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python-wrapper

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v0.1.1

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v0.4.0

v0.5.0

v0.6.0

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067233b9c1 Update .gitlab-ci.yml dr. M.S. (Matthijs) Berends 2018-10-26 06:58:41 +00:00
a2e2a281a5 Update .gitlab-ci.yml dr. M.S. (Matthijs) Berends 2018-10-26 06:24:32 +00:00
5538db97d9 Update .gitlab-ci.yml dr. M.S. (Matthijs) Berends 2018-10-26 06:15:36 +00:00
ac5421dfee Update .gitlab-ci.yml dr. M.S. (Matthijs) Berends 2018-10-25 18:32:00 +00:00
f79ab3186b Update .gitlab-ci.yml dr. M.S. (Matthijs) Berends 2018-10-25 16:20:39 +00:00
7df4db85b6 Update .gitlab-ci.yml dr. M.S. (Matthijs) Berends 2018-10-24 20:01:44 +00:00
d1029e3439 Update .gitlab-ci.yml dr. M.S. (Matthijs) Berends 2018-10-24 19:56:29 +00:00
4f556f9dbf Update .gitlab-ci.yml dr. M.S. (Matthijs) Berends 2018-10-24 19:25:56 +00:00
639e6505d8 Update .gitlab-ci.yml dr. M.S. (Matthijs) Berends 2018-10-24 19:14:48 +00:00
24327bc7de Update .gitlab-ci.yml dr. M.S. (Matthijs) Berends 2018-10-24 19:14:11 +00:00
1c5b413146 Update .gitlab-ci.yml dr. M.S. (Matthijs) Berends 2018-10-24 18:38:51 +00:00
986f795cb2 Update .gitlab-ci.yml dr. M.S. (Matthijs) Berends 2018-10-24 18:26:21 +00:00
0fefd73ae4 Update .gitlab-ci.yml dr. M.S. (Matthijs) Berends 2018-10-24 18:19:14 +00:00
db0e2a1413 Update .gitlab-ci.yml dr. M.S. (Matthijs) Berends 2018-10-24 18:15:56 +00:00
ed50867535 Update .gitlab-ci.yml dr. M.S. (Matthijs) Berends 2018-10-24 18:10:53 +00:00
7247dc6989 Update .gitlab-ci.yml dr. M.S. (Matthijs) Berends 2018-10-24 17:41:07 +00:00
e75e05cc61 Update .gitlab-ci.yml dr. M.S. (Matthijs) Berends 2018-10-24 17:40:54 +00:00
2ea047838c Update .gitlab-ci.yml dr. M.S. (Matthijs) Berends 2018-10-24 17:40:36 +00:00
ef5cc4cb5f Update .gitlab-ci.yml dr. M.S. (Matthijs) Berends 2018-10-24 17:40:07 +00:00
5d1ddbbaaf Update .gitlab-ci.yml dr. M.S. (Matthijs) Berends 2018-10-24 17:39:10 +00:00
b4e71cdc4f gitlab ci dr. M.S. (Matthijs) Berends 2018-10-23 23:17:53 +02:00
d681236791 gitlab ci dr. M.S. (Matthijs) Berends 2018-10-23 22:55:21 +02:00
19f056a6d7 xml2 dep for gitlab ci dr. M.S. (Matthijs) Berends 2018-10-23 22:25:53 +02:00
60747e56f0 gitlab fix dr. M.S. (Matthijs) Berends 2018-10-23 21:37:49 +02:00
9fd38afeb1 CI fix gitlab dr. M.S. (Matthijs) Berends 2018-10-23 21:26:57 +02:00
f4d6e1dafe CI fixes dr. M.S. (Matthijs) Berends 2018-10-23 21:17:05 +02:00
99323e704d linux deps dr. M.S. (Matthijs) Berends 2018-10-23 20:38:18 +02:00
0834bdfabc fix for gitlab pipeline, add covr to appveyor dr. M.S. (Matthijs) Berends 2018-10-23 20:04:11 +02:00
160e025609 try to fix gitlab pipelines dr. M.S. (Matthijs) Berends 2018-10-23 19:49:31 +02:00
87757748bd switch to gitlab dr. M.S. (Matthijs) Berends 2018-10-23 16:49:40 +02:00
707aa20a37 fixes dr. M.S. (Matthijs) Berends 2018-10-23 14:59:36 +02:00
0062a3facb Add .gitlab-ci.yml dr. M.S. (Matthijs) Berends 2018-10-23 12:53:42 +00:00
7997de6a6d mdro and 1st isolate improvements dr. M.S. (Matthijs) Berends 2018-10-23 11:15:05 +02:00
299c5bea43 na freq, removed factors dr. M.S. (Matthijs) Berends 2018-10-23 09:42:26 +02:00
