meas added
This commit is contained in:
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@ -6,8 +6,7 @@ def compute_relative_error(vcur,vref):
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for i in range(len(vref)):
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eps += ((vcur[i] - vref[i])/vref[i])**2
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return np.sqrt(eps)
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return np.sqrt(eps)/len(vcur)
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@ -15,57 +14,117 @@ def compute_relative_error(vcur,vref):
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vref = [10, 250, 250, 250, 30]
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#case 1
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v_no_case1 = [ 10.05 , 248.34, 250.52 , 254.43 , 29.82]
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v_120_case1 = [ 10.22 , 249.1 , 254.37 , 259.15 , 29.81 ]
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v_70_case1 = [20.38, 211.19, 189.01, 207.09, 28.78]
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v_50_case1 = [90.45, 240.98, 241.03, 316.89, 21.27]
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v_25_case1 = [2012.53, 1004.3, 1172.01, 1755.02, 12.69]
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vnew_120_case1 = [ 10.26 , 249.84, 254.6, 259.69 , 29.81]
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vnew_70_case1 = [ 10.26 , 250.73, 252.78, 256.62 , 29.77]
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vnew_50_case1 = [ 10.27 , 248.41 ,254.71 ,253.01 , 29.82]
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vnew_25_case1 = [ 10.18 , 251.13 ,253.78 ,257.4 , 29.82]
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#case 2
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v_no_case2 = [ 9.77, 249.7 , 251.94, 254.91 , 29.82]
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v_70_case2 = [ 20.7 , 214.77 ,196.47 ,209.31 , 28.76]
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v_50_case2 = [ 88.4, 236.73 ,240.39 ,312.85, 21.22]
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v_120_case2 = [ 9.95, 248.5, 254.4, 253.4, 29.80]
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v_70_case2 = [ 20.7 , 214.77 , 196.47 , 209.31 , 28.76]
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v_50_case2 = [ 88.40, 236.7, 240.4, 312.9, 21.22]
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v_25_case2 = [ 880.4, 747.2, 822.7, 1380, 9.37]
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vnew_70_case2 = [ 10 , 250.24 ,252.05 ,254.98 , 29.76]
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vnew_50_case2 = [ 9.92 ,247.61 ,253.35 ,250.64 ,29.81]
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vnew_120_case2 = [ 10, 246.6, 250.5, 254.5, 29.80]
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vnew_70_case2 = [ 10.00, 250.2, 252.1, 255.0, 29.76]
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vnew_50_case2 = [ 9.92, 247.6, 253.4, 250.6, 29.81]
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vnew_25_case2 = [ 10.04 , 247.95 , 250.51 , 253.49 , 29.8 ]
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eps_ref_case1 = compute_relative_error(v_no_case1,vref)
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#case 3
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v_120_case3 = [ 9.91 , 236.69 , 236.44 , 224.36 ,30.15]
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v_70_case3 = [ 16.48 , 192.8 , 155.69 , 148.34 , 29.01]
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v_50_case3 = [231.07 , 369.12 , 521.28 , 458.69 , 23.66]
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v_25_case3 = [ 0, 0, 0, 0, 0]
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vnew_120_case3 = [ 10.17 , 247.95, 249.76 , 248.29 ,29.91]
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vnew_70_case3 = [ 9.98 , 249.29 , 248.97 , 251.16 ,29.8 ]
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vnew_50_case3 = [ 9.98 , 246.89 , 251.51 , 245.14 , 29.89]
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vnew_25_case3 = [ 9.6 , 244.93 , 244.42 , 245.22 ,29.84]
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#######################################################################
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eps_120_case1 = compute_relative_error(v_120_case1,vref)
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eps_70_case1 = compute_relative_error(v_70_case1,vref)
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eps_new70_case1 = compute_relative_error(vnew_70_case1,vref)
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eps_50_case1 = compute_relative_error(v_50_case1,vref)
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eps_25_case1 = compute_relative_error(v_25_case1,vref)
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eps_new120_case1 = compute_relative_error(vnew_120_case1,vref)
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eps_new70_case1 = compute_relative_error(vnew_70_case1,vref)
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eps_new50_case1 = compute_relative_error(vnew_50_case1,vref)
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eps_new25_case1 = compute_relative_error(vnew_25_case1,vref)
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eps_ref_case2 = compute_relative_error(v_no_case2,vref)
