-04-26 15:47:00 +02:00
dr. M.S. (Matthijs) Berends
abee2a954e
(v2.1.1.9252) fix MIC for >= and <=
2025-04-25 10:19:40 +02:00
dr. M.S. (Matthijs) Berends
6135805455
(v2.1.1.9251) fix colour on GitHub docs
2025-04-21 16:04:01 +02:00
dr. M.S. (Matthijs) Berends
4a336d040c
(v2.1.1.9250) Automated README and index.md
2025-04-21 15:37:26 +02:00
dr. M.S. (Matthijs) Berends
be13934fe7
(v2.1.1.9249) unit test
2025-04-20 17:49:47 +02:00
dr. M.S. (Matthijs) Berends
9e64d7708e
(v2.1.1.9248) unit test fix
2025-04-20 15:27:36 +02:00
dr. M.S. (Matthijs) Berends
ea443f7483
(v2.1.1.9247) CLSI/EUCAST 2025!
2025-04-20 12:55:31 +02:00
dr. M.S. (Matthijs) Berends
0bab49ff86
(v2.1.1.9246) website fix
2025-04-19 16:23:17 +02:00
dr. M.S. (Matthijs) Berends
f310318c5f
repo fix
2025-04-19 15:59:52 +02:00
dr. M.S. (Matthijs) Berends
492fe6872f
(v2.1.1.9244) automated GPT training data
2025-04-19 15:57:12 +02:00
dr. M.S. (Matthijs) Berends
ca00ed468e
(v2.1.1.9243) fix sir documentation
2025-04-18 16:32:45 +02:00
dr. M.S. (Matthijs) Berends
29b0ef1089
(v2.1.1.9242) sir log
2025-04-18 16:03:50 +02:00
dr. M.S. (Matthijs) Berends
579025f678
(v2.1.1.9241) fix sir
2025-04-18 13:25:59 +02:00
dr. M.S. (Matthijs) Berends
cf91e677c6
(v2.1.1.9240) fix sir interpretation
2025-04-16 15:22:12 +02:00
dr. M.S. (Matthijs) Berends
ec937e8179
(v2.1.1.9239) documentation
2025-04-14 09:40:35 +02:00
dr. M.S. (Matthijs) Berends
7c3320b967
update reproduction scripts links
2025-04-13 10:02:47 +02:00
dr. M.S. (Matthijs) Berends
d31371613e
(v2.1.1.9237) clean-up
2025-04-13 09:59:40 +02:00
dr. M.S. (Matthijs) Berends
40d7a971c3
(v2.1.1.9236) documentation
2025-04-12 11:46:42 +02:00
dr. M.S. (Matthijs) Berends
36fd99e1f4
(v2.1.1.9235) New website!
2025-04-08 15:54:30 +01:00
dr. M.S. (Matthijs) Berends
a905303296
(v2.1.1.9234) fix CLSI
2025-04-07 17:36:01 +01:00
dr. M.S. (Matthijs) Berends
1fdab84103
(v2.1.1.9233) chore: make all argument texts full sentences
2025-03-31 14:53:24 +02:00
dr. M.S. (Matthijs) Berends
63099cd81e
(v2.1.1.9232) is.mic() iteration, documentation cleanup
2025-03-31 10:51:31 +02:00
dr. M.S. (Matthijs) Berends
5f5b77bfaf
(v2.1.1.9231) Update EUCAST vignette
2025-03-29 18:03:31 +01:00
dr. M.S. (Matthijs) Berends
b972bbb96f
(v2.1.1.9230) deprecated resistance_predict(), data set folder name without space
2025-03-28 16:48:56 +01:00
dr. M.S. (Matthijs) Berends
bd873ac1bc
(v2.1.1.9229) unit tests
2025-03-28 11:40:09 +01:00
dr. M.S. (Matthijs) Berends
49da312506
(v2.1.1.9228) repo cleaning
2025-03-28 11:17:49 +01:00
dr. M.S. (Matthijs) Berends
d77ad6bd6e
(v2.1.1.9227) unit test fixes
2025-03-27 15:36:27 +01:00