9c56257da1 freq - print title bold in markdown dr. M.S. (Matthijs) Berends 2018-10-22 13:06:54 +02:00
c2a93b46db breaks param, tidyr dep change, freq markdown dr. M.S. (Matthijs) Berends 2018-10-22 12:32:59 +02:00
ec15b82fd6 param header for freq dr. M.S. (Matthijs) Berends 2018-10-19 21:52:08 +02:00
86b03577a7 fix for as.mo, added also_single_tested dr. M.S. (Matthijs) Berends 2018-10-19 13:53:31 +02:00
032c0d51ef better verbose in EUCAST dr. M.S. (Matthijs) Berends 2018-10-19 00:57:10 +02:00
b464dd524a new verbose dr. M.S. (Matthijs) Berends 2018-10-19 00:17:03 +02:00
5727800b9a readme fix dr. M.S. (Matthijs) Berends 2018-10-18 21:43:12 +02:00
0ef91be3ac param rules for EUCAST dr. M.S. (Matthijs) Berends 2018-10-18 12:10:10 +02:00
693f64bdbf new EUCAST rules: clinical breakpoints dr. M.S. (Matthijs) Berends 2018-10-17 17:32:34 +02:00
d5a41de711 parameter combine_IR dr. M.S. (Matthijs) Berends 2018-10-16 09:59:31 +02:00
5b5b95a47b count_all and some fixes dr. M.S. (Matthijs) Berends 2018-10-12 16:35:18 +02:00
e7d937d36e update NEWS dr. M.S. (Matthijs) Berends 2018-10-10 10:50:19 +02:00
67521394f6 more unit tests dr. M.S. (Matthijs) Berends 2018-10-09 15:41:44 +02:00
95c9fdc552 CRAN fixes for release 0.4.0 https://cran.r-project.org/web/checks/check_results_AMR.html dr. M.S. (Matthijs) Berends 2018-10-09 13:53:33 +02:00
c7c57f4042 0.4.0, just published on CRAN v0.4.0 dr. M.S. (Matthijs) Berends 2018-10-01 19:36:42 +02:00
6d761436f7 benchmarks on readme and speed improvement for direct mo codes dr. M.S. (Matthijs) Berends 2018-10-01 16:26:02 +02:00
ed17db0263 renamed year columns to ref dr. M.S. (Matthijs) Berends 2018-10-01 14:44:40 +02:00
3119a221e5 authors from ITIS, diff for freq dr. M.S. (Matthijs) Berends 2018-10-01 11:39:43 +02:00
92c9cc2608 diff for freq, fix for mo_shortname dr. M.S. (Matthijs) Berends 2018-09-29 21:54:32 +02:00
a6aa9e95fb completed old taxonomic names dr. M.S. (Matthijs) Berends 2018-09-28 20:13:13 +02:00
768fe17324 removed clipboard functions as it violated CRAN policies dr. M.S. (Matthijs) Berends 2018-09-28 16:05:18 +02:00
2b0080995e speed improvement for as.mo, more old taxonomic names dr. M.S. (Matthijs) Berends 2018-09-27 23:23:48 +02:00
450992baea new: 1680 old taxonomic names dr. M.S. (Matthijs) Berends 2018-09-25 16:44:40 +02:00
da60f27877 travis cant find knitr vignette builder dr. M.S. (Matthijs) Berends 2018-09-25 00:36:35 +02:00
9c566585b0 first inclusion of ITIS data dr. M.S. (Matthijs) Berends 2018-09-24 23:33:29 +02:00
df5d82fff3 unit tests dr. M.S. (Matthijs) Berends 2018-09-17 21:51:21 +02:00
5d80cef338 added taxonomic data from ITIS dr. M.S. (Matthijs) Berends 2018-09-17 20:53:32 +02:00
7680e4edd8 add shortest and longest to freq for characters dr. M.S. (Matthijs) Berends 2018-09-17 09:42:09 +02:00
db14781593 add labels_rsi_count dr. M.S. (Matthijs) Berends 2018-09-16 22:11:17 +02:00
b792a2754e added prevalence column and alterted as.mo algorith to use it, added ab_name as alias dr. M.S. (Matthijs) Berends 2018-09-16 16:43:29 +02:00
b0ca49d68d small improvement for is.rsi.eligible, more unit tests dr. M.S. (Matthijs) Berends 2018-09-14 11:54:01 +02:00
cf5711fb0b algorithm improvement dr. M.S. (Matthijs) Berends 2018-09-14 10:31:21 +02:00
