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AMR
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232 Commits

Author SHA1 Message Date
dr. M.S. (Matthijs) Berends 93be16484b (v0.7.1.9063) septic_patients -> example_isolates 2019-08-27 16:45:42 +02:00
dr. M.S. (Matthijs) Berends 7a6fce4eb8 (v0.7.1.9062) mo/ab assignment improvements 2019-08-26 16:02:03 +02:00
dr. M.S. (Matthijs) Berends e46cb0399f (v0.7.1.9059) bug_drug_combinations 2019-08-25 22:53:22 +02:00
dr. M.S. (Matthijs) Berends 04d49a62af (v0.7.1.9057) get_column_abx() improvement 2019-08-15 17:09:27 +02:00
dr. M.S. (Matthijs) Berends 7108454ba5 (v0.7.1.9055) algorithm improvements 2019-08-13 16:15:08 +02:00
dr. M.S. (Matthijs) Berends 6c4822164c Merge branch 'premaster' 2019-08-12 19:32:30 +02:00
dr. M.S. (Matthijs) Berends 5f2733349e (v0.7.1.9038) mo algorithm inprovements 2019-08-12 19:07:15 +02:00
dr. M.S. (Matthijs) Berends bd252a2984 (v0.7.1.9036) preserve ab/mo classes in subsetting 2019-08-12 14:48:09 +02:00
dr. M.S. (Matthijs) Berends 990709c151 Merge branch 'premaster' 2019-08-11 22:23:18 +02:00
dr. M.S. (Matthijs) Berends 1d423cca89 (v0.7.1.9035) cephalosporins and unit tests 2019-08-11 19:07:26 +02:00
dr. M.S. (Matthijs) Berends b790030c5f Merge branch 'premaster' 2019-08-09 09:33:26 +02:00
dr. M.S. (Matthijs) Berends 1ce4b72dd2 (v0.7.1.9031) include_unknown for first_isolate() 2019-08-08 22:39:42 +02:00
dr. M.S. (Matthijs) Berends 43e81bda75 (v0.7.1.9029) unit test 
Merge branch 'premaster'

# Conflicts:
#	tests/testthat/test-resistance_predict.R
 2019-08-07 19:22:46 +02:00
dr. M.S. (Matthijs) Berends f67c739892 (v0.7.1.9029) unit test 2019-08-07 18:56:14 +02:00
dr. M.S. (Matthijs) Berends e5cc09dbc0 Merge branch 'premaster' 2019-08-07 16:27:37 +02:00
dr. M.S. (Matthijs) Berends 90c874025a (v0.7.1.9027) tibble printing 2019-08-07 15:37:39 +02:00
dr. M.S. (Matthijs) Berends 3e9a263fc4 Merge branch 'master' of https://gitlab.com/msberends/AMR 2019-08-06 16:16:57 +02:00
dr. M.S. (Matthijs) Berends 3a1f960f89 (v0.7.1.9024) eucast_rules() fix, new MOs 2019-08-06 14:39:22 +02:00
dr. M.S. (Matthijs) Berends f404db85d4 Merge branch 'premaster' of https://gitlab.com/msberends/AMR into premaster 2019-08-04 13:32:36 +02:00
dr. M.S. (Matthijs) Berends d6ab3896a1 (v0.7.1.9021) CI fix for resistance_predict 2019-08-04 10:48:41 +02:00
dr. M.S. (Matthijs) Berends b730920bb3 Merge branch 'premaster' of https://gitlab.com/msberends/AMR into premaster 2019-07-29 23:48:34 +02:00
dr. M.S. (Matthijs) Berends 240f03a672 (v0.7.1.9015) Remove freq() 2019-07-29 13:33:48 +02:00
dr. M.S. (Matthijs) Berends 7bd29cb8ef codecov update 2019-07-11 16:08:56 +02:00
