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7b6dd676f7
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(v1.3.0.9018) language corrections
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2020-09-14 12:21:23 +02:00 |
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0f6760d427
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(v1.3.0.9017) small fix
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2020-09-12 13:54:21 +02:00 |
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3ff871afeb
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(v1.3.0.9016) mo_uncertainties() overhaul
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2020-09-12 08:49:01 +02:00 |
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68e9cb78e9
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(v1.3.0.9015) as.mo() speedup for valid taxonomic names
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2020-09-03 20:59:21 +02:00 |
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c4b87fe241
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(v1.3.0.9014) as.mo() speed improvement
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2020-09-03 12:31:48 +02:00 |
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18e52f2725
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(v1.3.0.9013) data sets vignette update
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2020-08-29 21:52:51 +02:00 |
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4f72b3bfc4
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(v1.3.0.9012) data sets vignette update
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2020-08-29 21:41:46 +02:00 |
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50b953b141
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(v1.3.0.9011) suggests pkg update
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2020-08-29 12:04:23 +02:00 |
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74a172ef55
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(v1.3.0.9010) S3 extensions without dependencies
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2020-08-28 21:55:47 +02:00 |
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81af0b001c
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(v1.3.0.9009) documentation update
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2020-08-26 16:13:40 +02:00 |
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9b8db57c65
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(v1.3.0.9008) also tibble printing for ab
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2020-08-26 15:34:12 +02:00 |
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5e45fdcf2a
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(v1.3.0.9007) tibble printing
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2020-08-26 11:33:54 +02:00 |
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c8c8bb4e3a
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(v1.3.0.9006) website update
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2020-08-21 11:40:13 +02:00 |
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818d0441e0
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(v1.3.0.9005) website update
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2020-08-17 21:49:58 +02:00 |
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dab017a50f
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(v1.3.0.9004) data sets, as.disk() improvement
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2020-08-16 21:38:42 +02:00 |
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e73f0e211c
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(v1.3.0.9003) as.rsi() speed improvement
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2020-08-15 12:54:47 +02:00 |
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08d62bb5d5
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(v1.3.0.9002) intrinsic_resistant data set
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2020-08-14 13:36:10 +02:00 |
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7d16bec21f
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(v1.3.0.9001) website update
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2020-08-10 12:46:03 +02:00 |
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0d9602a6a9
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(v1.3.0.9000) support across() in as.rsi()
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2020-08-10 11:44:58 +02:00 |
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c5f7294381
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(v1.3.0) skip more CRAN tests
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2020-07-31 10:50:08 +02:00 |
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8ff46eefe9
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(v1.3.0) small MIC fix
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2020-07-30 12:37:01 +02:00 |
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ea4e5e5b81
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(v1.3.0) v1.3.0
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2020-07-29 13:48:50 +02:00 |
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de0f7b8950
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(v1.2.0.9040) conserve_capped_values for as.rsi()
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2020-07-29 12:47:58 +02:00 |
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e7def0aa4c
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(v1.2.0.9039) conserve_capped_values for as.rsi()
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2020-07-29 11:46:59 +02:00 |
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453f7f210b
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(v1.2.0.9038) CLSI 2019 fix
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2020-07-29 10:33:47 +02:00 |
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1b65d76cfb
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(v1.2.0.9037) survey on website
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2020-07-28 18:39:57 +02:00 |
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ab2b359e6b
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(v1.2.0.9036) unit test fix
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2020-07-22 12:29:51 +02:00 |
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09fba38ea6
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(v1.2.0.9035) as.mo() speed improvement
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2020-07-22 10:24:23 +02:00 |
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6ab468362d
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(v1.2.0.9034) code cleaning
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2020-07-13 09:17:24 +02:00 |
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c0cf7ab02b
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(v1.2.0.9033) speed improvement mdro(), filter_ab_class()
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2020-07-12 11:43:31 +02:00 |
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1d66b5c43c
