adding poi temp
This commit is contained in:
parent
74785679cb
commit
4764bb4bb8
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@ -51,12 +51,12 @@ def plot_parameters(dat, input_file, deparameterize=False, ref=None):
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with open(inputfile_path) as file:
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inputfile = yaml.full_load(file)
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#true_val = [10,250,250,250,30]
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true_values = {
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3: 10,
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4: 60,
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5: 220,
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6: 160,
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3: 2400,
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4: 4200,
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5: 11000,
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6: 7800,
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2: 100
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}
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@ -71,7 +71,7 @@ def plot_parameters(dat, input_file, deparameterize=False, ref=None):
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for bnd_set in inputfile['boundary_conditions']:
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if bnd_c['id'] == bnd_set['id']:
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ids.append(bnd_c['id'])
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current_val.append(bnd_set['value'][0])
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current_val.append(bnd_set['parameters']['R_d'])
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labels.append('$R_' + str(bnd_c['id']))
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elif 'dirichlet' in bnd_c['type']:
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@ -4,10 +4,10 @@ mesh: './meshes/coaortaH1.h5'
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fluid:
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density: 1.2
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dynamic_viscosity: 0.035
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stokes: False
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stokes: True
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io:
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write_path: 'results/aorta'
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write_path: 'results/aorta_1ms'
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restart:
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path: '' # './projects/nse_coa3d/results/test_restart2/'
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time: 0
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@ -32,34 +32,39 @@ boundary_conditions:
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-
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id: 3
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type: 'windkessel'
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#value: [10,0,0]
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value: [10,0.0008,2400]
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p0: [80,1333.223874]
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#p0: [0,1333.223874]
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parameters:
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R_p: 10
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C: 0.0008
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R_d: 2400
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p0: 80
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conv: 1333.223874
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-
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id: 4
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type: 'windkessel'
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#value: [60,0,0]
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#value: [250,0,0]
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value: [60,0.00034,4200]
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p0: [80,1333.223874]
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#p0: [0,1333.223874]
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parameters:
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R_p: 60
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C: 0.00034
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R_d: 4200
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p0: 80
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conv: 1333.223874
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-
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id: 5
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type: 'windkessel'
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#value: [220,0,0]
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#value: [250,0,0]
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value: [220,0.00034,11000]
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p0: [80,1333.223874]
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#p0: [0,1333.223874]
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parameters:
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R_p: 220
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C: 0.00034
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R_d: 11000
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p0: 80
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conv: 1333.223874
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-
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id: 6
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type: 'windkessel'
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#value: [160,0,0]
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#value: [250,0,0]
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value: [160,0.00034,7800]
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p0: [80,1333.223874]
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#p0: [0,1333.223874]
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parameters:
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R_p: 160
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C: 0.00034
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R_d: 7800
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p0: 80
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conv: 1333.223874
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timemarching:
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velocity_pressure_coupling: 'fractionalstep' # monolithic, fractionalstep
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@ -148,13 +153,14 @@ estimation:
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measurements:
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-
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mesh: '/home/yeye/NuMRI/kalman/meshes/coaortaH3_leo2.0.h5'