dr. M.S. (Matthijs) Berends 68230d0712 (v0.7.1.90012) mo_shortname fix 2019-07-10 21:36:51 +02:00
dr. M.S. (Matthijs) Berends a56a87c7db quickfix 2019-07-09 20:26:42 +02:00
dr. M.S. (Matthijs) Berends c57ad26c5b (v0.7.1.9007) mdro update 2019-07-04 15:26:07 +02:00
dr. M.S. (Matthijs) Berends 4ff20af123 (v0.7.1.9006) new rsi calculations, atc class removal 2019-07-02 16:48:52 +02:00
dr. M.S. (Matthijs) Berends 156d550895 (v0.7.1.9005) new rsi calculations, atc class removal 2019-07-01 14:03:15 +02:00
dr. M.S. (Matthijs) Berends 65c6702b21 (v0.7.1.9004) atc class removal 2019-06-27 11:57:45 +02:00
dr. M.S. (Matthijs) Berends b94638d53e (v0.7.0.9014) unit tests 2019-06-22 20:14:06 +02:00
dr. M.S. (Matthijs) Berends c9156c004a (v0.7.0.9013) mo_synonym fix 2019-06-22 14:49:12 +02:00
dr. M.S. (Matthijs) Berends 9c39c35f86 (v0.7.0.9010) mo_synonyms, plot/barplot fixes 2019-06-16 21:42:40 +02:00
dr. M.S. (Matthijs) Berends 254745061c (v0.7.0.9008) T. vaginalis, rsi_df 2019-06-13 14:28:46 +02:00
dr. M.S. (Matthijs) Berends 8f674e19bb (v0.7.0.9005) ab algorithm update 2019-06-11 14:18:25 +02:00
dr. M.S. (Matthijs) Berends ec48f1d83b (v0.7.0.9003) scale fix 2019-06-08 23:50:06 +02:00
dr. M.S. (Matthijs) Berends f02679fb63 (v0.7.0.9001) new pathovars, small fixes 2019-06-07 22:47:37 +02:00
dr. M.S. (Matthijs) Berends 270aa0dd33 v0.7.0 2019-06-03 17:45:22 +02:00
dr. M.S. (Matthijs) Berends bd73988f15 (v0.6.1.9053) prerelease fixes 2019-06-02 19:23:19 +02:00
dr. M.S. (Matthijs) Berends 5608b27c7c (v0.6.1.9051) support staged install 2019-06-01 20:54:56 +02:00
dr. M.S. (Matthijs) Berends 4bac768557 (v0.6.1.9048) data creation fox 2019-05-31 21:01:14 +02:00
dr. M.S. (Matthijs) Berends 0a6580b4eb (v0.6.1.9047) ggplot fix 2019-05-31 20:48:22 +02:00
dr. M.S. (Matthijs) Berends 4ed27c7e7a (v0.6.1.9046) ggplot fix 2019-05-31 20:25:57 +02:00
dr. M.S. (Matthijs) Berends f03f71eced (v0.6.1.9045) age test fix 2019-05-31 14:40:15 +02:00
dr. M.S. (Matthijs) Berends 493ae2ba0c (v0.6.1.9044) first_isolate fix for species 2019-05-31 14:25:11 +02:00
dr. M.S. (Matthijs) Berends 8b5e2b030b added boxplot for (grouped) freq() 2019-05-29 19:56:17 +02:00
dr. M.S. (Matthijs) Berends 27380fa021 fixes for microorganisms.codes 2019-05-28 16:50:40 +02:00
dr. M.S. (Matthijs) Berends 60983a1640 added mdr_tb() 2019-05-23 16:58:59 +02:00
dr. M.S. (Matthijs) Berends 07d26cd485 faster determination of abx 2019-05-20 19:12:41 +02:00
dr. M.S. (Matthijs) Berends 4ca00e1868 speed improvement eucast_rules(), support more old MO codes 2019-05-20 12:00:18 +02:00
dr. M.S. (Matthijs) Berends 4c3cf85a65 ab_info, other bug fixes 2019-05-16 21:20:00 +02:00