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(v1.2.0.9032) Permanently move to GitHub
|
2020-07-09 20:07:39 +02:00 |
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a438dcc884
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(v1.2.0.9031) GitHub Actions
|
2020-07-09 16:11:56 +02:00 |
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7baa9d3658
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(v1.2.0.9030) GitHub Actions
|
2020-07-09 14:12:11 +02:00 |
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cf3c3ee8f7
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(v1.2.0.9029) GitHub actions
|
2020-07-08 22:55:17 +02:00 |
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d39d32448b
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(v1.2.0.9028) GitHub actions
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2020-07-08 20:43:25 +02:00 |
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5195e0b9da
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(v1.2.0.9027) move to github
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2020-07-08 17:48:57 +02:00 |
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76fc8e1b14
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(v1.2.0.9026) move to github
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2020-07-08 14:48:06 +02:00 |
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2134fc76e2
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(v1.2.0.9025) AMR calculation speed improvement
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2020-07-03 12:14:41 +02:00 |
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46cf423eab
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(v1.2.0.9024) AMR calculation speed improvement
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2020-07-03 10:51:55 +02:00 |
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152ac5bcad
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(v1.2.0.9023) ab_from_text() improvement
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2020-07-02 21:12:52 +02:00 |
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298e67a45b
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(v1.2.0.9022) as.ab() improvement
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2020-07-01 16:21:36 +02:00 |
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afc660dc33
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(v1.2.0.9021) only progressbar in interactive sessions
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2020-07-01 11:51:26 +02:00 |
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cc6ce0a938
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(v1.2.0.9020) ab_from_text() improvement
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2020-07-01 11:23:05 +02:00 |
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329a0eb0b6
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(v1.2.0.9019) ab_from_text() dose and administration
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2020-07-01 11:07:01 +02:00 |
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240d817b4e
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(v1.2.0.9018) ab_from_text() improvement
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2020-06-26 13:15:46 +02:00 |
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4f6f056077
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(v1.2.0.9017) ab_from_text() improvement
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2020-06-26 12:31:27 +02:00 |
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b31003c0b6
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(v1.2.0.9016) fix in rsi_calc()
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2020-06-26 10:21:22 +02:00 |
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033ca49817
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(v1.2.0.9015) ab_from_text()
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2020-06-25 19:20:50 +02:00 |
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344bbd57f4
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(v1.2.0.9014) ab_from_text()
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2020-06-25 17:34:50 +02:00 |
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8a66e475d7
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(v1.2.0.9013) unit test fix
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2020-06-22 13:18:40 +02:00 |
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779a4e8348
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(v1.2.0.9012) mo_domain(), improved error handling
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2020-06-22 12:18:53 +02:00 |
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93a158aebd
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(v1.2.0.9011) mo_domain(), improved error handling
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2020-06-22 11:18:40 +02:00 |
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e88d7853f5
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(v1.2.0.9010) documentation fix
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2020-06-17 21:35:10 +02:00 |
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f18389d5d6
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(v1.2.0.9009) pkg dependency fix
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2020-06-17 16:29:10 +02:00 |
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ac12392da3
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(v1.2.0.9008) ab_class improvement
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2020-06-17 15:14:37 +02:00 |
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c4d7412f36
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(v1.2.0.9007) Tidyverse selections
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2020-06-17 01:39:30 +02:00 |
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4f94e1312f
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(v1.2.0.9006) improve auto col-determination
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2020-06-11 20:03:13 +02:00 |
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352508889c
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(v1.2.0.9005) data set fix
|
2020-06-09 16:31:44 +02:00 |
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8b692ecfcf
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(v1.2.0.9004) rsi_df() fix for groups
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2020-06-09 16:18:03 +02:00 |
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40221e5244
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(v1.2.0.9003) better terminal colour support
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2020-06-05 13:56:05 +02:00 |
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2c8d600914
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(v1.2.0.9002) fix for joins
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2020-06-03 14:33:55 +02:00 |
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5dc4c96b7d