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eps_120_case2 = compute_relative_error(v_120_case2,vref)
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eps_70_case2 = compute_relative_error(v_70_case2,vref)
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eps_new70_case2 = compute_relative_error(vnew_70_case2,vref)
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eps_50_case2 = compute_relative_error(v_50_case2,vref)
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eps_25_case2 = compute_relative_error(v_25_case2,vref)
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eps_new120_case2 = compute_relative_error(vnew_120_case2,vref)
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eps_new70_case2 = compute_relative_error(vnew_70_case2,vref)
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eps_new50_case2 = compute_relative_error(vnew_50_case2,vref)
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eps_new25_case2 = compute_relative_error(vnew_25_case2,vref)
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eps_120_case3 = compute_relative_error(v_120_case3,vref)
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eps_70_case3 = compute_relative_error(v_70_case3,vref)
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eps_50_case3 = compute_relative_error(v_50_case3,vref)
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eps_25_case3 = compute_relative_error(v_25_case3,vref)
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eps_new120_case3 = compute_relative_error(vnew_120_case3,vref)
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eps_new70_case3 = compute_relative_error(vnew_70_case3,vref)
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eps_new50_case3 = compute_relative_error(vnew_50_case3,vref)
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eps_new25_case3 = compute_relative_error(vnew_25_case3,vref)
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print('--------- CASE 1 ---------')
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print('reference error = {e}'.format(e=np.round(100*eps_ref_case1,2)))
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print('venc 120% error = {e}'.format(e=np.round(100*eps_120_case1,2)))
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print('venc 70% error = {e}'.format(e=np.round(100*eps_70_case1,2)))
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print('odv venc 70% error = {e}'.format(e=np.round(100*eps_new70_case1,2)))
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print('venc 50% error = {e}'.format(e=np.round(100*eps_50_case1,2)))
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print('venc 25% error = {e}'.format(e=np.round(100*eps_25_case1,2)))
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print('odv venc 120% error = {e}'.format(e=np.round(100*eps_new120_case1,2)))
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print('odv venc 70% error = {e}'.format(e=np.round(100*eps_new70_case1,2)))
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print('odv venc 50% error = {e}'.format(e=np.round(100*eps_new50_case1,2)))
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print('odv venc 25% error = {e}'.format(e=np.round(100*eps_new25_case1,2)))
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print('--------- CASE 2 ---------')
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print('reference error = {e}'.format(e=np.round(100*eps_ref_case2,2)))
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print('venc 70% error = {e}'.format(e=np.round(100*eps_70_case2,2)))
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print('odv venc 70% error = {e}'.format(e=np.round(100*eps_new70_case2,2)))
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print('venc 50% error = {e}'.format(e=np.round(100*eps_50_case2,2)))
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print('odv venc 50% error = {e}'.format(e=np.round(100*eps_new50_case2,2)))
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print('venc 120% error = {e}'.format(e=np.round(100*eps_120_case2,2)))
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print('venc 70% error = {e}'.format(e=np.round(100*eps_70_case2,2)))
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print('venc 50% error = {e}'.format(e=np.round(100*eps_50_case2,2)))
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print('venc 25% error = {e}'.format(e=np.round(100*eps_25_case2,2)))
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print('odv venc 120% error = {e}'.format(e=np.round(100*eps_new120_case2,2)))
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print('odv venc 70% error = {e}'.format(e=np.round(100*eps_new70_case2,2)))
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print('odv venc 50% error = {e}'.format(e=np.round(100*eps_new50_case2,2)))
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print('odv venc 25% error = {e}'.format(e=np.round(100*eps_new25_case2,2)))
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print('--------- CASE 3 ---------')
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print('venc 120% error = {e}'.format(e=np.round(100*eps_120_case3,2)))
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print('venc 70% error = {e}'.format(e=np.round(100*eps_70_case3,2)))
