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9cd4ab928a
|
speed improvement as.mo, freq title
|
2018-10-31 12:10:49 +01:00 |
|
|
|
7997de6a6d
|
mdro and 1st isolate improvements
|
2018-10-23 11:15:05 +02:00 |
|
|
|
c2a93b46db
|
breaks param, tidyr dep change, freq markdown
|
2018-10-22 12:32:59 +02:00 |
|
|
|
86b03577a7
|
fix for as.mo, added also_single_tested
|
2018-10-19 13:53:31 +02:00 |
|
|
|
b464dd524a
|
new verbose
|
2018-10-19 00:17:03 +02:00 |
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|
693f64bdbf
|
new EUCAST rules: clinical breakpoints
|
2018-10-17 17:32:34 +02:00 |
|
|
|
d5a41de711
|
parameter combine_IR
|
2018-10-16 09:59:31 +02:00 |
|
|
|
5b5b95a47b
|
count_all and some fixes
|
2018-10-12 16:35:18 +02:00 |
|
|
|
67521394f6
|
more unit tests
|
2018-10-09 15:41:44 +02:00 |
|
|
|
95c9fdc552
|
CRAN fixes for release 0.4.0
https://cran.r-project.org/web/checks/check_results_AMR.html
|
2018-10-09 13:53:33 +02:00 |
|
|
|
ed17db0263
|
renamed year columns to ref
|
2018-10-01 14:44:40 +02:00 |
|
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3119a221e5
|
authors from ITIS, diff for freq
|
2018-10-01 11:39:43 +02:00 |
|
|
|
92c9cc2608
|
diff for freq, fix for mo_shortname
|
2018-09-29 21:54:32 +02:00 |
|
|
|
768fe17324
|
removed clipboard functions as it violated CRAN policies
|
2018-09-28 16:05:18 +02:00 |
|
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|
2b0080995e
|
speed improvement for as.mo, more old taxonomic names
|
2018-09-27 23:23:48 +02:00 |
|
|
|
450992baea
|
new: 1680 old taxonomic names
|
2018-09-25 16:44:40 +02:00 |
|
|
|
da60f27877
|
travis cant find knitr vignette builder
|
2018-09-25 00:36:35 +02:00 |
|
|
|
9c566585b0
|
first inclusion of ITIS data
|
2018-09-24 23:33:29 +02:00 |
|
|
|
df5d82fff3
|
unit tests
|
2018-09-17 21:51:21 +02:00 |
|
|
|
5d80cef338
|
added taxonomic data from ITIS
|
2018-09-17 20:53:32 +02:00 |
|
|
|
7680e4edd8
|
add shortest and longest to freq for characters
|
2018-09-17 09:42:09 +02:00 |
|
|
|
db14781593
|
add labels_rsi_count
|
2018-09-16 22:11:17 +02:00 |
|
|
|
b792a2754e
|
added prevalence column and alterted as.mo algorith to use it, added ab_name as alias
|
2018-09-16 16:43:29 +02:00 |
|
|
|
b0ca49d68d
|
small improvement for is.rsi.eligible, more unit tests
|
2018-09-14 11:54:01 +02:00 |
|
|
|
cb0d74a4f0
|
support for French and Italian, added quote to freq
|
2018-09-10 15:45:25 +02:00 |
|
|
|
b83e6a9380
|
algoritm improvement, removed all Catabacter except for C. hongkongensis
|
2018-09-10 11:40:54 +02:00 |
|
|
|
4816419f0c
|
AI improvements for microorganisms
|
2018-09-09 12:11:44 +02:00 |
|
|
|
936198372e
|
translate CoNS
|
2018-09-08 16:24:12 +02:00 |
|
|
|
26f5be0033
|
support for portuguese, language determination based on system
|
2018-09-08 16:06:47 +02:00 |
|
|
|
de36b0be23
|
fix for empty values in mo_property
|
2018-09-05 12:21:27 +02:00 |
|
|
|
e39a9a8b05
|
added mo_shortname
|
2018-09-05 10:51:46 +02:00 |
|
|
|
b388e3fee7
|
Support for German and Spanish microorganism properties, cleanup
|
2018-09-04 11:33:30 +02:00 |
|
|
|
75fe4d401f
|
new MOs, cleanup
|
2018-09-01 21:19:46 +02:00 |
|
|
|
5965d3c794
|
replaced bactid by mo
|
2018-08-31 13:36:19 +02:00 |
|
|
|
d9e68e0a50
|
ggplot_rsi example update, more unit tests
|
2018-08-29 16:25:57 +02:00 |
|
|
|
029157b3be
|
163 new trade names, added ab_tradenames
|
2018-08-29 12:27:37 +02:00 |
|
|
|
972fc4f6c7
|
ab_* functions, mo_* functions, 180 new microorganisms, speed improvement for bactid
|
2018-08-28 13:51:13 +02:00 |
|
|
|
2acdb1981c
|
atc and bactid functions, readme update
|
2018-08-25 22:01:14 +02:00 |
|
|
|
460dee789f
|
typo
|
2018-08-24 14:33:35 +02:00 |
|
|
|
baaf4cc3e1
|
few extra tests
|
2018-08-24 14:18:38 +02:00 |
|
|
|
a100d07da6
|
removed ratio, better rsi_calc, update for freq
|
2018-08-24 11:08:20 +02:00 |
|
|
|
febd0ca885
|
geom_rsi - any parameter
|
2018-08-23 21:27:15 +02:00 |
|
|
|
8ab93b6688
|
unit tests
|
2018-08-23 01:01:50 +02:00 |
|
|
|
da5379c881
|
quasiquotation, alpha for geom_rsi
|
2018-08-23 00:40:36 +02:00 |
|
|
|
3e87c8f409
|
count_* functions
|
2018-08-22 00:02:26 +02:00 |
|
|
|
b0995362af
|
testthat error
|
2018-08-14 12:00:01 +02:00 |
|
|
|
533342583a
|
Travis checks
|
2018-08-14 11:37:40 +02:00 |
|
|
|
7584c929a5
|
new AppVeyor environment
|
2018-08-14 08:57:17 +02:00 |
|
|
|
59ce1eb1b1
|
ggplot_rsi improvements
|
2018-08-13 16:42:37 +02:00 |
|
|
|
dba06c3295
|
abname improvement, small fixes
|
2018-08-13 11:00:53 +02:00 |
|