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(v1.2.0.9001) filter_ab_class() update
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2020-06-03 11:48:00 +02:00 |
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02d07b9fb3
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(v1.2.0.9000) eucast_rules() fix for tibbles
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2020-06-02 16:05:56 +02:00 |
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b44e2c9202
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v1.2.0
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2020-05-28 16:48:55 +02:00 |
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d9a4b0bcaf
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(v1.1.0.9021) 1st isolates update
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2020-05-28 10:51:56 +02:00 |
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86d44054f0
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(v1.1.0.9020) updated taxonomy
|
2020-05-27 16:37:49 +02:00 |
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ae1969b941
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(v1.1.0.9019) mo_source fix
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2020-05-25 01:01:14 +02:00 |
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f5ff2e6634
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(v1.1.0.9018) as.ab() update, added ab_url()
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2020-05-22 20:29:55 +02:00 |
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e467cc103e
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(v1.1.0.9017) as.ab() update, added ab_url()
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2020-05-22 20:15:19 +02:00 |
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1b1e243d14
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(v1.1.0.9016) small fix
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2020-05-21 12:28:57 +02:00 |
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743f9a5364
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(v1.1.0.9015) new default eucast_rules
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2020-05-20 12:00:17 +02:00 |
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5216d2b520
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(v1.1.0.9014) lose dependencies
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2020-05-19 14:16:45 +02:00 |
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cb1814f5ff
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(v1.1.0.9013) lose dependencies
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2020-05-19 13:18:01 +02:00 |
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19703eb5d3
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(v1.1.0.9012) lose dependencies
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2020-05-19 12:08:49 +02:00 |
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218fd08097
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(v1.1.0.9011) lose dependencies
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2020-05-18 13:59:34 +02:00 |
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d659c9baef
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(v1.1.0.9010) lose dependencies
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2020-05-18 11:09:02 +02:00 |
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bf0402a653
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(v1.1.0.9009) lose dependencies
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2020-05-18 10:30:53 +02:00 |
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071bdc5a9e
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(v1.1.0.9008) lose dependencies
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2020-05-17 11:56:12 +02:00 |
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f68d71a5e0
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(v1.1.0.9007) lose dependencies
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2020-05-16 21:40:50 +02:00 |
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29609a0e2c
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(v1.1.0.9006) lose dependencies
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2020-05-16 20:42:45 +02:00 |
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df2456b91f
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(v1.1.0.9005) lose dependencies
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2020-05-16 20:08:21 +02:00 |
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7f3da74b17
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(v1.1.0.9004) lose dependencies
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2020-05-16 13:05:47 +02:00 |
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9fce546901
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(v1.1.0.9003) CI fix
|
2020-05-01 09:14:32 +02:00 |
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77d8f97e0c
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(v1.1.0.9002) CI fix
|
2020-04-30 18:46:29 +02:00 |
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5bdece1f9d
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(v1.1.0.9000) CI fix
|
2020-04-30 09:05:03 +02:00 |
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b040185269
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(v1.1.0.9000) CLSI as.rsi() fix, better vctrs support, new CI
|
2020-04-29 14:33:44 +02:00 |
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e0f4c93e82
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v1.1.0
|
2020-04-17 19:16:30 +02:00 |
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c2ffbd9f95
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(v1.0.1.9009) prepare for next release
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2020-04-15 11:30:28 +02:00 |
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4be54d608c
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(v1.0.1.9008) RIVM abbreviations for drugs
|
2020-04-14 20:38:09 +02:00 |
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cde65141d9
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(v1.0.1.9007) small bugfix
|
2020-04-14 15:10:09 +02:00 |
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7a6f819232
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(v1.0.1.9006) added generic CLSI rules
|
2020-04-14 14:12:31 +02:00 |
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d1cb7d3b6f
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(v1.0.1.9005) as.mo() improvements
|
2020-04-13 21:09:56 +02:00 |
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219cff403f
|
(v1.0.1.9004) Support dplyr 1.0.0
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2020-03-14 14:05:43 +01:00 |
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3760bcb11e
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(v1.0.1.9003) prevent devel from failing
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2020-03-08 15:31:57 +01:00 |
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77656a676c
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(v1.0.1.9002) PCA unit tests
