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Commit Graph

172 Commits

Author SHA1 Message Date
ade9f8bafd (v1.4.0.9004) bugfix 2020-10-21 11:50:43 +02:00
4e9ccb4435 (v1.4.0.9001) is_gram_positive(), is_gram_negative(), parameter hardening 2020-10-19 17:09:19 +02:00
833a1be36d (v1.4.0.9000) more extensive unit tests 2020-10-15 09:46:41 +02:00
28e77680c5 (v1.4.0) matching score update 2020-10-08 11:16:03 +02:00
baf510183c (v1.3.0.9038) prefinal 1.4.0 2020-10-04 19:26:43 +02:00
ac1c78c793 (v1.3.0.9036) documentation fix 2020-09-30 10:24:53 +02:00
4e0374af29 (v1.3.0.9035) mdro() for EUCAST 3.2, examples cleanup 2020-09-29 23:35:46 +02:00
519aada54f (v1.3.0.9032) support skimr 2020-09-28 01:08:55 +02:00
9667c2994f (v1.3.0.9029) eucast rules fix, unique() 2020-09-25 14:44:50 +02:00
1d982a82b4 (v1.3.0.9028) eucast fix 2020-09-24 12:38:13 +02:00
c19095a3d5 (v1.3.0.9026) eucast expert rules 3.2 2020-09-24 00:30:11 +02:00
3ff871afeb (v1.3.0.9016) mo_uncertainties() overhaul 2020-09-12 08:49:01 +02:00
68e9cb78e9 (v1.3.0.9015) as.mo() speedup for valid taxonomic names 2020-09-03 20:59:21 +02:00
c4b87fe241 (v1.3.0.9014) as.mo() speed improvement 2020-09-03 12:31:48 +02:00
5e45fdcf2a (v1.3.0.9007) tibble printing 2020-08-26 11:33:54 +02:00
c8c8bb4e3a (v1.3.0.9006) website update 2020-08-21 11:40:13 +02:00
818d0441e0 (v1.3.0.9005) website update 2020-08-17 21:49:58 +02:00
dab017a50f (v1.3.0.9004) data sets, as.disk() improvement 2020-08-16 21:38:42 +02:00
08d62bb5d5 (v1.3.0.9002) intrinsic_resistant data set 2020-08-14 13:36:10 +02:00
7d16bec21f (v1.3.0.9001) website update 2020-08-10 12:46:03 +02:00
0d9602a6a9 (v1.3.0.9000) support across() in as.rsi() 2020-08-10 11:44:58 +02:00
ea4e5e5b81 (v1.3.0) v1.3.0 2020-07-29 13:48:50 +02:00
de0f7b8950 (v1.2.0.9040) conserve_capped_values for as.rsi() 2020-07-29 12:47:58 +02:00
e7def0aa4c (v1.2.0.9039) conserve_capped_values for as.rsi() 2020-07-29 11:46:59 +02:00
453f7f210b (v1.2.0.9038) CLSI 2019 fix 2020-07-29 10:33:47 +02:00
1b65d76cfb (v1.2.0.9037) survey on website 2020-07-28 18:39:57 +02:00
1d66b5c43c (v1.2.0.9032) Permanently move to GitHub 2020-07-09 20:07:39 +02:00
7baa9d3658 (v1.2.0.9030) GitHub Actions 2020-07-09 14:12:11 +02:00
76fc8e1b14 (v1.2.0.9026) move to github 2020-07-08 14:48:06 +02:00
344bbd57f4 (v1.2.0.9014) ab_from_text() 2020-06-25 17:34:50 +02:00
8a66e475d7 (v1.2.0.9013) unit test fix 2020-06-22 13:18:40 +02:00
b44e2c9202 v1.2.0 2020-05-28 16:48:55 +02:00
86d44054f0 (v1.1.0.9020) updated taxonomy 2020-05-27 16:37:49 +02:00
ae1969b941 (v1.1.0.9019) mo_source fix 2020-05-25 01:01:14 +02:00
e467cc103e (v1.1.0.9017) as.ab() update, added ab_url() 2020-05-22 20:15:19 +02:00
743f9a5364 (v1.1.0.9015) new default eucast_rules 2020-05-20 12:00:17 +02:00
f68d71a5e0 (v1.1.0.9007) lose dependencies 2020-05-16 21:40:50 +02:00
7f3da74b17 (v1.1.0.9004) lose dependencies 2020-05-16 13:05:47 +02:00
e0f4c93e82 v1.1.0 2020-04-17 19:16:30 +02:00
d1cb7d3b6f (v1.0.1.9005) as.mo() improvements 2020-04-13 21:09:56 +02:00
f444c24ed3 (v1.0.1) v 1.0.1 2020-02-23 20:56:11 +01:00
ea32e9916a (v1.0.0.9005) info printing only in interactive mode 2020-02-21 21:13:38 +01:00
bb3728f023 (v1.0.0.9003) prepare for short update 2020-02-21 13:13:34 +01:00
6408911922 (v1.0.0.9002) fix lintr 2020-02-20 20:31:42 +01:00
bdb26f624f (v1.0.0.9001) add uti to as.rsi() 2020-02-20 17:21:01 +01:00
c6184a0fb8 (v0.9.0.9029) add uti to as.rsi() 2020-02-20 13:19:23 +01:00
5e2b294351 (v0.9.0.9026) update documentation 2020-02-17 14:38:01 +01:00
11f00f8a0a (v0.9.0.9025) update as.rsi documentation 2020-02-16 22:43:56 +01:00
