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2020-01-13 14:51:37 +01:00 · 2020-01-13 14:51:37 +01:00 · 14cffd5876
commit 14cffd5876
parent 0d15293d7a
1 changed files with 0 additions and 141 deletions
--- a/test.yaml
+++ b/test.yaml
@ -1,141 +0,0 @@
-# Set of default parameters for steady Navier-Stokes
-mesh:       '/home/p283370/Desktop/PhD/AORTA/MESH/aorta_coarse/aorta_coarse_marked.h5'
-density: 1.2
-dynamic_viscosity: 0.035
-stokes: False
-
-io:
-    write_hdf5: False
-    write_hdf5_timeseries: False
-    write_xdmf: False
-    write_path: '/home/p283370/Desktop/kalman/results/coarse/dt0.0005'
-    restart:
-        path: ''  # './projects/nse_coa3d/results/test_restart2/' 
-        time: 0
-    write_checkpoints: True
-    write_velocity: 'update'     # tentative
-    log: False
-    write_outlets: False
-    out_mode     :  'u'
-    outlets_path: '/home/p283370/Desktop/kalman/outlets/'
-    theta_path: '/home/p283370/Desktop/kalman/results/'
-    theta_name: 'theta_unique_fine2'
-
-
-boundary_conditions: 
-    - id: 2
-      type: 'dirichlet'
-      value: ['0','0','U*sin(DOLFIN_PI*t/Th)*(t<=ts) + (ts<t)*(afac*U*sin(Delta*DOLFIN_PI*t/Th)*exp(-t*beta))']
-      degree: 3
-      parameters: 
-              U: -60   # 60 original
-              Th: 0.37 
-              t: 0
-              afac: 5613.816803204635
-              beta: 29.466876946384286
-              Delta: 5
-              ts:  0.33
-    - id: 1
-      type: 'dirichlet'
-      value: ['0','0','0']
-      degree: 2
-    - id: 3
-      type: 'windkessel'
-      value: [100,0.01,1000]
-    - id: 4
-      type: 'windkessel'
-      value: [250,0.0001,8000]    # [R,C,R_d]
-    - id: 5
-      type: 'windkessel'
-      value: [250,0.00001,8000]    # [R,C,R_d]
-    - id: 6
-      type: 'windkessel'
-      value: [250,0.0001,8000]    # [R,C,R_d]
-
-
-timemarching:
-    velocity_pressure_coupling: 'fractionalstep'    # monolithic, fractionalstep
-
-    monolithic:
-        timescheme: 'gmp'   # generalized midpoint, steady FIXME TODO
-        theta: 1            # 1: Euler, 0.5: implicit midpoint rule (one-legged)
-        nonlinear:
-            method: 'constant_extrapolation'   # constant_extrapolation, linear_extrapolation, newton, picard, snes
-            maxit: 20
-            init_steps: 30
-            use_aitken: 1   #  0: False, 1: Picard only, 2: all
-            report: 1       # 0: None, 1: residuals, 2: residuals and energy (inflow/driving/forcing via ESSENTIAL Dbcs!)
-            atol: 1.e-6    # note: dot required!!
-            rtol: 1.e-16
-            stol: 0.0
-
-    fractionalstep:
-        scheme: 'CT'      # CT, IPCS
-        coupled_velocity: False     # False faster, True needed if robin_bc implicit
-        robin_bc_velocity_scheme: 'implicit' # explicit, semi-implicit, implicit
-        transpiration_bc_projection: 'robin'      # robin, dirichlet
-        flux_report_normalize_boundary: 1
-
-    T: 0.9       # end time
-    dt: 0.0005
-    write_dt: 0.01
-    checkpoint_dt:  0.01 # <= 0: only last; else value + last
-    report: 1   # 0: print nothing, 1: print time step and writeout, 2: 1 + flux
-
-estimation:
-    boundary_conditions:
-        - id: 2
-          type: 'dirichlet'
-          initial_stddev: [10]
-          parameters: [U]
-
-    measurements:
-        -
-            mesh: '/home/p283370/Desktop/PhD/AORTA/MESH/aorta_coarse/aorta_coarse_marked.h5'
-            fe_degree: 1
-            xdmf_file: '/home/p283370/Desktop/PhD/AORTA/DATA/ct/aorta_coarse/dt0.0005/measurements/meas.h5'
-            file_root: '/home/p283370/Desktop/PhD/AORTA/DATA/ct/aorta_coarse/dt0.0005/measurements/u{i}.h5'
-            indices: 0
-            noise_stddev: 20     # standard deviation of Gaussian noise
-    
-    roukf:
-        particles: 'unique' # unique or simplex
-        observation_operator: 'state'         #state or postprocessing
-        reparameterize: False
-        
-    #observations:
-    #    mesh: '/home/yeye/Desktop/PhD/AORTA/MESH/aorta_coarse/aorta_coarse_marked.h5'
-    #    timeseries: '/home/yeye/Desktop/PhD/AORTA/DATA/ct/aorta_coarse2/measurements'
-    #    stddev: 10.   # noiselevel x VENC
-
-# solver setup
-fem:
-    velocity_space: p1  # p1 p1b/p1+ p2
-    pressure_space: p1  # p1 p0/dg0 dg1
-
-    strain_symmetric: 0
-    convection_skew_symmetric: 1    # aka Temam term
-    stabilization:
-        forced_normal:
-            boundaries:
-            gamma: 10
-        backflow_boundaries: [3,4,5,6]
-        streamline_diffusion:
-            enabled: False
-            parameter: 'shakib'   # standard, shakib, codina, klr
-            length_scale: 'metric' # average, max, metric
-            consistent: False   # deprecated
-            Cinv: ~
-        monolithic:
-            infsup: False    # pspg, pressure-stabilization
-            graddiv: False
-            consistent: False
-            pressure_stab_constant: 1.
-
-    fix_pressure: False
-    fix_pressure_point: [0., 0. , 0.]
-
-linear_solver:
-    method: 'lu'
-    # inputfile: './projects/nse_coa3d/input/pc/MUMPS_default.yaml'
-    # inputfile: './input/pc/fgmres_gamg_rtol1e-6.yaml'