Dr. Matthijs Berends
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f065945d7b
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Update clinical breakpoints and fix some `as.mo()` bugs (#117)
* Updates clinical breakpoints EUCAST/CLSI 2023, fixes #102, fixes #112, fixes #113, fixes #114, fixes #115
* docs
* implement ecoffs
* unit tests
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2023-06-22 15:10:59 +02:00 |
 dr. M.S. (Matthijs) Berends
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9591688811
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documentation update
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2023-05-27 10:39:22 +02:00 |
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dr. M.S. (Matthijs) Berends
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c28cfa3a77
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fix documentation
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2023-03-16 08:55:37 +01:00 |
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dr. M.S. (Matthijs) Berends
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80cfc503c2
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check for 2.0
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2023-03-12 13:02:37 +01:00 |
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dr. M.S. (Matthijs) Berends
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049baf0a71
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fix for antibiograms on R < 3.5
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2023-02-24 09:43:10 +01:00 |
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dr. M.S. (Matthijs) Berends
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e70f2cd32c
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knitr format
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2023-02-23 16:27:40 +01:00 |
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dr. M.S. (Matthijs) Berends
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8d902410f9
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unit tests
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2023-02-18 14:56:06 +01:00 |
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dr. M.S. (Matthijs) Berends
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bc434db835
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bring back `antibiogram()`, without deps
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2023-02-10 16:18:00 +01:00 |
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dr. M.S. (Matthijs) Berends
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1a0dc4bf46
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revert back to pre-antibiogram
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2023-02-09 13:07:39 +01:00 |
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dr. M.S. (Matthijs) Berends
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9e99e66f01
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use dplyr where available, new `antibiogram()` for WISCA, fixed Salmonella Typhi/Paratyphi
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2023-02-06 11:57:22 +01:00 |
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dr. M.S. (Matthijs) Berends
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19fd0ef121
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sort sir history
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2023-01-23 15:01:21 +01:00 |
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Dr. Matthijs Berends
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98e62c9af2
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Replace RSI with SIR
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2023-01-21 23:47:20 +01:00 |
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dr. M.S. (Matthijs) Berends
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b94bc6c67b
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adding mo fixes
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2023-01-14 19:50:25 +01:00 |
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dr. M.S. (Matthijs) Berends
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1db74e86cd
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good start-up practice
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2022-12-29 16:23:57 +01:00 |
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dr. M.S. (Matthijs) Berends
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f619fb683b
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support new mo codes
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2022-12-27 15:16:15 +01:00 |
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dr. M.S. (Matthijs) Berends
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23fe427cbc
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Fixes for Salmonella
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2022-12-17 14:31:33 +01:00 |
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dr. M.S. (Matthijs) Berends
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8da2467209
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updated taxonomy
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2022-12-12 00:14:56 +01:00 |
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dr. M.S. (Matthijs) Berends
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e7d7b94b3e
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no obligatory note on startup
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2022-12-09 15:10:49 +01:00 |
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dr. M.S. (Matthijs) Berends
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31fb81c382
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revised `as.rsi()`, fix for `mdro()`
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2022-11-24 20:29:00 +01:00 |
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Dr. Matthijs Berends
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496c08d851
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Implement extensive support for antiviral agents support (#77)
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2022-11-13 08:46:10 +01:00 |
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dr. M.S. (Matthijs) Berends
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796b972f8a
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extend vctrs support
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2022-10-31 11:19:06 +01:00 |
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dr. M.S. (Matthijs) Berends
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9444ed6d1d
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fix antibiotics error
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2022-10-30 21:05:46 +01:00 |
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dr. M.S. (Matthijs) Berends
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d40e0ef20b
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completely updated `antibiotics`
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2022-10-30 14:31:45 +01:00 |
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dr. M.S. (Matthijs) Berends
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c2801ba7a1
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new rsi_translation
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2022-10-22 22:00:15 +02:00 |
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dr. M.S. (Matthijs) Berends
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76bcd3528c
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move object assignment to AMR_env
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2022-10-14 13:02:50 +02:00 |
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dr. M.S. (Matthijs) Berends