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#mesh: '/home/yeye/NuMRI/kalman/meshes/coaortaH3_leo2.0.h5'
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mesh: './meshes/coaortaH1.h5'
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fe_degree: 1
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xdmf_file: 'measurements/aorta/u_all.xdmf'
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file_root: 'measurements/aorta/u{i}.h5'
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indices: 0 # indices of checkpoints to be processed. 0 == all
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velocity_direction: ~
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noise_stddev: 500 # standard deviation of Gaussian noise
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noise_stddev: 0 # standard deviation of Gaussian noise
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roukf:
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particles: 'simplex' # unique or simplex
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@ -0,0 +1,140 @@
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<?xml version="1.0"?>
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<!DOCTYPE Xdmf SYSTEM "Xdmf.dtd" []>
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<Xdmf Version="3.0" xmlns:xi="http://www.w3.org/2001/XInclude">
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<Domain>
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<Grid Name="TimeSeries_pressure" GridType="Collection" CollectionType="Temporal">
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<Grid Name="mesh" GridType="Uniform">
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<Topology NumberOfElements="12332" TopologyType="Tetrahedron" NodesPerElement="4">
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<DataItem Dimensions="12332 4" NumberType="UInt" Format="HDF">p.h5:/Mesh/0/mesh/topology</DataItem>
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</Topology>
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<Geometry GeometryType="XYZ">
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<DataItem Dimensions="2466 3" Format="HDF">p.h5:/Mesh/0/mesh/geometry</DataItem>
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</Geometry>
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<Time Value="0.000000000000000e+00" />
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<Attribute Name="pressure" AttributeType="Scalar" Center="Node">
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<DataItem Dimensions="2466 1" Format="HDF">p.h5:/VisualisationVector/0</DataItem>
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</Attribute>
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</Grid>
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<Grid Name="mesh" GridType="Uniform">
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<Topology NumberOfElements="12332" TopologyType="Tetrahedron" NodesPerElement="4">
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<DataItem Dimensions="12332 4" NumberType="UInt" Format="HDF">p.h5:/Mesh/1/mesh/topology</DataItem>
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</Topology>
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<Geometry GeometryType="XYZ">
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<DataItem Dimensions="2466 3" Format="HDF">p.h5:/Mesh/1/mesh/geometry</DataItem>
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</Geometry>
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<Time Value="9.000000000000000e+00" />
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<Attribute Name="pressure" AttributeType="Scalar" Center="Node">
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<DataItem Dimensions="2466 1" Format="HDF">p.h5:/VisualisationVector/1</DataItem>
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</Attribute>
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</Grid>
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<Grid Name="mesh" GridType="Uniform">
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<Topology NumberOfElements="12332" TopologyType="Tetrahedron" NodesPerElement="4">
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<DataItem Dimensions="12332 4" NumberType="UInt" Format="HDF">p.h5:/Mesh/2/mesh/topology</DataItem>
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</Topology>
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<Geometry GeometryType="XYZ">
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<DataItem Dimensions="2466 3" Format="HDF">p.h5:/Mesh/2/mesh/geometry</DataItem>
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</Geometry>
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<Time Value="1.900000000000000e+01" />
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<Attribute Name="pressure" AttributeType="Scalar" Center="Node">
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<DataItem Dimensions="2466 1" Format="HDF">p.h5:/VisualisationVector/2</DataItem>
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</Attribute>
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</Grid>
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</Topology>
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</Geometry>
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<Time Value="2.900000000000000e+01" />
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<Attribute Name="pressure" AttributeType="Scalar" Center="Node">
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</Attribute>
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</Geometry>
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<Time Value="3.900000000000000e+01" />
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<Attribute Name="pressure" AttributeType="Scalar" Center="Node">
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</Attribute>
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</Grid>
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<Grid Name="mesh" GridType="Uniform">
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</Attribute>
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</Grid>
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<Grid Name="mesh" GridType="Uniform">
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<Geometry GeometryType="XYZ">
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</Geometry>
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<Time Value="5.900000000000000e+01" />
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<Attribute Name="pressure" AttributeType="Scalar" Center="Node">
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<Time Value="6.900000000000000e+01" />
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<Attribute Name="pressure" AttributeType="Scalar" Center="Node">
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</Attribute>
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</Grid>
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<Grid Name="mesh" GridType="Uniform">