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2020-03-08 11:18:59 +01:00 |
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9fc858f208
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(v1.0.1.9001) PCA unit tests
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2020-03-08 09:12:11 +01:00 |
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fa0d9c58d9
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(v1.0.1.9000) first PCA implementation
|
2020-03-07 21:48:21 +01:00 |
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f444c24ed3
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(v1.0.1) v 1.0.1
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2020-02-23 20:56:11 +01:00 |
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0d5e78b2cf
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(v1.0.0.9007) small doc fix
|
2020-02-22 17:03:47 +01:00 |
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0595af2801
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(v1.0.0.9006) fix WARNING
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2020-02-21 21:26:58 +01:00 |
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ea32e9916a
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(v1.0.0.9005) info printing only in interactive mode
|
2020-02-21 21:13:38 +01:00 |
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47fe8b7820
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(v1.0.0.9004) add example_isolaten_unclean
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2020-02-21 16:05:19 +01:00 |
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bb3728f023
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(v1.0.0.9003) prepare for short update
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2020-02-21 13:13:34 +01:00 |
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6408911922
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(v1.0.0.9002) fix lintr
|
2020-02-20 20:31:42 +01:00 |
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bdb26f624f
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(v1.0.0.9001) add uti to as.rsi()
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2020-02-20 17:21:01 +01:00 |
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c6184a0fb8
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(v0.9.0.9029) add uti to as.rsi()
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2020-02-20 13:19:23 +01:00 |
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a5db82c2fb
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v 1.0.0
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2020-02-20 12:49:55 +01:00 |
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c8981a563e
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(v0.9.0.9027) documentation fix
|
2020-02-17 15:07:25 +01:00 |
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5e2b294351
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(v0.9.0.9026) update documentation
|
2020-02-17 14:38:01 +01:00 |
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11f00f8a0a
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(v0.9.0.9025) update as.rsi documentation
|
2020-02-16 22:43:56 +01:00 |
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c7a93af3d0
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(v0.9.0.9024) global vars fix
|
2020-02-14 20:03:43 +01:00 |
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9b8b02960e
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(v0.9.0.9023) EUCAST 2020 guidelines
|
2020-02-14 19:54:13 +01:00 |
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5a98e6b777
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(v0.9.0.9022) inheritance fix
|
2020-02-10 14:18:15 +01:00 |
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b4356a299c
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(v0.9.0.9021) inheritance fix
|
2020-02-10 12:25:02 +01:00 |
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c7a76ba713
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(v0.9.0.9020) as.mo() improvement
|
2020-02-09 22:04:29 +01:00 |
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4e1c16c5a5
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(v0.9.0.9019) website update
|
2020-02-01 15:09:36 +01:00 |
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f152ab9a48
|
(v0.9.0.9018) Remove mo_history
|
2020-01-31 23:27:38 +01:00 |
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1b80773c22
|
(v0.9.0.9017) documentation fix
|
2020-01-27 19:30:26 +01:00 |
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a13c62e6e8
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(v0.9.0.9016) Support SNOMED codes
|
2020-01-27 19:14:23 +01:00 |
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42b079cdb7
|
(v0.9.0.9015) Fix for as.rsi.disk()
|
2020-01-27 11:37:00 +01:00 |
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9a3891efe4
|
(v0.9.0.9014) Machine reading guidelines
|
2020-01-27 11:05:39 +01:00 |
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423d1d3c41
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(v0.9.0.9013) Support for LOINC codes
|
2020-01-26 20:38:54 +01:00 |
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449d9bde35
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(v0.9.0.9012) Support for LOINC codes
|
2020-01-26 20:20:00 +01:00 |
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19172b1d48
|
(v0.9.0.9011) Support R 4.0
|
2020-01-15 16:40:34 +01:00 |
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895e97c310
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(v0.9.0.9010) Support R 4.0
|
2020-01-15 15:24:08 +01:00 |
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64f5ceef03
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(v0.9.0.9009) antibiotics data set update
|
2020-01-08 11:30:33 +01:00 |
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ced1a7b7fa
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(v0.9.0.9008) Happy new year! Add lifecycles
|
2020-01-05 17:22:09 +01:00 |
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f4669889e5
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(v0.9.0.9007) website update
|
2019-12-27 11:56:54 +01:00 |
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db5dfff0ca
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(v0.9.0.9006) added CITATION file
|
2019-12-22 11:43:38 +01:00 |
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ba3ce77f02
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(v0.9.0.9005) as.mo for G. species
|
2019-12-21 10:56:06 +01:00 |
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cc8cd043e1
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(v0.9.0.9004) website fix
|
2019-12-20 21:06:39 +01:00 |
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2db2a2458a
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(v0.9.0.9003) as.mo() speedup for fullnames
|
2019-12-20 15:05:58 +01:00 |
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f7eb6e4107
|
(v0.9.0.9002) website updates
|
2019-12-16 11:08:25 +01:00 |
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56ce9bf665
