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v2.0.0

v2.1.0

v2.1.1

02322ac2ee Fix PK/PD breakpoints dr. M.S. (Matthijs) Berends 2023-04-19 00:31:31 +02:00
dd75cf872c Built site for AMR: 2.0.0.9009@cabffb2 github-actions 2023-04-17 09:37:31 +00:00
cabffb22fd anaerobic codes dr. M.S. (Matthijs) Berends 2023-04-17 11:26:19 +02:00
9d1e78f897 Built site for AMR: 2.0.0.9008@ad3061c github-actions 2023-04-15 08:42:06 +00:00
ad3061c754 unit test dr. M.S. (Matthijs) Berends 2023-04-15 10:32:37 +02:00
e382efa66b Built site for AMR: 2.0.0.9007@1a02d30 github-actions 2023-04-15 07:41:57 +00:00
1a02d302d4 Fix translatable strings dr. M.S. (Matthijs) Berends 2023-04-15 09:32:13 +02:00
5491fb7088 Built site for AMR: 2.0.0.9006@ed70f95 github-actions 2023-04-15 05:24:07 +00:00
ed70f95380 Fix clinical breakpoints dr. M.S. (Matthijs) Berends 2023-04-14 23:14:34 +02:00
cc245a41a0 Built site for AMR: 2.0.0.9005@147f911 github-actions 2023-04-14 09:23:10 +00:00
147f9112e9 Fix some WHONET codes dr. M.S. (Matthijs) Berends 2023-04-14 11:12:26 +02:00
4f0b1843a3 Built site for AMR: 2.0.0.9004@549790c github-actions 2023-03-20 21:10:09 +00:00
549790c2a6 website dr. M.S. (Matthijs) Berends 2023-03-20 21:59:50 +01:00
bd4f12016d Built site for AMR: 2.0.0.9003@c28cfa3 github-actions 2023-03-16 08:03:33 +00:00
c28cfa3a77 fix documentation dr. M.S. (Matthijs) Berends 2023-03-16 08:55:37 +01:00
f56524ba9c Built site for AMR: 2.0.0.9002@dd7cc86 github-actions 2023-03-14 19:00:19 +00:00
dd7cc86485 help page %like% dr. M.S. (Matthijs) Berends 2023-03-14 19:49:50 +01:00
e72c161f5f Built site for AMR: 2.0.0@68aa98f github-actions 2023-03-12 15:05:25 +00:00
68aa98f294 website dr. M.S. (Matthijs) Berends 2023-03-12 15:59:25 +01:00
cb279602b6 Built site for AMR: 2.0.0@dee675e github-actions 2023-03-12 13:14:27 +00:00
dee675e717 Version 2.0 on CRAN v2.0.0 dr. M.S. (Matthijs) Berends 2023-03-12 14:07:45 +01:00
2f947f2a87 Built site for AMR: 1.8.2.9152@80cfc50 github-actions 2023-03-12 12:10:15 +00:00
80cfc503c2 check for 2.0 dr. M.S. (Matthijs) Berends 2023-03-12 13:02:37 +01:00
cf002cfefa Built site for AMR: 1.8.2.9151@9179e98 github-actions 2023-03-11 16:23:32 +00:00
9179e98e12 patient ID in first isolate dr. M.S. (Matthijs) Berends 2023-03-11 17:13:19 +01:00
7cc570249b Built site for AMR: 1.8.2.9150@7ad8635 github-actions 2023-03-11 16:02:25 +00:00
7ad8635994 documentation for 'data.table' AB selectors dr. M.S. (Matthijs) Berends 2023-03-11 16:54:02 +01:00
45e840c02f update NEWS dr. M.S. (Matthijs) Berends 2023-03-11 14:43:31 +01:00
7f1c20a0e8 Built site for AMR: 1.8.2.9148@262598b github-actions 2023-03-11 13:32:27 +00:00
262598b8d7 support for old rsi arguments dr. M.S. (Matthijs) Berends 2023-03-11 14:24:34 +01:00
0484d7ab4d Built site for AMR: 1.8.2.9147@4416394 github-actions 2023-02-26 20:34:01 +00:00
4416394e10 website update dr. M.S. (Matthijs) Berends 2023-02-26 21:26:58 +01:00
0be2d50036 Built site for AMR: 1.8.2.9146@1d3d7d4 github-actions 2023-02-24 19:02:09 +00:00