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print('venc 50% error = {e}'.format(e=np.round(100*eps_50_case3,2)))
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print('venc 25% error = {e}'.format(e=np.round(100*eps_25_case3,2)))
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print('odv venc 120% error = {e}'.format(e=np.round(100*eps_new120_case3,2)))
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print('odv venc 70% error = {e}'.format(e=np.round(100*eps_new70_case3,2)))
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print('odv venc 50% error = {e}'.format(e=np.round(100*eps_new50_case3,2)))
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print('odv venc 25% error = {e}'.format(e=np.round(100*eps_new25_case3,2)))
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@ -25,28 +25,28 @@ boundary_conditions:
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type: 'dirichlet'
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value: ['0','0','-U*sin(DOLFIN_PI*t/Th)*(t<=Th) + (Th<t)*(-3.67949466208*U*sin(9*DOLFIN_PI*t/Th)*exp(-t*10))']
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parameters:
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U: 60
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U: 1
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Th: 0.35
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t: 0
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-
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id: 3
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type: 'windkessel'
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value: [20,0,0]
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value: [10,0,0]
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p0: [0,1333.223874]
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-
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id: 4
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type: 'windkessel'
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value: [500,0,0]
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value: [250,0,0]
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p0: [0,1333.223874]
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-
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id: 5
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type: 'windkessel'
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value: [500,0,0]
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value: [250,0,0]
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p0: [0,1333.223874]
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-
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id: 6
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type: 'windkessel'
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value: [500,0,0]
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value: [250,0,0]
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p0: [0,1333.223874]
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timemarching:
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@ -136,12 +136,10 @@ estimation:
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measurements:
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-
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mesh: './meshes/coaortaH3_leo2.0.h5'
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mesh: '/home/yeye/NuMRI/kalman/meshes/coaortaH3_leo2.0.h5'
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fe_degree: 1
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xdmf_file: 'results/aorta/measurements/Perturbation/Ks12V50/u_all.xdmf'
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file_root: 'results/aorta/measurements/Perturbation/Ks12V50/u{i}.h5'
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#xdmf_file: 'results/aorta/measurements/u_all.xdmf'
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#file_root: 'results/aorta/measurements/u{i}.h5'
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xdmf_file: 'measurements/aorta/Perturbation/Ks12V120/u.xdmf'
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file_root: 'measurements/aorta/Perturbation/Ks12V120/u{i}.h5'
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indices: 0 # indices of checkpoints to be processed. 0 == all
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velocity_direction: ~
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noise_stddev: 15 # standard deviation of Gaussian noise
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@ -151,5 +149,5 @@ estimation:
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observation_operator: 'postprocessing' #state or postprocessing
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reparameterize: True
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ODV_functional:
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enable: True
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VENC: 42 # cm/s ref: 59 for 70% and 42 for 50%
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enable: False
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VENC: 102 # 102,120% 59,70% 42 50%, 21,25%
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BIN
kalman/measurements/aorta/Perturbation/Ks12V120/u.h5
Normal file
BIN
kalman/measurements/aorta/Perturbation/Ks12V120/u.h5
Normal file
Binary file not shown.