|
(v0.9.0) website fixes
|
2019-11-30 12:01:50 +01:00 |
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bb2ed55842
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(v0.9.0) v0.9.0
|
2019-11-29 19:43:23 +01:00 |
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9feef53bde
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(v0.8.0.9037) complete documentation rewrite
|
2019-11-28 23:00:37 +01:00 |
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c5f00f4a9f
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(v0.8.0.9036) complete documentation rewrite
|
2019-11-28 22:32:17 +01:00 |
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7c28b392b1
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(v0.8.0.9035) add more mo codes
|
2019-11-24 22:48:56 +01:00 |
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e53cc4990c
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(v0.8.0.9034) add cid to antivirals
|
2019-11-23 12:39:57 +01:00 |
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267320f15f
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(v0.8.0.9033) antivirals data set, cleanup
|
2019-11-18 12:10:47 +01:00 |
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67f3f4387b
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(v0.8.0.9032) fix regex error
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2019-11-15 16:50:46 +01:00 |
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09e2730b53
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(v0.8.0.9031) as.mo() improvements
|
2019-11-15 15:25:03 +01:00 |
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248b45da71
|
(v0.8.0.9030) depend on tidyr >= 1.0.0
|
2019-11-11 10:46:39 +01:00 |
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d22834c5b8
|
(v0.8.0.9029) cleanup
|
2019-11-10 15:50:18 +01:00 |
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54b6322056
|
(v0.8.0.9028) examples fix
|
2019-11-10 13:17:20 +01:00 |
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59ededa8dc
|
(v0.8.0.9027) adding susceptibility() and resistance()
|
2019-11-10 12:16:56 +01:00 |
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228a4245cb
|
(v0.8.0.9026) appveyor fix
|
2019-11-10 09:26:25 +01:00 |
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a8c48cb2d7
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(v0.8.0.9025) appveyor fix
|
2019-11-10 09:21:43 +01:00 |
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07f945de53
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(v0.8.0.9024) appveyor fix
|
2019-11-10 09:04:18 +01:00 |
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e252f68cdb
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(v0.8.0.9023) appveyor fix
|
2019-11-09 17:13:31 +01:00 |
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32e3a98967
|
(v0.8.0.9022) update vignettes
|
2019-11-09 16:37:41 +01:00 |
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ef640add2d
|
(v0.8.0.9021) update vignettes
|
2019-11-09 11:33:22 +01:00 |
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e2d05cb1b0
|
(v0.8.0.9017) keywords update
|
2019-11-06 14:43:23 +01:00 |
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be9a3e6b12
|
(v0.8.0.9016) unit test update
|
2019-11-05 23:07:05 +01:00 |
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d19c44a25f
|
(v0.8.0.9015) unit test update
|
2019-11-05 22:42:00 +01:00 |
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a1fd2cd98a
|
(v0.8.0.9014) unit test update
|
2019-11-05 22:23:45 +01:00 |
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2560aa1a53
|
(v0.8.0.9013) unit test update
|
2019-11-05 21:52:58 +01:00 |
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5345d2759a
|
(v0.8.0.9012) mdro improvement
|
2019-11-05 11:28:52 +01:00 |
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fe606e287b
|
(v0.8.0.9011) col guess update
|
2019-11-04 12:08:08 +01:00 |
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9060233953
|
(v0.8.0.9010) mdro bug fix
|
2019-11-04 11:35:34 +01:00 |
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0bb531f3e0
|
(v0.8.0.9009) unit test
|
2019-11-03 22:41:29 +01:00 |
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29e448883d
|
(v0.8.0.9008) new verbose mode for MDROs
|
2019-11-03 22:24:42 +01:00 |
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09c4b04cd0
|
(v0.8.0.9007) Enterobacterales order
|
2019-10-30 23:02:50 +01:00 |
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7ff2ad8188
|
(v0.8.0.9006) small typos
|
2019-10-27 00:31:59 +02:00 |
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412077a6f2
|
(v0.8.0.9005) fix unit tests
|
2019-10-26 22:21:26 +02:00 |
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d2e8249edd
|
(v0.8.0.9004) added MDR guideline by Magiorakos et al.
|
2019-10-26 21:56:41 +02:00 |
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c01dc8a5b7
|
(v0.8.0.9003) printing fix for AB columns
|
2019-10-23 15:44:11 +02:00 |
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3e5ab53209
|
(v0.8.0.9002) eucast_rules() fix for S. maltophilia
|
2019-10-23 14:48:25 +02:00 |
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666126cd5e
|
(v0.8.0.9001) guideline text on as.rsi()
|
2019-10-21 14:12:28 +02:00 |
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1b8e2366f7
|
(v0.8.0.9000) website update
|
2019-10-16 22:47:48 +02:00 |
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ca13cc7633
|
v0.8.0
|
2019-10-15 22:19:34 +02:00 |
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10e6b225e7
|
(v0.7.1.9107) v0.8.0
|
2019-10-15 14:35:23 +02:00 |
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2c0f3534bf
|
(v0.7.1.9106) v0.8.0
|
2019-10-13 09:31:58 +02:00 |
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1736fb62d6
|
(v0.7.1.9105) another try
|
2019-10-12 10:08:55 +02:00 |
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2eb4a42f3d
|
(v0.7.1.9104) vignette fix
|
2019-10-12 09:15:27 +02:00 |
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b2a08d056b
|
(v0.7.1.9103) add lintr to CI
|
2019-10-11 19:16:49 +02:00 |
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00cdb498a0
|
(v0.7.1.9102) lintr
|
2019-10-11 17:21:02 +02:00 |
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59af355a89
|
(v0.7.1.9101) NEWS update, fix authors
|
2019-10-09 10:52:19 +02:00 |
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c8f6b97847
|
(v0.7.1.9100) bug_drug speed, MIC levels
|
2019-10-08 22:21:33 +02:00 |
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5dbff3e170
|
(v0.7.1.9098) mdro() unit test fix
|
2019-10-07 15:12:42 +02:00 |
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f479dfce60
|
(v0.7.1.9097) mdro() examples fix
|
2019-10-07 14:57:27 +02:00 |
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4e9c4c1b4e
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(v0.7.1.9096) German guideline for mdro()
|
2019-10-07 14:32:06 +02:00 |
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1e260d85c8
|
(v0.7.1.9095) get_column_abx() fix
|
2019-10-06 22:19:26 +02:00 |
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3d5692219e