1d3d7d40bc get episode unit tests dr. M.S. (Matthijs) Berends 2023-02-24 19:54:56 +01:00
074df34e9a Built site for AMR: 1.8.2.9145@2c5a9bb github-actions 2023-02-24 16:15:07 +00:00
2c5a9bb622 new relative episode determination in get_episode(), fix for plotting disk/MIC values dr. M.S. (Matthijs) Berends 2023-02-24 17:06:30 +01:00
9857914f74 Built site for AMR: 1.8.2.9144@92029c9 github-actions 2023-02-24 09:40:06 +00:00
92029c9e95 remove note dr. M.S. (Matthijs) Berends 2023-02-24 10:31:36 +01:00
82ad5d095f Built site for AMR: 1.8.2.9143@049baf0 github-actions 2023-02-24 08:51:48 +00:00
049baf0a71 fix for antibiograms on R < 3.5 dr. M.S. (Matthijs) Berends 2023-02-24 09:43:10 +01:00
09b3187184 Built site for AMR: 1.8.2.9142@e70f2cd github-actions 2023-02-23 15:36:44 +00:00
e70f2cd32c knitr format dr. M.S. (Matthijs) Berends 2023-02-23 16:27:40 +01:00
fefbb46ec6 Built site for AMR: 1.8.2.9141@a84101d github-actions 2023-02-22 15:34:03 +00:00
a84101db08 N for only 1 AB in dr. M.S. (Matthijs) Berends 2023-02-22 16:26:13 +01:00
705ab0e847 Built site for AMR: 1.8.2.9140@551aaf6 github-actions 2023-02-22 15:09:09 +00:00
551aaf6517 auto-remove missing ABs in antibiogram() dr. M.S. (Matthijs) Berends 2023-02-22 16:00:52 +01:00
1fe0350d15 Built site for AMR: 1.8.2.9139@c2cfc5e github-actions 2023-02-22 14:50:02 +00:00
c2cfc5ef84 fix for antibiogram(), transform WHONET data set to sir dr. M.S. (Matthijs) Berends 2023-02-22 15:40:05 +01:00
69dc8795ae Built site for AMR: 1.8.2.9138@dad2530 github-actions 2023-02-22 13:47:35 +00:00
dad25302f2 make rsi work in more cases, documentation update dr. M.S. (Matthijs) Berends 2023-02-22 14:38:57 +01:00
8685119254 Built site for AMR: 1.8.2.9137@380cbec github-actions 2023-02-18 14:06:39 +00:00
380cbec0e8 prehook dr. M.S. (Matthijs) Berends 2023-02-18 14:58:02 +01:00
8d902410f9 unit tests dr. M.S. (Matthijs) Berends 2023-02-18 14:56:06 +01:00
cdada2f940 Built site for AMR: 1.8.2.9135@8dcf101 github-actions 2023-02-18 12:17:35 +00:00
8dcf101a9c website dr. M.S. (Matthijs) Berends 2023-02-18 13:08:08 +01:00
ba255ddb00 website dr. M.S. (Matthijs) Berends 2023-02-18 11:57:17 +01:00
2183549fea Built site for AMR: 1.8.2.9133@e890360 github-actions 2023-02-17 12:20:23 +00:00
e890360986 website syntax update dr. M.S. (Matthijs) Berends 2023-02-17 11:39:00 +01:00
550fd47250 Built site for AMR: 1.8.2.9132@714a048 github-actions 2023-02-17 08:54:21 +00:00
714a048fa9 italicise antibiogram dr. M.S. (Matthijs) Berends 2023-02-17 09:42:51 +01:00
dee759ef9c Built site for AMR: 1.8.2.9131@db28301 github-actions 2023-02-15 18:56:18 +00:00
db2830124f fix for using dplyr::select() dr. M.S. (Matthijs) Berends 2023-02-15 19:48:34 +01:00
a82552dd88 fix for group selections dr. M.S. (Matthijs) Berends 2023-02-15 17:37:49 +01:00
ef716f6ee3 doc fix dr. M.S. (Matthijs) Berends 2023-02-15 17:16:40 +01:00
d4ae174c28 docs dr. M.S. (Matthijs) Berends 2023-02-15 17:03:34 +01:00
6016547f1f support for dplyr 1.1.0 dr. M.S. (Matthijs) Berends 2023-02-15 17:02:10 +01:00
