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36fd99e1f4
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(v2.1.1.9235) New website!
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2025-04-08 15:54:30 +01:00 |
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1fdab84103
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(v2.1.1.9233) chore: make all argument texts full sentences
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2025-03-31 14:53:24 +02:00 |
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63099cd81e
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(v2.1.1.9232) is.mic() iteration, documentation cleanup
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2025-03-31 10:51:31 +02:00 |
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49da312506
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(v2.1.1.9228) repo cleaning
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2025-03-28 11:17:49 +01:00 |
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969a42cc8c
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(v2.1.1.9226) update intrinsic_resistant, unit test fixes
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2025-03-27 15:20:22 +01:00 |
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f7938289eb
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(v2.1.1.9186) replace antibiotics with antimicrobials!
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2025-03-07 20:43:26 +01:00 |
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07efc292bc
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(v2.1.1.9163) cleanup
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2025-02-27 14:04:29 +01:00 |
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8ba2e4ed94
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(v2.1.1.9141) new AMR selectors, eucast overwrite arg
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2025-02-07 18:01:22 +01:00 |
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baea4323c7
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(v2.1.1.9140) WISCA fix
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2025-02-05 20:48:35 +01:00 |
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66833b4f5a
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(v2.1.1.9126) implemented WISCA! Also added top_n_microorganisms() and fixed Python wrapper
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2025-01-26 23:01:17 +01:00 |
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ac1c40d8bb
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(v2.1.1.9081) HUGE microorganisms update for fungi!
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2024-09-29 22:17:56 +02:00 |
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1ca40e8d67
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(v2.1.1.9079) fix for uti in as.sir()
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2024-09-24 15:34:12 +02:00 |
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ef8ef28650
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(v2.1.1.9072)
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2024-09-19 11:46:17 +02:00 |
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83907c9c65
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add files (no-verify)
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2024-07-17 14:31:09 +02:00 |
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640888f408
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(v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update
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2024-07-16 14:53:17 +02:00 |
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2899b3c840
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new mo_group_members()
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2024-04-19 10:18:21 +02:00 |
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7be4dabbc0
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support veterinary MIC/disk translation
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2024-02-24 15:16:52 +01:00 |
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ca72a646d0
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scientific notation for MICs
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2023-10-20 15:45:00 +02:00 |
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a4e2e25e3f
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reftbl in plots, speedup for as.sir() and mo_validate
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2023-07-10 16:43:46 +02:00 |
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c6135d2082
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updated microorganism codes
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2023-05-26 16:10:01 +02:00 |
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91fa73dedf
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add oxygen tolerance
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2023-05-11 21:56:27 +02:00 |
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dad25302f2
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make rsi work in more cases, documentation update
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2023-02-22 14:38:57 +01:00 |
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03294c7901
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fix for Salmonella group A, unit tests
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2023-02-10 16:47:25 +01:00 |
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1a0dc4bf46
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revert back to pre-antibiogram
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2023-02-09 13:07:39 +01:00 |
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9e99e66f01
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use dplyr where available, new antibiogram() for WISCA, fixed Salmonella Typhi/Paratyphi
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2023-02-06 11:57:22 +01:00 |
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830c67f1bf
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documentation, unit tests
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2023-01-24 10:20:27 +01:00 |
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eef00069fd
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add all options to documentation
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2023-01-23 20:07:57 +01:00 |
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19fd0ef121
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sort sir history
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2023-01-23 15:01:21 +01:00 |
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Dr. Matthijs Berends
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98e62c9af2
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Replace RSI with SIR
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2023-01-21 23:47:20 +01:00 |
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593d740b84
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documentation, file permissions
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2023-01-19 12:54:53 +01:00 |
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1029aa2fdc
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algorithm improvement
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2023-01-07 14:53:14 +01:00 |
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2375bfdcb5
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documentation
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2023-01-07 01:51:19 +01:00 |
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84ed8c32bb
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documentation
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2023-01-06 19:21:04 +01:00 |
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86e28bafce
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add mo_pathogenicity
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2023-01-06 13:35:37 +01:00 |
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f0a2cdbf5e
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update mo algorithm
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2022-12-20 16:14:04 +01:00 |
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b1b7534c78
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incorporate Bartlett et al (2022)
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2022-12-19 15:32:41 +01:00 |
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8da2467209
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updated taxonomy
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2022-12-12 00:14:56 +01:00 |
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eed1c14b96
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website update
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2022-12-11 11:44:29 +01:00 |
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56dad34e68
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update prevalence with new phyla
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2022-12-09 13:37:08 +01:00 |
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510140fc55
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Updated mo_gramstain() to reflect current taxonomy, fixes #83
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2022-12-09 10:30:25 +01:00 |
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7ca44fb756
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cleanup and new intro logo
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2022-11-13 13:44:25 +01:00 |
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d40e0ef20b
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completely updated antibiotics
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2022-10-30 14:31:45 +01:00 |
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43c638d122
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add mo_current()
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2022-10-10 10:12:08 +02:00 |
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b753b84128
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fix for mo type translation
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2022-10-06 12:11:51 +02:00 |
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b9342d103e
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fix documentation
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2022-10-06 11:33:30 +02:00 |
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Dr. Matthijs Berends
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cd2acc4a29
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New mo algorithm, prepare for 2.0
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2022-10-05 09:12:22 +02:00 |
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4d050aef7c
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styled, unit test fix
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2022-08-28 10:31:50 +02:00 |
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303d61b473
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new tibble export
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2022-08-27 20:49:37 +02:00 |
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952d16de33
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new, automated website
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2022-08-21 16:37:20 +02:00 |
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ccb09706e4
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v1.8.1
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2022-03-24 23:05:04 +01:00 |
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