|
(v0.7.1.9094) get_column_abx() improvement
|
2019-10-06 21:44:08 +02:00 |
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b6653a620a
|
(v0.7.1.9093) as.ab() fix
|
2019-10-06 21:07:38 +02:00 |
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8bc4081b03
|
(v0.7.1.9092) as.ab() improvements
|
2019-10-04 15:36:12 +02:00 |
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edb599ae0b
|
(v0.7.1.9091) percentage from clean pkg
|
2019-09-30 16:45:36 +02:00 |
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b39e7feae6
|
(v0.7.1.9090) factor levels of mdr_tb
|
2019-09-26 21:58:06 +02:00 |
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b9f01d686e
|
(v0.7.1.9089) eucast file update
|
2019-09-25 22:37:40 +02:00 |
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99d0fe76dd
|
(v0.7.1.9088) bug_drug improvement
|
2019-09-25 15:43:22 +02:00 |
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04cd0d25db
|
(v0.7.1.9087) small fix
|
2019-09-23 23:09:50 +02:00 |
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38336d7408
|
(v0.7.1.9086) small fix
|
2019-09-23 23:00:18 +02:00 |
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ad5f211a8f
|
(v0.7.1.9085) Salmonella fix
|
2019-09-23 21:24:37 +02:00 |
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76dc948067
|
(v0.7.1.9084) CI fix
|
2019-09-23 20:55:54 +02:00 |
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8ce252fbc5
|
(v0.7.1.9083) LIS code improvement
|
2019-09-23 17:32:05 +02:00 |
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a8c6b8f9c4
|
(v0.7.1.9082) CI fix
|
2019-09-23 14:37:24 +02:00 |
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64d9829030
|
(v0.7.1.9081) bug_drug fixes
|
2019-09-23 13:53:50 +02:00 |
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66d405ff57
|
(v0.7.1.9080) new LIS codes
|
2019-09-22 17:19:59 +02:00 |
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57b0bd92a0
|
(v0.7.1.9079) small fixes
|
2019-09-22 12:41:45 +02:00 |
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46b61e9a70
|
(v0.7.1.9078) unit tests
|
2019-09-20 14:50:02 +02:00 |
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40e6b3e8f6
|
(v0.7.1.9077) mo codes fix
|
2019-09-20 14:18:29 +02:00 |
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3596adb295
|
(v0.7.1.9076) mo codes
|
2019-09-20 12:33:05 +02:00 |
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|
e2aa4f996b
|
(v0.7.1.9075) new microorganism codes
|
2019-09-18 15:46:09 +02:00 |
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f553a08a7b
|
(v0.7.1.9074) CI updates
|
2019-09-16 12:00:56 +02:00 |
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398c5bdc4f
|
(v0.7.1.9073) as.mo() self-learning algorithm
|
2019-09-15 22:57:30 +02:00 |
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cd178ee569
|
(v0.7.1.9072) key_antibiotics() for foreign systems
|
2019-09-12 15:08:53 +02:00 |
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b5d2a08401
|
(v0.7.1.9071) p_symbol()
|
2019-09-03 09:47:39 +02:00 |
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06b6266366
|
(v0.7.1.9070) na.rm for age(), age_groups()
|
2019-09-02 15:17:41 +02:00 |
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c7be72f0ce
|
(v0.7.1.9069) documentation update
|
2019-09-01 13:16:57 +02:00 |
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88ee1b7268
|
(v0.7.1.9068) gramstain to freq()
|
2019-08-30 14:50:56 +02:00 |
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34a82d091e
|
(v0.7.1.9067) honor info
|
2019-08-28 17:12:48 +02:00 |
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e2b78fa428
|
(v0.7.1.9066) bug-drug fix
|
2019-08-27 23:00:00 +02:00 |
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248638ad91
|
(v0.7.1.9065) bug-drug fix
|
2019-08-27 22:41:09 +02:00 |
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f3276592b7
|
(v0.7.1.9064) bug-drug fix
|
2019-08-27 19:15:04 +02:00 |
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|
93be16484b
|
(v0.7.1.9063) septic_patients -> example_isolates
|
2019-08-27 16:45:42 +02:00 |
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|
7a6fce4eb8
|
(v0.7.1.9062) mo/ab assignment improvements
|
2019-08-26 16:02:03 +02:00 |
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|
13d4fef801
|
(v0.7.1.9061) mo_property improvement
|
2019-08-26 10:03:37 +02:00 |
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05dcb43660
|
(v0.7.1.9060) globals
|
2019-08-25 23:25:12 +02:00 |
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e46cb0399f
|
(v0.7.1.9059) bug_drug_combinations
|
2019-08-25 22:53:22 +02:00 |
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7c069145ac
|
(v0.7.1.9058) as.mo() improvement
|
2019-08-20 11:40:54 +02:00 |
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|
04d49a62af
|
(v0.7.1.9057) get_column_abx() improvement
|
2019-08-15 17:09:27 +02:00 |
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920212e815
|
(v0.7.1.9056) mo and ab subsetting
|
2019-08-14 14:57:06 +02:00 |
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7108454ba5
|
(v0.7.1.9055) algorithm improvements
|
2019-08-13 16:15:08 +02:00 |
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|
5f2733349e
|
(v0.7.1.9038) mo algorithm inprovements
|
2019-08-12 19:07:15 +02:00 |
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c44c5e3913
|
(v0.7.1.9037) CI and global env fix
|
2019-08-12 15:34:49 +02:00 |
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bd252a2984
|
(v0.7.1.9036) preserve ab/mo classes in subsetting
|
2019-08-12 14:48:09 +02:00 |
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1d423cca89
|
(v0.7.1.9035) cephalosporins and unit tests
|
2019-08-11 19:07:26 +02:00 |
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|
3f5828e74a
|
(v0.7.1.9034) mo.codes fix for Dracunculus spp.
|
2019-08-09 23:45:26 +02:00 |
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|
6598c5615d
|
(v0.7.1.9033) 5000 new fungi
|
2019-08-09 23:22:10 +02:00 |
|
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|
6a349bf757
|
(v0.7.1.9032) eucast_rules() improvements
|
2019-08-09 14:28:46 +02:00 |
|
|
|
1ce4b72dd2
|
(v0.7.1.9031) include_unknown for first_isolate()
|
2019-08-08 22:39:42 +02:00 |
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|
22a206ffd8
|
(v0.7.1.9030) eucast_rules() fix
|
2019-08-08 15:52:07 +02:00 |
|
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f67c739892
|
(v0.7.1.9029) unit test
|
2019-08-07 18:56:14 +02:00 |
|
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bfa92eb166
|
(v0.7.1.9028) predict update
|
2019-08-07 15:58:32 +02:00 |
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90c874025a
|
(v0.7.1.9027) tibble printing
|
2019-08-07 15:37:39 +02:00 |
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|
14c47da656
|
(v0.7.1.9026) NAMESPACE fix
|
2019-08-06 15:57:51 +02:00 |
|
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|
3a1f960f89
|
(v0.7.1.9024) eucast_rules() fix, new MOs
|
2019-08-06 14:39:22 +02:00 |
|
|
|
85b62aaf8f
|
(v0.7.1.9023) wrong percentage in as.mo()
|
2019-08-04 17:41:12 +02:00 |
|
