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0488d00f20
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(v2.1.1.9111) add betalactams_with_inhibitor(), fixes #175
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2024-12-06 15:44:20 +01:00 |
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640888f408
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(v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update
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2024-07-16 14:53:17 +02:00 |
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68f7795481
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(v2.1.1.9052) unit test fix
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2024-06-16 20:53:50 +02:00 |
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bdbf5198a2
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(v2.1.1.9050) vctrs fix for sir, small documentation fixes
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2024-06-15 15:33:49 +02:00 |
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31207952d3
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(v2.1.1.9043) fix sir translation with as.double
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2024-06-10 10:34:45 +02:00 |
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af74e1d4f2
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(v2.1.1.9041) antibiotics update
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2024-06-08 17:35:25 +02:00 |
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c3ce1b551d
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rename limit_mic_range() to rescale_mic()
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2024-05-24 15:07:41 +02:00 |
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2899b3c840
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new mo_group_members()
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2024-04-19 10:18:21 +02:00 |
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94e9a4d99b
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update MIC implementation
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2024-04-07 20:22:59 +02:00 |
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7be4dabbc0
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support veterinary MIC/disk translation
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2024-02-24 15:16:52 +01:00 |
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c7461766ce
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Remove RSI from package, add extra MIC scale functions
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2023-12-03 11:34:48 +01:00 |
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6f417d0ef2
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add scale_x_mic()
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2023-12-03 01:06:00 +01:00 |
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7cda9e575b
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prepare for CRAN
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2023-10-20 14:51:48 +02:00 |
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91fa73dedf
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add oxygen tolerance
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2023-05-11 21:56:27 +02:00 |
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e70f2cd32c
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knitr format
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2023-02-23 16:27:40 +01:00 |
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bc434db835
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bring back antibiogram(), without deps
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2023-02-10 16:18:00 +01:00 |
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1a0dc4bf46
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revert back to pre-antibiogram
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2023-02-09 13:07:39 +01:00 |
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9e99e66f01
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use dplyr where available, new antibiogram() for WISCA, fixed Salmonella Typhi/Paratyphi
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2023-02-06 11:57:22 +01:00 |
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Dr. Matthijs Berends
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98e62c9af2
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Replace RSI with SIR
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2023-01-21 23:47:20 +01:00 |
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86e28bafce
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add mo_pathogenicity
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2023-01-06 13:35:37 +01:00 |
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f619fb683b
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support new mo codes
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2022-12-27 15:16:15 +01:00 |
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Dr. Matthijs Berends
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496c08d851
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Implement extensive support for antiviral agents support (#77)
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2022-11-13 08:46:10 +01:00 |
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faca6d608a
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mean AMR distance
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2022-10-21 16:02:14 +02:00 |
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178ab5e5ff
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mean AMR distance
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2022-10-21 15:59:31 +02:00 |
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aa2c0639d0
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add confidence intervals (fixed #70), remove combine_IR
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2022-10-20 16:08:01 +02:00 |
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82e3198315
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add add_custom_antimicrobials()
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2022-10-10 20:20:39 +02:00 |
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43c638d122
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add mo_current()
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2022-10-10 10:12:08 +02:00 |
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Dr. Matthijs Berends
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cd2acc4a29
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New mo algorithm, prepare for 2.0
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2022-10-05 09:12:22 +02:00 |
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63fe160322
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new rsi_interpretation_history
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2022-09-01 15:20:57 +02:00 |
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3fca703fbf
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new AMR distance function
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2022-08-30 21:48:02 +02:00 |
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3f2f60ab77
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language updates
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2022-08-19 12:33:14 +02:00 |
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152db9d1b5
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(v1.8.1.9002) fix for table() on MICs
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2022-05-09 17:08:40 +02:00 |
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578e7dfee9
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(v1.7.1.9070) Better WHONET support
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2021-12-13 10:18:28 +01:00 |
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56f1ce328a
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(v1.7.1.9067) Support for Swedish and Russian
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2021-12-12 09:42:03 +01:00 |
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e18c49ed93
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(v1.7.1.9063) not_intrinsic_resistant
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2021-12-09 10:48:25 +01:00 |
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694cf5ba77
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(v1.7.1.9054) mdro() update - fixes #49, first_isolate() speedup
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2021-11-28 23:01:26 +01:00 |
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2ab21b7af3
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(v1.7.1.9026) updated DDDs
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2021-08-19 23:43:02 +02:00 |
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1b62bab007
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(v1.7.1.9025) unit tests
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2021-08-18 23:19:38 +02:00 |
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a2d249962f
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(v1.7.1.9023) Removed filter_ functions, new set_ab_names(), ATC code update, ab selector update, fixes #46 and fixed #47
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2021-08-16 21:54:34 +02:00 |
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625a6fb304
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(v1.7.1.9015) removed S3 taxonomic_name again
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2021-07-07 20:34:05 +02:00 |
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ad10693a1a
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(v1.7.1.9014) rep() for S3 classes
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2021-07-06 16:35:14 +02:00 |
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3bd50710e8
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(v1.7.1.9010) fix for count_* and proportion_*
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2021-07-04 12:00:41 +02:00 |
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1908e7cc7a
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(v1.7.1.9000) ab_class update, unit tests
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2021-06-04 21:07:55 +02:00 |
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2413efd5c1
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(v1.6.0.9048) ab selectors overhaul
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2021-05-19 22:55:42 +02:00 |
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cfb7df823e
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(v1.6.0.9044) betalactams() selector
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2021-05-18 00:53:04 +02:00 |
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12a8d59869
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(v1.6.0.9015) italicise_taxonomy
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2021-05-03 10:47:32 +02:00 |
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93683a4ae2
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(v1.6.0.9010) big first_isolate() update
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2021-04-26 23:57:37 +02:00 |
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70b803dbb6
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(v1.6.0.9008) unlike, bugfix for col_mo naming
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2021-04-23 09:59:36 +02:00 |
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7a3139f7cc
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(v1.6.0.9000) custom EUCAST rules
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2021-04-07 08:37:42 +02:00 |
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8d6ceb6a15
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(v1.5.0.9040) removal of isolate_identifier
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2021-03-08 09:44:17 +01:00 |
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