d049ec9e69 ggplot2_rsi fix dr. M.S. (Matthijs) Berends 2018-09-13 14:48:34 +02:00
cb0d74a4f0 support for French and Italian, added quote to freq dr. M.S. (Matthijs) Berends 2018-09-10 15:45:25 +02:00
b83e6a9380 algoritm improvement, removed all Catabacter except for C. hongkongensis dr. M.S. (Matthijs) Berends 2018-09-10 11:40:54 +02:00
4816419f0c AI improvements for microorganisms dr. M.S. (Matthijs) Berends 2018-09-09 12:11:44 +02:00
936198372e translate CoNS dr. M.S. (Matthijs) Berends 2018-09-08 16:24:12 +02:00
26f5be0033 support for portuguese, language determination based on system dr. M.S. (Matthijs) Berends 2018-09-08 16:06:47 +02:00
b8a6c9af19 allow failure on macOS dr. M.S. (Matthijs) Berends 2018-09-07 10:20:01 +02:00
0de65438b1 vignet fix dr. M.S. (Matthijs) Berends 2018-09-07 09:32:31 +02:00
c5073f2fd1 small fix for microorganisms data set dr. M.S. (Matthijs) Berends 2018-09-06 16:50:03 +02:00
de36b0be23 fix for empty values in mo_property dr. M.S. (Matthijs) Berends 2018-09-05 12:21:27 +02:00
e39a9a8b05 added mo_shortname dr. M.S. (Matthijs) Berends 2018-09-05 10:51:46 +02:00
790bd1622d added vanA to vanE positive Enterococci dr. M.S. (Matthijs) Berends 2018-09-05 09:49:19 +02:00
b388e3fee7 Support for German and Spanish microorganism properties, cleanup dr. M.S. (Matthijs) Berends 2018-09-04 11:33:30 +02:00
5405002119 news update dr. M.S. (Matthijs) Berends 2018-09-03 11:22:28 +02:00
e25dd0e282 fix for joins dr. M.S. (Matthijs) Berends 2018-09-03 10:04:49 +02:00
75fe4d401f new MOs, cleanup dr. M.S. (Matthijs) Berends 2018-09-01 21:19:46 +02:00
5965d3c794 replaced bactid by mo dr. M.S. (Matthijs) Berends 2018-08-31 13:36:19 +02:00
98ff131680 support for older versions of ggplot2 dr. M.S. (Matthijs) Berends 2018-08-29 16:39:28 +02:00
d654444c8e re added nrow dr. M.S. (Matthijs) Berends 2018-08-29 16:35:32 +02:00
d9e68e0a50 ggplot_rsi example update, more unit tests dr. M.S. (Matthijs) Berends 2018-08-29 16:25:57 +02:00
029157b3be 163 new trade names, added ab_tradenames dr. M.S. (Matthijs) Berends 2018-08-29 12:27:37 +02:00
972fc4f6c7 ab_* functions, mo_* functions, 180 new microorganisms, speed improvement for bactid dr. M.S. (Matthijs) Berends 2018-08-28 13:51:13 +02:00
2acdb1981c atc and bactid functions, readme update dr. M.S. (Matthijs) Berends 2018-08-25 22:01:14 +02:00
460dee789f typo dr. M.S. (Matthijs) Berends 2018-08-24 14:33:35 +02:00
baaf4cc3e1 few extra tests dr. M.S. (Matthijs) Berends 2018-08-24 14:18:38 +02:00
a100d07da6 removed ratio, better rsi_calc, update for freq dr. M.S. (Matthijs) Berends 2018-08-24 11:08:20 +02:00
0c0e538ef4 dependencies dr. M.S. (Matthijs) Berends 2018-08-23 22:05:17 +02:00
febd0ca885 geom_rsi - any parameter dr. M.S. (Matthijs) Berends 2018-08-23 21:27:15 +02:00
eee122825c rlang dep for macOS dr. M.S. (Matthijs) Berends 2018-08-23 01:18:58 +02:00
8ab93b6688 unit tests dr. M.S. (Matthijs) Berends 2018-08-23 01:01:50 +02:00
da5379c881 quasiquotation, alpha for geom_rsi dr. M.S. (Matthijs) Berends 2018-08-23 00:40:36 +02:00
43ba16f8ed

small change in mutate example MS Berends 2018-08-22 15:20:00 +02:00
87d08905cc

small change in mutate example Christian Luz 2018-08-22 12:55:05 +02:00
3e87c8f409 count_* functions dr. M.S. (Matthijs) Berends 2018-08-22 00:02:26 +02:00