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|
643c5ed807
|
(v0.7.1.9022) CI fix for codecov
|
2019-08-04 11:33:56 +02:00 |
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d6ab3896a1
|
(v0.7.1.9021) CI fix for resistance_predict
|
2019-08-04 10:48:41 +02:00 |
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4f3ef53c78
|
(v0.7.1.9020) CI fix 2
|
2019-08-03 21:51:08 +02:00 |
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|
a6606d334c
|
(v0.7.1.9019) CI fix
|
2019-07-30 19:20:13 +02:00 |
|
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|
2a62c3d62a
|
(v0.7.1.9018) deps
|
2019-07-30 13:12:40 +02:00 |
|
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|
ec0ca20dee
|
(v0.7.1.9017) deps
|
2019-07-29 21:20:26 +02:00 |
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|
b7e2d7b9b8
|
(v0.7.1.9016) deps
|
2019-07-29 17:34:57 +02:00 |
|
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|
240f03a672
|
(v0.7.1.9015) Remove freq()
|
2019-07-29 13:33:48 +02:00 |
|
|
|
9ac5a34b36
|
(v0.7.1.9014) MO codes update
|
2019-07-16 16:14:11 +02:00 |
|
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|
c652c6913f
|
(v0.7.1.9013) guess_mo_ab speed improvement
|
2019-07-11 13:39:18 +02:00 |
|
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|
68230d0712
|
(v0.7.1.90012) mo_shortname fix
|
2019-07-10 21:36:51 +02:00 |
|
|
|
b452de2fe4
|
(v0.7.1.9010) eucast informative text in verbose mode
|
2019-07-09 13:36:03 +02:00 |
|
|
|
b15d59cf03
|
(v0.7.1.9009) note for WHOCC
|
2019-07-09 11:22:46 +02:00 |
|
|
|
d9e257f8db
|
(v0.7.1.9008) ab update
|
2019-07-04 19:08:18 +02:00 |
|
|
|
c57ad26c5b
|
(v0.7.1.9007) mdro update
|
2019-07-04 15:26:07 +02:00 |
|
|
|
4ff20af123
|
(v0.7.1.9006) new rsi calculations, atc class removal
|
2019-07-02 16:48:52 +02:00 |
|
|
|
156d550895
|
(v0.7.1.9005) new rsi calculations, atc class removal
|
2019-07-01 14:03:15 +02:00 |
|
|
|
65c6702b21
|
(v0.7.1.9004) atc class removal
|
2019-06-27 11:57:45 +02:00 |
|
|
|
6013fbefae
|
(v0.7.1.9003) website update
|
2019-06-23 21:35:17 +02:00 |
|
|
|
f2d7a19118
|
(v0.7.1.9002) website update
|
2019-06-23 17:44:36 +02:00 |
|
|
|
78ec32b990
|
v0.7.1
|
2019-06-23 17:41:31 +02:00 |
|
|
|
278244140c
|
(v0.7.0.9015) vignette fix
|
2019-06-22 21:33:13 +02:00 |
|
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|
b94638d53e
|
(v0.7.0.9014) unit tests
|
2019-06-22 20:14:06 +02:00 |
|
|
|
c9156c004a
|
(v0.7.0.9013) mo_synonym fix
|
2019-06-22 14:49:12 +02:00 |
|
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|
409397a337
|
(v0.7.0.9012) unit test
|
2019-06-18 19:28:26 +02:00 |
|
|
|
9c39c35f86
|
(v0.7.0.9010) mo_synonyms, plot/barplot fixes
|
2019-06-16 21:42:40 +02:00 |
|
|
|
980be2b22d
|
(v0.7.0.9009) global note
|
2019-06-13 16:40:35 +02:00 |
|
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|
254745061c
|
(v0.7.0.9008) T. vaginalis, rsi_df
|
2019-06-13 14:28:46 +02:00 |
|
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|
699e87ab4a
|
(v0.7.0.9007) renamed notes fix
|
2019-06-12 16:08:20 +02:00 |
|
|
|
44ab53128e
|
(v0.7.0.9006) ab algorithm fix for ATC codes
|
2019-06-11 15:31:32 +02:00 |
|
|
|
8f674e19bb
|
(v0.7.0.9005) ab algorithm update
|
2019-06-11 14:18:25 +02:00 |
|
|
|
f6c47c8c88
|
(v0.7.0.9004) pkgdown update
|
2019-06-09 08:57:54 +02:00 |
|
|
|
ec48f1d83b
|
(v0.7.0.9003) scale fix
|
2019-06-08 23:50:06 +02:00 |
|
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|
f50d3a5ba1
|
(v0.7.0.9002) scale fix
|
2019-06-08 15:00:28 +02:00 |
|
|
|
f02679fb63
|
(v0.7.0.9001) new pathovars, small fixes
|
2019-06-07 22:47:37 +02:00 |
|
|
|
04c75e8e36
|
(v0.7.0.9000) new dev version
|
2019-06-03 20:52:24 +02:00 |
|
|
|
270aa0dd33
|
v0.7.0
|
2019-06-03 17:45:22 +02:00 |
|
|
|
bd73988f15
|
(v0.6.1.9053) prerelease fixes
|
2019-06-02 19:23:19 +02:00 |
|
|
|
8de0495008
|
(v0.6.1.9052) website update
|
2019-06-01 21:28:18 +02:00 |
|
|
|
5608b27c7c
|
(v0.6.1.9051) support staged install
|
2019-06-01 20:54:56 +02:00 |
|
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|
2667fff8a7
|
(v0.6.1.9050) support staged install
|
2019-06-01 20:40:49 +02:00 |
|
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|
a665612cb8
|
(v0.6.1.9049) data creation fix
|
2019-05-31 21:20:16 +02:00 |
|
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|
4bac768557
|
(v0.6.1.9048) data creation fox
|
2019-05-31 21:01:14 +02:00 |
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|
0a6580b4eb
|
(v0.6.1.9047) ggplot fix
|
2019-05-31 20:48:22 +02:00 |
|
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|
4ed27c7e7a
|
(v0.6.1.9046) ggplot fix
|
2019-05-31 20:25:57 +02:00 |
|
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|
f03f71eced
|
(v0.6.1.9045) age test fix
|
2019-05-31 14:40:15 +02:00 |
|
|
|
493ae2ba0c
|
(v0.6.1.9044) first_isolate fix for species
|
2019-05-31 14:25:11 +02:00 |
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|
|
1f8ee3ec3e
|
(v0.6.1.9043) age doc fix
|
2019-05-30 08:51:38 +02:00 |
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|
|
8b5e2b030b
|
added boxplot for (grouped) freq()
|
2019-05-29 19:56:17 +02:00 |
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|
|
27380fa021
|
fixes for microorganisms.codes
|
2019-05-28 16:50:40 +02:00 |
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|
|
3688fcaabf
|
doc fix
|
2019-05-23 17:59:43 +02:00 |
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|
bbf8b611e3
|
doc fix
|
2019-05-23 17:35:58 +02:00 |
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|
|
60983a1640
|
added mdr_tb()
|
2019-05-23 16:58:59 +02:00 |
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|
|
07d26cd485
|
faster determination of abx
|
2019-05-20 19:12:41 +02:00 |
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|
6eb08a2ea3
|
new git flow to repository
|
2019-05-20 14:16:53 +02:00 |
|
|
|
4ca00e1868
|
speed improvement eucast_rules(), support more old MO codes
|
2019-05-20 12:00:18 +02:00 |
|
|
|
c3ae6b7699
|
freq fix
|
2019-05-17 09:09:18 +02:00 |
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|
|
4c3cf85a65
|
ab_info, other bug fixes
|
2019-05-16 21:20:00 +02:00 |
|
|
|
38a4421450
|
CI tests
|
2019-05-13 10:10:16 +02:00 |
|
|
|
fcc77164e9
|
mdro fix
|
2019-05-11 23:30:10 +02:00 |
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|
|
68cc7ef0d0
|
new antibiotics
|
2019-05-10 16:44:59 +02:00 |
|
|
|
73f1ee1159
|
freq/age fix
|
2019-04-11 00:54:48 +02:00 |
|
|
|
cffb7787d8
|
cfta streptococci
|
2019-04-09 10:34:40 +02:00 |
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|
|
9e20ade0a7
|
ci update
|
2019-04-06 20:03:46 +02:00 |
|
|
|
c6bf982ba6
|
ci update
|
2019-04-06 16:50:59 +02:00 |
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|
|
0ff299394a
|
an another go
|
2019-04-06 16:23:43 +02:00 |
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|
|
501f5db020
|
prevent staged install
|
2019-04-06 11:09:06 +02:00 |
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|
|
fbc9191b13
|
new EUCAST rules algorithm
|
2019-04-05 18:47:39 +02:00 |
|
|
|
248e508e9b
|
CI - test also on r-devel
|
2019-03-29 14:34:39 +01:00 |
|
|
|
b25f2d6213
|
v0.6.1
|