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<DataItem Dimensions="12332 4" NumberType="UInt" Format="HDF">p.h5:/Mesh/8/mesh/topology</DataItem>
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<DataItem Dimensions="2466 3" Format="HDF">p.h5:/Mesh/8/mesh/geometry</DataItem>
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<Time Value="7.900000000000000e+01" />
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||||
<Attribute Name="pressure" AttributeType="Scalar" Center="Node">
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</Grid>
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<Grid Name="mesh" GridType="Uniform">
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||||
<Topology NumberOfElements="12332" TopologyType="Tetrahedron" NodesPerElement="4">
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<DataItem Dimensions="12332 4" NumberType="UInt" Format="HDF">p.h5:/Mesh/9/mesh/topology</DataItem>
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</Topology>
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<Geometry GeometryType="XYZ">
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<DataItem Dimensions="2466 3" Format="HDF">p.h5:/Mesh/9/mesh/geometry</DataItem>
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</Geometry>
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<Time Value="8.900000000000000e+01" />
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<Attribute Name="pressure" AttributeType="Scalar" Center="Node">
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<DataItem Dimensions="2466 1" Format="HDF">p.h5:/VisualisationVector/9</DataItem>
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</Attribute>
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</Grid>
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<Grid Name="mesh" GridType="Uniform">
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||||
<Topology NumberOfElements="12332" TopologyType="Tetrahedron" NodesPerElement="4">
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<DataItem Dimensions="12332 4" NumberType="UInt" Format="HDF">p.h5:/Mesh/10/mesh/topology</DataItem>
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</Topology>
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<Geometry GeometryType="XYZ">
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<DataItem Dimensions="2466 3" Format="HDF">p.h5:/Mesh/10/mesh/geometry</DataItem>
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</Geometry>
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<Time Value="9.900000000000000e+01" />
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<Attribute Name="pressure" AttributeType="Scalar" Center="Node">
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<DataItem Dimensions="2466 1" Format="HDF">p.h5:/VisualisationVector/10</DataItem>
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</Attribute>
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</Grid>
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</Grid>
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</Domain>
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</Xdmf>
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@ -0,0 +1,140 @@
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<?xml version="1.0"?>
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||||
<!DOCTYPE Xdmf SYSTEM "Xdmf.dtd" []>
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||||
<Xdmf Version="3.0" xmlns:xi="http://www.w3.org/2001/XInclude">
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||||
<Domain>
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||||
<Grid Name="TimeSeries_velocity" GridType="Collection" CollectionType="Temporal">
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||||
<Grid Name="mesh" GridType="Uniform">
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||||
</Topology>
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||||
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||||
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||||
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|
||||
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|
||||
<Grid Name="mesh" GridType="Uniform">
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||||
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||||
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||||
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||||
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||||
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|
||||
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|
||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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||||
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|
||||
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||||
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||||
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||||
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|
||||
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|
||||
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|
||||
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|
||||
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|
||||
</Topology>
|
||||
<Geometry GeometryType="XYZ">
|
||||
<DataItem Dimensions="2466 3" Format="HDF">u.h5:/Mesh/8/mesh/geometry</DataItem>
|
||||
</Geometry>
|
||||
<Time Value="7.900000000000000e+01" />
|
||||
<Attribute Name="velocity" AttributeType="Vector" Center="Node">
|
||||
<DataItem Dimensions="2466 3" Format="HDF">u.h5:/VisualisationVector/8</DataItem>
|
||||
</Attribute>
|
||||
</Grid>
|
||||
<Grid Name="mesh" GridType="Uniform">
|
||||
<Topology NumberOfElements="12332" TopologyType="Tetrahedron" NodesPerElement="4">
|
||||
<DataItem Dimensions="12332 4" NumberType="UInt" Format="HDF">u.h5:/Mesh/9/mesh/topology</DataItem>
|
||||
</Topology>
|
||||
<Geometry GeometryType="XYZ">
|
||||
<DataItem Dimensions="2466 3" Format="HDF">u.h5:/Mesh/9/mesh/geometry</DataItem>
|
||||
</Geometry>
|
||||
<Time Value="8.900000000000000e+01" />
|
||||
<Attribute Name="velocity" AttributeType="Vector" Center="Node">
|
||||
<DataItem Dimensions="2466 3" Format="HDF">u.h5:/VisualisationVector/9</DataItem>
|
||||
</Attribute>
|
||||
</Grid>
|
||||
<Grid Name="mesh" GridType="Uniform">
|
||||
<Topology NumberOfElements="12332" TopologyType="Tetrahedron" NodesPerElement="4">
|
||||
<DataItem Dimensions="12332 4" NumberType="UInt" Format="HDF">u.h5:/Mesh/10/mesh/topology</DataItem>
|
||||
</Topology>
|
||||
<Geometry GeometryType="XYZ">
|
||||
<DataItem Dimensions="2466 3" Format="HDF">u.h5:/Mesh/10/mesh/geometry</DataItem>
|
||||
</Geometry>
|
||||
<Time Value="9.900000000000000e+01" />
|
||||
<Attribute Name="velocity" AttributeType="Vector" Center="Node">
|
||||
<DataItem Dimensions="2466 3" Format="HDF">u.h5:/VisualisationVector/10</DataItem>
|
||||
</Attribute>
|
||||
</Grid>
|
||||
</Grid>
|
||||
</Domain>
|
||||
</Xdmf>
|
Loading…
Reference in New Issue