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33227a5d90
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support ab selectors for manual AB codes
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2022-10-11 10:49:55 +02:00 |
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dr. M.S. (Matthijs) Berends
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4fe90092c7
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fix for `NA` in `as.ab()`
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2022-10-10 15:44:59 +02:00 |
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Dr. Matthijs Berends
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cd2acc4a29
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New mo algorithm, prepare for 2.0
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2022-10-05 09:12:22 +02:00 |
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dr. M.S. (Matthijs) Berends
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63fe160322
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new rsi_interpretation_history
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2022-09-01 15:20:57 +02:00 |
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dr. M.S. (Matthijs) Berends
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3fca703fbf
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new AMR distance function
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2022-08-30 21:48:02 +02:00 |
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dr. M.S. (Matthijs) Berends
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4d050aef7c
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styled, unit test fix
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2022-08-28 10:31:50 +02:00 |
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dr. M.S. (Matthijs) Berends
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303d61b473
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new tibble export
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2022-08-27 20:49:37 +02:00 |
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dr. M.S. (Matthijs) Berends
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3864ab2fb8
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Feather and Parquet files
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2022-08-26 22:25:15 +02:00 |
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dr. M.S. (Matthijs) Berends
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952d16de33
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new, automated website
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2022-08-21 16:37:20 +02:00 |
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dr. M.S. (Matthijs) Berends
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7f981e7778
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(v1.8.1.9013) add Toxoplasma
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2022-06-10 13:15:23 +02:00 |
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dr. M.S. (Matthijs) Berends
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1b0983e382
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(v1.8.1) prerelease 1.8.1
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2022-03-14 16:36:10 +01:00 |
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dr. M.S. (Matthijs) Berends
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18e8525d10
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(v1.8.0.9001) as.mo improvement, fixes #52
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2022-02-26 21:58:23 +01:00 |
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dr. M.S. (Matthijs) Berends
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25cef46c59
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(v1.8.0) prerelease 1.8.0
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2021-12-23 18:56:28 +01:00 |
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dr. M.S. (Matthijs) Berends
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75dac113b6
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(v1.7.1.9077) skimr support only for newer R versions
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2021-12-23 13:38:25 +01:00 |
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dr. M.S. (Matthijs) Berends
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bd4bb1d72f
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(v1.7.1.9073) as.rsi() fix for UTIs
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2021-12-14 21:47:14 +01:00 |
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dr. M.S. (Matthijs) Berends
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9a2c431e16
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(v1.7.1.9053) fortify() methods
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2021-11-01 13:51:13 +01:00 |
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dr. M.S. (Matthijs) Berends
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a2d249962f
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(v1.7.1.9023) Removed filter_ functions, new set_ab_names(), ATC code update, ab selector update, fixes #46 and fixed #47
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2021-08-16 21:54:34 +02:00 |
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dr. M.S. (Matthijs) Berends
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4e1efd902c
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(v1.7.1.9022) rely on vctrs for ab selectors
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2021-07-23 21:42:11 +02:00 |
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dr. M.S. (Matthijs) Berends
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6838f03bde
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(v1.7.1.9020) autoplot generics
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2021-07-12 20:24:49 +02:00 |
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dr. M.S. (Matthijs) Berends
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b228eb1536
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(v1.7.1.9016) only_treatable ab selectors
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2021-07-08 22:23:28 +02:00 |
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dr. M.S. (Matthijs) Berends
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625a6fb304
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(v1.7.1.9015) removed S3 taxonomic_name again
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2021-07-07 20:34:05 +02:00 |
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dr. M.S. (Matthijs) Berends
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3bd50710e8
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(v1.7.1.9010) fix for count_* and proportion_*
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2021-07-04 12:00:41 +02:00 |
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dr. M.S. (Matthijs) Berends
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99be4c7e7e
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(v1.7.1.9002) ab class selectors update
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2021-06-14 22:04:04 +02:00 |
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dr. M.S. (Matthijs) Berends
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f406319503
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(v1.7.0.9000) package size
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2021-05-30 22:14:38 +02:00 |
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dr. M.S. (Matthijs) Berends
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aeea00881e
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(v1.6.0.9023) new unit test flow
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2021-05-13 19:31:47 +02:00 |