260
kalman/measurements/aorta/Perturbation/Ks12V120/u.xdmf
Normal file
260
kalman/measurements/aorta/Perturbation/Ks12V120/u.xdmf
Normal file
@ -0,0 +1,260 @@
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<?xml version="1.0"?>
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<!DOCTYPE Xdmf SYSTEM "Xdmf.dtd" []>
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<Xdmf Version="3.0" xmlns:xi="http://www.w3.org/2001/XInclude">
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<Domain>
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<Grid Name="TimeSeries_velocity" GridType="Collection" CollectionType="Temporal">
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<Grid Name="mesh" GridType="Uniform">
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<Topology NumberOfElements="28742" TopologyType="Tetrahedron" NodesPerElement="4">
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<DataItem Dimensions="28742 4" NumberType="UInt" Format="HDF">u.h5:/Mesh/0/mesh/topology</DataItem>
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</Topology>
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<Geometry GeometryType="XYZ">
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<DataItem Dimensions="5946 3" Format="HDF">u.h5:/Mesh/0/mesh/geometry</DataItem>
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</Geometry>
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<Time Value="0.000000000000000e+00" />
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<Attribute Name="velocity" AttributeType="Vector" Center="Node">
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<DataItem Dimensions="5946 3" Format="HDF">u.h5:/VisualisationVector/0</DataItem>
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</Attribute>
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</Grid>
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<Grid Name="mesh" GridType="Uniform">
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<Topology NumberOfElements="28742" TopologyType="Tetrahedron" NodesPerElement="4">
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<DataItem Dimensions="28742 4" NumberType="UInt" Format="HDF">u.h5:/Mesh/1/mesh/topology</DataItem>
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</Topology>
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<Geometry GeometryType="XYZ">
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<DataItem Dimensions="5946 3" Format="HDF">u.h5:/Mesh/1/mesh/geometry</DataItem>
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</Geometry>
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<Time Value="4.000000000000000e-02" />
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<Attribute Name="velocity" AttributeType="Vector" Center="Node">
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<DataItem Dimensions="5946 3" Format="HDF">u.h5:/VisualisationVector/1</DataItem>
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</Attribute>
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</Grid>
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<Grid Name="mesh" GridType="Uniform">
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<Topology NumberOfElements="28742" TopologyType="Tetrahedron" NodesPerElement="4">
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<DataItem Dimensions="28742 4" NumberType="UInt" Format="HDF">u.h5:/Mesh/2/mesh/topology</DataItem>
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</Topology>
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<Geometry GeometryType="XYZ">
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<DataItem Dimensions="5946 3" Format="HDF">u.h5:/Mesh/2/mesh/geometry</DataItem>
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</Geometry>
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<Time Value="8.000000000000000e-02" />
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<Attribute Name="velocity" AttributeType="Vector" Center="Node">
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<DataItem Dimensions="5946 3" Format="HDF">u.h5:/VisualisationVector/2</DataItem>
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</Attribute>
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</Grid>
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<Grid Name="mesh" GridType="Uniform">
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<Topology NumberOfElements="28742" TopologyType="Tetrahedron" NodesPerElement="4">
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<DataItem Dimensions="28742 4" NumberType="UInt" Format="HDF">u.h5:/Mesh/3/mesh/topology</DataItem>
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</Topology>
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<Geometry GeometryType="XYZ">
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<DataItem Dimensions="5946 3" Format="HDF">u.h5:/Mesh/3/mesh/geometry</DataItem>
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</Geometry>
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<Time Value="1.200000000000000e-01" />
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<Attribute Name="velocity" AttributeType="Vector" Center="Node">
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<DataItem Dimensions="5946 3" Format="HDF">u.h5:/VisualisationVector/3</DataItem>
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</Attribute>
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</Grid>
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<Grid Name="mesh" GridType="Uniform">
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<Topology NumberOfElements="28742" TopologyType="Tetrahedron" NodesPerElement="4">
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<DataItem Dimensions="28742 4" NumberType="UInt" Format="HDF">u.h5:/Mesh/4/mesh/topology</DataItem>
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</Topology>
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<Geometry GeometryType="XYZ">
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<DataItem Dimensions="5946 3" Format="HDF">u.h5:/Mesh/4/mesh/geometry</DataItem>
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</Geometry>
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<Time Value="1.600000000000000e-01" />