259fe07455 Built site for AMR: 1.8.2.9126@fe41fc2 github-actions 2023-02-14 16:15:56 +00:00
fe41fc2e35 font size dr. M.S. (Matthijs) Berends 2023-02-14 16:57:48 +01:00
d5f778add6 Built site for AMR: 1.8.2.9125@8d37c75 github-actions 2023-02-14 15:11:20 +00:00
8d37c75860 unit tests dr. M.S. (Matthijs) Berends 2023-02-14 15:59:40 +01:00
7d4de8eb35 Built site for AMR: 1.8.2.9124@a4cd38c github-actions 2023-02-14 09:49:26 +00:00
a4cd38c433 fix for R < 3.2, expect_warning() on hold dr. M.S. (Matthijs) Berends 2023-02-14 10:41:01 +01:00
e0b5911d41 Built site for AMR: 1.8.2.9123@3396236 github-actions 2023-02-13 16:04:12 +00:00
3396236eef unit test fixes dr. M.S. (Matthijs) Berends 2023-02-13 16:56:25 +01:00
39d838ee3d Built site for AMR: 1.8.2.9122@b6d2b13 github-actions 2023-02-13 09:34:26 +00:00
b6d2b1398d Fix for antibiogram() in R <=3.4 dr. M.S. (Matthijs) Berends 2023-02-13 10:21:43 +01:00
a15da467b3 Built site for AMR: 1.8.2.9121@45a9697 github-actions 2023-02-12 16:20:08 +00:00
45a9697c84 unit tests dr. M.S. (Matthijs) Berends 2023-02-12 17:10:48 +01:00
7c0ad08c8a Built site for AMR: 1.8.2.9120@68abb00 github-actions 2023-02-12 14:18:14 +00:00
68abb00c59 add include_screening to as.sir() dr. M.S. (Matthijs) Berends 2023-02-12 15:09:54 +01:00
48896ee426 Built site for AMR: 1.8.2.9119@c740967 github-actions 2023-02-12 10:30:57 +00:00
c740967cf2 fix for binding rows dr. M.S. (Matthijs) Berends 2023-02-12 11:20:14 +01:00
31fd5db33b Built site for AMR: 1.8.2.9118@c51fb24 github-actions 2023-02-11 21:38:01 +00:00
c51fb24363 pm_bind_rows dr. M.S. (Matthijs) Berends 2023-02-11 22:28:48 +01:00
b146de6d7f fix for bind_rows2, added 4 langs dr. M.S. (Matthijs) Berends 2023-02-11 21:57:12 +01:00
2007c3eef3 bind_rows dr. M.S. (Matthijs) Berends 2023-02-10 17:09:48 +01:00
62f3d29455 Built site for AMR: 1.8.2.9115@03294c7 github-actions 2023-02-10 15:57:18 +00:00
03294c7901 fix for Salmonella group A, unit tests dr. M.S. (Matthijs) Berends 2023-02-10 16:47:25 +01:00
d6a21b332a Built site for AMR: 1.8.2.9114@bc434db github-actions 2023-02-10 15:26:36 +00:00
bc434db835 bring back antibiogram(), without deps dr. M.S. (Matthijs) Berends 2023-02-10 16:18:00 +01:00
70a7ba0206 fix first isolate dr. M.S. (Matthijs) Berends 2023-02-10 13:13:17 +01:00
1a0dc4bf46 revert back to pre-antibiogram dr. M.S. (Matthijs) Berends 2023-02-09 13:07:39 +01:00
769ace0b66 Built site for AMR: 1.8.2.9111@aa48c6b github-actions 2023-02-08 16:01:47 +00:00
aa48c6bf53 pm fixes dr. M.S. (Matthijs) Berends 2023-02-08 16:51:41 +01:00
822e9de82c pm update, unit test fix? dr. M.S. (Matthijs) Berends 2023-02-08 13:48:06 +01:00
4a54d59f70 tinytest dr. M.S. (Matthijs) Berends 2023-02-06 14:36:31 +01:00
75a4c1ef3e fixes2 dr. M.S. (Matthijs) Berends 2023-02-06 14:34:38 +01:00
f7dd890b79 fixes dr. M.S. (Matthijs) Berends 2023-02-06 12:38:52 +01:00
9e99e66f01 use dplyr where available, new antibiogram() for WISCA, fixed Salmonella Typhi/Paratyphi dr. M.S. (Matthijs) Berends 2023-02-06 11:57:22 +01:00
4b133d4c96 unit tests dr. M.S. (Matthijs) Berends 2023-01-30 17:24:03 +01:00