9b8b02960e (v0.9.0.9023) EUCAST 2020 guidelines 2020-02-14 19:54:13 +01:00
a13c62e6e8 (v0.9.0.9016) Support SNOMED codes 2020-01-27 19:14:23 +01:00
9a3891efe4 (v0.9.0.9014) Machine reading guidelines 2020-01-27 11:05:39 +01:00
423d1d3c41 (v0.9.0.9013) Support for LOINC codes 2020-01-26 20:38:54 +01:00
64f5ceef03 (v0.9.0.9009) antibiotics data set update 2020-01-08 11:30:33 +01:00
ced1a7b7fa (v0.9.0.9008) Happy new year! Add lifecycles 2020-01-05 17:22:09 +01:00
bb2ed55842 (v0.9.0) v0.9.0 2019-11-29 19:43:23 +01:00
9feef53bde (v0.8.0.9037) complete documentation rewrite 2019-11-28 23:00:37 +01:00
c5f00f4a9f (v0.8.0.9036) complete documentation rewrite 2019-11-28 22:32:17 +01:00
267320f15f (v0.8.0.9033) antivirals data set, cleanup 2019-11-18 12:10:47 +01:00
248b45da71 (v0.8.0.9030) depend on tidyr >= 1.0.0 2019-11-11 10:46:39 +01:00
d22834c5b8 (v0.8.0.9029) cleanup 2019-11-10 15:50:18 +01:00
59ededa8dc (v0.8.0.9027) adding susceptibility() and resistance() 2019-11-10 12:16:56 +01:00
ef640add2d (v0.8.0.9021) update vignettes 2019-11-09 11:33:22 +01:00
e2d05cb1b0 (v0.8.0.9017) keywords update 2019-11-06 14:43:23 +01:00
29e448883d (v0.8.0.9008) new verbose mode for MDROs 2019-11-03 22:24:42 +01:00
2c0f3534bf (v0.7.1.9106) v0.8.0 2019-10-13 09:31:58 +02:00
34a82d091e (v0.7.1.9067) honor info 2019-08-28 17:12:48 +02:00
248638ad91 (v0.7.1.9065) bug-drug fix 2019-08-27 22:41:09 +02:00
93be16484b (v0.7.1.9063) septic_patients -> example_isolates 2019-08-27 16:45:42 +02:00
7108454ba5 (v0.7.1.9055) algorithm improvements 2019-08-13 16:15:08 +02:00
bd252a2984 (v0.7.1.9036) preserve ab/mo classes in subsetting 2019-08-12 14:48:09 +02:00
1d423cca89 (v0.7.1.9035) cephalosporins and unit tests 2019-08-11 19:07:26 +02:00
6a349bf757 (v0.7.1.9032) eucast_rules() improvements 2019-08-09 14:28:46 +02:00
22a206ffd8 (v0.7.1.9030) eucast_rules() fix 2019-08-08 15:52:07 +02:00
90c874025a (v0.7.1.9027) tibble printing 2019-08-07 15:37:39 +02:00
14c47da656 (v0.7.1.9026) NAMESPACE fix 2019-08-06 15:57:51 +02:00
b7e2d7b9b8 (v0.7.1.9016) deps 2019-07-29 17:34:57 +02:00
240f03a672 (v0.7.1.9015) Remove freq() 2019-07-29 13:33:48 +02:00
68230d0712 (v0.7.1.90012) mo_shortname fix 2019-07-10 21:36:51 +02:00
c57ad26c5b (v0.7.1.9007) mdro update 2019-07-04 15:26:07 +02:00
156d550895 (v0.7.1.9005) new rsi calculations, atc class removal 2019-07-01 14:03:15 +02:00
6013fbefae (v0.7.1.9003) website update 2019-06-23 21:35:17 +02:00
c9156c004a (v0.7.0.9013) mo_synonym fix 2019-06-22 14:49:12 +02:00
9c39c35f86 (v0.7.0.9010) mo_synonyms, plot/barplot fixes 2019-06-16 21:42:40 +02:00
f02679fb63 (v0.7.0.9001) new pathovars, small fixes 2019-06-07 22:47:37 +02:00
270aa0dd33 v0.7.0 2019-06-03 17:45:22 +02:00
702da574c0 website update 2019-06-02 19:50:22 +02:00
8de0495008 (v0.6.1.9052) website update 2019-06-01 21:28:18 +02:00
2667fff8a7 (v0.6.1.9050) support staged install 2019-06-01 20:40:49 +02:00
493ae2ba0c (v0.6.1.9044) first_isolate fix for species 2019-05-31 14:25:11 +02:00
62e6f41961 website update 2019-05-29 00:36:48 +02:00
4bf6a06935 website update 2019-05-23 18:53:18 +02:00
60983a1640 added mdr_tb() 2019-05-23 16:58:59 +02:00
6eb08a2ea3 new git flow to repository 2019-05-20 14:16:53 +02:00
38a4421450 CI tests 2019-05-13 10:10:16 +02:00
68cc7ef0d0 new antibiotics 2019-05-10 16:44:59 +02:00
461eec9bac cfta streptococci, codecov.yml 2019-04-09 14:59:17 +02:00
429814c29b v0.6.0 2019-03-27 11:22:36 +01:00
fdffc2791b memory for as.mo() 2019-03-15 13:57:25 +01:00
74e0ae21fd con WHONET, filter ab class 2019-03-05 22:47:42 +01:00
2565b60024 rlang dependency, new fungi 2019-02-28 13:56:28 +01:00