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<Attribute Name="velocity" AttributeType="Vector" Center="Node">
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<DataItem Dimensions="5946 3" Format="HDF">u.h5:/VisualisationVector/4</DataItem>
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</Attribute>
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</Grid>
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<Grid Name="mesh" GridType="Uniform">
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<Topology NumberOfElements="28742" TopologyType="Tetrahedron" NodesPerElement="4">
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<DataItem Dimensions="28742 4" NumberType="UInt" Format="HDF">u.h5:/Mesh/5/mesh/topology</DataItem>
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</Topology>
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<Geometry GeometryType="XYZ">
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<DataItem Dimensions="5946 3" Format="HDF">u.h5:/Mesh/5/mesh/geometry</DataItem>
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</Geometry>
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<Time Value="2.000000000000000e-01" />
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<Attribute Name="velocity" AttributeType="Vector" Center="Node">
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<DataItem Dimensions="5946 3" Format="HDF">u.h5:/VisualisationVector/5</DataItem>
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</Attribute>
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</Grid>
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<Grid Name="mesh" GridType="Uniform">
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<Topology NumberOfElements="28742" TopologyType="Tetrahedron" NodesPerElement="4">
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<DataItem Dimensions="28742 4" NumberType="UInt" Format="HDF">u.h5:/Mesh/6/mesh/topology</DataItem>
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</Topology>
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<Geometry GeometryType="XYZ">
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<DataItem Dimensions="5946 3" Format="HDF">u.h5:/Mesh/6/mesh/geometry</DataItem>
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</Geometry>
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||||
<Time Value="2.400000000000000e-01" />
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||||
<Attribute Name="velocity" AttributeType="Vector" Center="Node">
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<DataItem Dimensions="5946 3" Format="HDF">u.h5:/VisualisationVector/6</DataItem>
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||||
</Attribute>
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||||
</Grid>
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||||
<Grid Name="mesh" GridType="Uniform">
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||||
<Topology NumberOfElements="28742" TopologyType="Tetrahedron" NodesPerElement="4">
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<DataItem Dimensions="28742 4" NumberType="UInt" Format="HDF">u.h5:/Mesh/7/mesh/topology</DataItem>
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</Topology>
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||||
<Geometry GeometryType="XYZ">
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<DataItem Dimensions="5946 3" Format="HDF">u.h5:/Mesh/7/mesh/geometry</DataItem>
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||||
</Geometry>
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||||
<Time Value="2.800000000000000e-01" />
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<Attribute Name="velocity" AttributeType="Vector" Center="Node">
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<DataItem Dimensions="5946 3" Format="HDF">u.h5:/VisualisationVector/7</DataItem>
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</Attribute>
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||||
</Grid>
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||||
<Grid Name="mesh" GridType="Uniform">
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||||
<Topology NumberOfElements="28742" TopologyType="Tetrahedron" NodesPerElement="4">
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||||
<DataItem Dimensions="28742 4" NumberType="UInt" Format="HDF">u.h5:/Mesh/8/mesh/topology</DataItem>
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</Topology>
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<Geometry GeometryType="XYZ">
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||||
<DataItem Dimensions="5946 3" Format="HDF">u.h5:/Mesh/8/mesh/geometry</DataItem>
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||||
</Geometry>
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||||
<Time Value="3.200000000000000e-01" />
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||||
<Attribute Name="velocity" AttributeType="Vector" Center="Node">
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<DataItem Dimensions="5946 3" Format="HDF">u.h5:/VisualisationVector/8</DataItem>
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</Attribute>
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||||
</Grid>
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||||
<Grid Name="mesh" GridType="Uniform">
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||||
<Topology NumberOfElements="28742" TopologyType="Tetrahedron" NodesPerElement="4">
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<DataItem Dimensions="28742 4" NumberType="UInt" Format="HDF">u.h5:/Mesh/9/mesh/topology</DataItem>
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||||
</Topology>
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||||
<Geometry GeometryType="XYZ">
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<DataItem Dimensions="5946 3" Format="HDF">u.h5:/Mesh/9/mesh/geometry</DataItem>
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||||
</Geometry>
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<Time Value="3.600000000000000e-01" />
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||||
<Attribute Name="velocity" AttributeType="Vector" Center="Node">
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