dr. M.S. (Matthijs) Berends
969a42cc8c
(v2.1.1.9226) update intrinsic_resistant, unit test fixes
2025-03-27 15:20:22 +01:00
dr. M.S. (Matthijs) Berends
e6f88241b2
(v2.1.1.9225) fix geom_hline()/_vline() in MIC plotting, add EUCAT 1.2 in full, add London contribs, fix mo codes, add Kleb pneu complex
2025-03-26 17:19:17 +01:00
dr. M.S. (Matthijs) Berends
8deaf2c8eb
(v2.1.1.9224) skip tests on cran
2025-03-20 23:29:21 +01:00
dr. M.S. (Matthijs) Berends
bb110646db
(v2.1.1.9223) allow + ab
2025-03-20 22:56:32 +01:00
dr. M.S. (Matthijs) Berends
d147d6602d
(v2.1.1.9222) python bump
2025-03-20 22:02:44 +01:00
dr. M.S. (Matthijs) Berends
43660f2b18
(v2.1.1.9221) allow combined numeric MIC values
2025-03-20 21:47:45 +01:00
dr. M.S. (Matthijs) Berends
79f56ad8a4
(v2.1.1.9220) unit test
2025-03-19 16:13:43 +01:00
dr. M.S. (Matthijs) Berends
755e6f43b7
(v2.1.1.9219) unit tests
2025-03-19 16:06:23 +01:00
dr. M.S. (Matthijs) Berends
287e361a54
(v2.1.1.9218) Fix unit tests
2025-03-19 16:05:24 +01:00
dr. M.S. (Matthijs) Berends
4dc4398ad1
(v2.1.1.9217) allow + in amr selectors
2025-03-18 16:35:22 +01:00
dr. M.S. (Matthijs) Berends
8d8444c607
(v2.1.1.9216) PyPI access token
2025-03-17 08:56:27 +01:00
dr. M.S. (Matthijs) Berends
1f35ff2b0b
(v2.1.1.9215) python token
2025-03-16 18:50:37 +01:00
dr. M.S. (Matthijs) Berends
a092eb3ce3
(v2.1.1.9214) aaaaaand another attempt
2025-03-16 14:03:40 +01:00
dr. M.S. (Matthijs) Berends
c614d66495
(v2.1.1.9213) snapshots
2025-03-16 13:41:08 +01:00
dr. M.S. (Matthijs) Berends
7a39439fa9
(v2.1.1.9212) unit tests
2025-03-16 13:25:54 +01:00
dr. M.S. (Matthijs) Berends
98bc83da73
(v2.1.1.9211) fix python wrapper
2025-03-16 13:11:26 +01:00
dr. M.S. (Matthijs) Berends
ceb3e6675d
(v2.1.1.9210) unit tsts
2025-03-15 20:58:05 +01:00
dr. M.S. (Matthijs) Berends
5c11b924de
(v2.1.1.9209) unit tests
2025-03-15 20:46:33 +01:00
dr. M.S. (Matthijs) Berends
6bdc798734
(v2.1.1.9208) unit tests
2025-03-15 20:30:29 +01:00
dr. M.S. (Matthijs) Berends
d717bd3f87
(v2.1.1.9207) fix PythonPackage
2025-03-15 16:19:03 +01:00
dr. M.S. (Matthijs) Berends
7631e82ae6
(v2.1.1.9206) update precommit hook
2025-03-15 16:17:27 +01:00
dr. M.S. (Matthijs) Berends
ede1cdfd99
(v2.1.1.9205) Fix python wrapper
2025-03-15 16:14:29 +01:00
dr. M.S. (Matthijs) Berends
afb97ad38f
(v2.1.1.9204) move python package to separate branch
2025-03-15 16:02:57 +01:00
dr. M.S. (Matthijs) Berends
7f1ae1f474
(v2.1.1.9203) unit tests
2025-03-15 13:25:23 +01:00
dr. M.S. (Matthijs) Berends
f758ab60f3
run MICs and disks if detected
2025-03-14 17:23:24 +01:00
dr. M.S. (Matthijs) Berends
6cc273bbc7
(v2.1.1.9201) oops
2025-03-14 17:12:12 +01:00
