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36fd99e1f4
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(v2.1.1.9235) New website!
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2025-04-08 15:54:30 +01:00 |
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1fdab84103
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(v2.1.1.9233) chore: make all argument texts full sentences
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2025-03-31 14:53:24 +02:00 |
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63099cd81e
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(v2.1.1.9232) is.mic() iteration, documentation cleanup
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2025-03-31 10:51:31 +02:00 |
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49da312506
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(v2.1.1.9228) repo cleaning
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2025-03-28 11:17:49 +01:00 |
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d77ad6bd6e
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(v2.1.1.9227) unit test fixes
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2025-03-27 15:36:27 +01:00 |
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e6f88241b2
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(v2.1.1.9225) fix geom_hline()/_vline() in MIC plotting, add EUCAT 1.2 in full, add London contribs, fix mo codes, add Kleb pneu complex
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2025-03-26 17:19:17 +01:00 |
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e134e01418
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(v2.1.1.9198) support eucast expert rules 14 and 13.1
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2025-03-14 10:10:35 +01:00 |
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e1b7252ff6
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(v2.1.1.9193) new antimicrobials for screening
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2025-03-12 15:09:28 +01:00 |
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067a8aca66
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(v2.1.1.9192) fix fluoroquinolones and add bleomycin
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2025-03-10 17:04:35 +01:00 |
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f7938289eb
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(v2.1.1.9186) replace antibiotics with antimicrobials!
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2025-03-07 20:43:26 +01:00 |
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8ba2e4ed94
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(v2.1.1.9141) new AMR selectors, eucast overwrite arg
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2025-02-07 18:01:22 +01:00 |
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66833b4f5a
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(v2.1.1.9126) implemented WISCA! Also added top_n_microorganisms() and fixed Python wrapper
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2025-01-26 23:01:17 +01:00 |
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ac1c40d8bb
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(v2.1.1.9081) HUGE microorganisms update for fungi!
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2024-09-29 22:17:56 +02:00 |
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1ca40e8d67
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(v2.1.1.9079) fix for uti in as.sir()
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2024-09-24 15:34:12 +02:00 |
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640888f408
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(v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update
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2024-07-16 14:53:17 +02:00 |
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bc4f8515e2
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new Norwegian link
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2024-03-03 23:24:57 +01:00 |
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7be4dabbc0
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support veterinary MIC/disk translation
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2024-02-24 15:16:52 +01:00 |
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acb534102b
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new species groups, updated clinical breakpoints
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2023-07-08 17:30:05 +02:00 |
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Dr. Matthijs Berends
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f065945d7b
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Update clinical breakpoints and fix some as.mo() bugs (#117)
* Updates clinical breakpoints EUCAST/CLSI 2023, fixes #102, fixes #112, fixes #113, fixes #114, fixes #115
* docs
* implement ecoffs
* unit tests
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2023-06-22 15:10:59 +02:00 |
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c6135d2082
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updated microorganism codes
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2023-05-26 16:10:01 +02:00 |
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c28cfa3a77
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fix documentation
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2023-03-16 08:55:37 +01:00 |
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dad25302f2
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make rsi work in more cases, documentation update
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2023-02-22 14:38:57 +01:00 |
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70a7ba0206
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fix first isolate
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2023-02-10 13:13:17 +01:00 |
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1a0dc4bf46
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revert back to pre-antibiogram
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2023-02-09 13:07:39 +01:00 |
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9e99e66f01
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use dplyr where available, new antibiogram() for WISCA, fixed Salmonella Typhi/Paratyphi
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2023-02-06 11:57:22 +01:00 |
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830c67f1bf
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documentation, unit tests
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2023-01-24 10:20:27 +01:00 |
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eef00069fd
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add all options to documentation
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2023-01-23 20:07:57 +01:00 |
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Dr. Matthijs Berends
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98e62c9af2
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Replace RSI with SIR
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2023-01-21 23:47:20 +01:00 |
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593d740b84
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documentation, file permissions
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2023-01-19 12:54:53 +01:00 |
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8da2467209
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updated taxonomy
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2022-12-12 00:14:56 +01:00 |
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f6862a139d
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expert rules 12.0
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2022-11-14 15:20:39 +01:00 |
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7ca44fb756
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cleanup and new intro logo
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2022-11-13 13:44:25 +01:00 |
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9444ed6d1d
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fix antibiotics error
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2022-10-30 21:05:46 +01:00 |
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d40e0ef20b
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completely updated antibiotics
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2022-10-30 14:31:45 +01:00 |
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85e2fbe4a3
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remove warnings from unit tests
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2022-10-19 11:47:57 +02:00 |
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Dr. Matthijs Berends
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cd2acc4a29
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New mo algorithm, prepare for 2.0
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2022-10-05 09:12:22 +02:00 |
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63fe160322
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new rsi_interpretation_history
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2022-09-01 15:20:57 +02:00 |
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4d050aef7c
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styled, unit test fix
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2022-08-28 10:31:50 +02:00 |
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303d61b473
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new tibble export
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2022-08-27 20:49:37 +02:00 |
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952d16de33
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new, automated website
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2022-08-21 16:37:20 +02:00 |
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1b84564d36
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(v1.8.1.9011) update prevalence of some genera
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2022-06-03 12:43:25 +02:00 |
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08d387b5ce
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(v1.8.0.9005) as.rsi() fix
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2022-03-10 19:33:25 +01:00 |
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18e8525d10
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(v1.8.0.9001) as.mo improvement, fixes #52
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2022-02-26 21:58:23 +01:00 |
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578e7dfee9
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(v1.7.1.9070) Better WHONET support
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2021-12-13 10:18:28 +01:00 |
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e18c49ed93
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(v1.7.1.9063) not_intrinsic_resistant
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2021-12-09 10:48:25 +01:00 |
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7965468ccd
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(v1.7.1.9058) vars selection for set_ab_names()
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2021-12-05 22:06:45 +01:00 |
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694cf5ba77
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(v1.7.1.9054) mdro() update - fixes #49, first_isolate() speedup
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2021-11-28 23:01:26 +01:00 |
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37e6e35ec4
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(v1.7.1.9051) updated taxonomy, updated git branch name
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2021-10-06 13:23:57 +02:00 |
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a44283f998
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(v1.7.1.9024) unit tests
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2021-08-17 14:34:11 +02:00 |
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a2d249962f
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(v1.7.1.9023) Removed filter_ functions, new set_ab_names(), ATC code update, ab selector update, fixes #46 and fixed #47
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2021-08-16 21:54:34 +02:00 |
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