2019-03-28 21:33:28 +01:00 |
|
|
|
429814c29b
|
v0.6.0
|
2019-03-27 11:22:36 +01:00 |
|
|
|
29f444543d
|
added Becker 2019
|
2019-03-26 14:24:03 +01:00 |
|
|
|
c6a12266e7
|
DSMZ data
|
2019-03-18 14:29:41 +01:00 |
|
|
|
fdffc2791b
|
memory for as.mo()
|
2019-03-15 13:57:25 +01:00 |
|
|
|
504a042fba
|
uncertainty levels, new WHONET codes
|
2019-03-12 12:19:27 +01:00 |
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|
|
b319b89750
|
WHONET fix
|
2019-03-09 08:21:00 +01:00 |
|
|
|
5c7a061a5d
|
filter_ab_class fix
|
2019-03-06 09:32:48 +01:00 |
|
|
|
74e0ae21fd
|
con WHONET, filter ab class
|
2019-03-05 22:47:42 +01:00 |
|
|
|
e835525cf6
|
unknown codes, rsi fix
|
2019-03-02 22:47:04 +01:00 |
|
|
|
c5efb272fd
|
mo_source improvement
|
2019-03-01 09:34:04 +01:00 |
|
|
|
2565b60024
|
rlang dependency, new fungi
|
2019-02-28 13:56:28 +01:00 |
|
|
|
54162522bd
|
age_groups fix
|
2019-02-27 11:36:12 +01:00 |
|
|
|
f9ded23023
|
as.mo improvement
|
2019-02-26 12:33:26 +01:00 |
|
|
|
0ec76cfa98
|
as.mo improvement
|
2019-02-25 10:42:57 +01:00 |
|
|
|
1a6314769b
|
as.mo improvement
|
2019-02-23 16:02:31 +01:00 |
|
|
|
41ad7a22c8
|
mo_rank mo_url, added Tremellales
|
2019-02-22 22:12:10 +01:00 |
|
|
|
68a9a35ed6
|
algorithm update
|
2019-02-21 18:55:52 +01:00 |
|
|
|
13120f465f
|
website update
|
2019-02-20 13:57:23 +01:00 |
|
|
|
fb1fc3686c
|
Catalogue of life
|
2019-02-20 00:04:48 +01:00 |
|
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|
54f8258f8c
|
Catalogue of Life, replaces ITIS
|
2019-02-18 02:33:37 +01:00 |
|
|
|
9209787a53
|
SPSS tutorial
|
2019-02-14 15:18:17 +01:00 |
|
|
|
efb2af9e3a
|
benchmarks plots
|
2019-02-14 10:23:51 +01:00 |
|
|
|
ae44b185e6
|
fix freq length calculation
|
2019-02-13 17:14:59 +01:00 |
|
|
|
30ff770c93
|
freq update
|
2019-02-12 15:38:31 +01:00 |
|
|
|
76ed26d27e
|
resistance predict update
|
2019-02-11 10:27:10 +01:00 |
|
|
|
70105086c8
|
as.rsi warning, site update
|
2019-02-10 08:42:28 +01:00 |
|
|
|
c56b179857
|
as.rsi warning, site update
|
2019-02-09 22:16:24 +01:00 |
|
|
|
ed30312048
|
mo codes for WHONET
|
2019-02-08 16:06:54 +01:00 |
|
|
|
587e00b7be
|
is.rsi.eligible update
|
2019-02-04 12:24:07 +01:00 |
|
|
|
cd07d65734
|
freq and website update
|
2019-02-01 16:55:55 +01:00 |
|
|
|
0b3dc0231f
|
freq fix
|
2019-01-30 16:00:55 +01:00 |
|
|
|
3efb54d016
|
freq update
|
2019-01-29 20:20:09 +01:00 |
|
|
|
6aae206320
|
WHONET/EARS-Net support
|
2019-01-29 00:06:50 +01:00 |
|
|
|
f6336fdd89
|
quasiquotation for freq()
|
2019-01-28 11:20:32 +01:00 |
|
|
|
e76961a66b
|
less deps
|
2019-01-27 19:30:40 +01:00 |
|
|
|
b39055c018
|
deprecated fix
|
2019-01-27 00:33:58 +01:00 |
|
|
|
f836722269
|
atc_ functions
|
2019-01-26 23:22:56 +01:00 |
|
|
|
f4ff98b470
|
WHO update, antibiotics update
|
2019-01-25 13:18:41 +01:00 |
|
|
|
46dcc7e2e8
|
set_mo_source
|
2019-01-21 15:53:01 +01:00 |
|
|
|
c6c3088e9f
|
select() fix for freq
|
2019-01-17 12:08:04 +01:00 |
|
|
|
046d195064
|
resistance predict
|
2019-01-15 12:45:24 +01:00 |
|
|
|
5aad26035c
|
edited g.test
|
2019-01-12 11:06:58 +01:00 |
|
|
|
641d866db2
|
guess_ab_col, benchmarks
|
2019-01-11 20:37:23 +01:00 |
|
|
|
193a2d2863
|
EUCAST update, as.mo bugfix for empty vlaues
|
2019-01-08 16:23:45 +01:00 |
|
|
|
bc15f660d6
|
guess_ab()
|
2019-01-06 20:23:49 +01:00 |
|
|
|
0205b6178d
|
guess_mo deprecation
|
2019-01-06 16:40:55 +01:00 |
|
|
|
f01d62ee5d
|
language
|
2019-01-05 21:51:48 +01:00 |
|
|
|
6b2d464f8c
|
big website update, licence txt update
|
2019-01-02 23:24:07 +01:00 |
|
|
|
2e4d703338
|
eucast rules fix, 1st isolate fix, website update
|
2018-12-31 01:48:53 +01:00 |
|
|
|
469b145d8c
|
bye bye packrat
|
2018-12-30 12:00:53 +01:00 |
|
|
|
92a32b62a7
|
new website, freq updates
|
2018-12-29 22:24:19 +01:00 |
|
|
|
92d2553dfe
|
gitlab pages
|
2018-12-23 21:26:21 +01:00 |
|
|
|
0b8084871d
|
dplyr 0.8.0 support, fixes #7
|
2018-12-22 22:39:34 +01:00 |
|
|
|
2018d5b477
|
age and age_groups
|
2018-12-15 22:40:07 +01:00 |
|
|
|
81af7be36e
|
note about portions
|
2018-12-14 07:23:25 +01:00 |
|
|
|
9478ab71be
|
freq - decimals
|
2018-12-10 10:13:40 +01:00 |
|
|
|
8e8a9cd190
|
AI improvements
|
2018-12-07 12:04:55 +01:00 |
|
|
|
60fe98bbbd
|
better as.mo handling
|
2018-12-06 14:36:39 +01:00 |
|
|
|
5cfa5bbfe3
|
v0.5.0
|
2018-11-30 16:16:04 +01:00 |
|
|
|
31e977937d
|
fix for as.mo and freq
|
2018-11-30 12:05:59 +01:00 |
|
|
|
9ddf6dc530
|
support A. species for as.mo, cleanup
|
2018-11-24 20:25:09 +01:00 |
|
|
|
a8132922af
|
unit test read.4d, unselecting freq cols
|
2018-11-19 13:00:22 +01:00 |
|
|
|
4fcc2b409a
|
MDRO update
|
2018-11-16 20:50:50 +01:00 |
|
|
|
fab64e6728
|
read.4D improvements
|
2018-11-15 12:42:35 +01:00 |
|
|
|
6b0f4ffbd4
|
new kingdom
|
2018-11-09 13:11:54 +01:00 |
|
|
|
d07e9b904e
|
new function get_locale
|
2018-11-05 13:20:32 +01:00 |
|
|
|
5476fecc73
|
eucast update
|
2018-11-01 20:23:33 +01:00 |
|
|
|
9cd4ab928a
|
speed improvement as.mo, freq title
|
2018-10-31 12:10:49 +01:00 |
|
|
|
1bf8dc2983
|
as.mo speedup: assigned to namespace
|
2018-10-29 17:26:17 +01:00 |
|
|
|
87757748bd
|
switch to gitlab
|
2018-10-23 16:49:40 +02:00 |
|
|
|
299c5bea43
|
na freq, removed factors
|
2018-10-23 09:42:26 +02:00 |
|
|
|
c2a93b46db
|
breaks param, tidyr dep change, freq markdown
|
2018-10-22 12:32:59 +02:00 |
|
|
|
86b03577a7
|
fix for as.mo, added also_single_tested
|
2018-10-19 13:53:31 +02:00 |
|
|
|
693f64bdbf
|
new EUCAST rules: clinical breakpoints
|
2018-10-17 17:32:34 +02:00 |
|
|
|
d5a41de711
|
parameter combine_IR
|
2018-10-16 09:59:31 +02:00 |
|
|
|
5b5b95a47b
|
count_all and some fixes
|
2018-10-12 16:35:18 +02:00 |
|
|
|
95c9fdc552
|
CRAN fixes for release 0.4.0
https://cran.r-project.org/web/checks/check_results_AMR.html
|
2018-10-09 13:53:33 +02:00 |
|
|
|
c7c57f4042
|
0.4.0, just published on CRAN
|
2018-10-01 19:36:42 +02:00 |
|
|
|
3119a221e5
|
authors from ITIS, diff for freq
|
2018-10-01 11:39:43 +02:00 |
|
|
|
768fe17324
|
removed clipboard functions as it violated CRAN policies
|
2018-09-28 16:05:18 +02:00 |
|
|
|
2b0080995e
|
speed improvement for as.mo, more old taxonomic names
|
2018-09-27 23:23:48 +02:00 |
|
|
|
9c566585b0
|
first inclusion of ITIS data
|
2018-09-24 23:33:29 +02:00 |
|
|
|
db14781593
|
add labels_rsi_count
|
2018-09-16 22:11:17 +02:00 |
|
|
|
26f5be0033
|
support for portuguese, language determination based on system
|
2018-09-08 16:06:47 +02:00 |
|
|
|
b388e3fee7
|
Support for German and Spanish microorganism properties, cleanup
|
2018-09-04 11:33:30 +02:00 |
|
|
|
75fe4d401f
|
new MOs, cleanup
|
2018-09-01 21:19:46 +02:00 |
|
|
|
5965d3c794
|
replaced bactid by mo
|
2018-08-31 13:36:19 +02:00 |
|
|
|
029157b3be
|
163 new trade names, added ab_tradenames
|
2018-08-29 12:27:37 +02:00 |
|
|
|
972fc4f6c7
|
ab_* functions, mo_* functions, 180 new microorganisms, speed improvement for bactid
|
2018-08-28 13:51:13 +02:00 |
|
|
|
2acdb1981c
|
atc and bactid functions, readme update
|
2018-08-25 22:01:14 +02:00 |
|
|
|
a100d07da6
|
removed ratio, better rsi_calc, update for freq
|
2018-08-24 11:08:20 +02:00 |
|
|
|
0c0e538ef4
|
dependencies
|
2018-08-23 22:05:17 +02:00 |
|
