438 Commits

Author	SHA1	Message	Date
dr. M.S. (Matthijs) Berends	cd178ee569	(v0.7.1.9072) key_antibiotics() for foreign systems	2019-09-12 15:08:53 +02:00
dr. M.S. (Matthijs) Berends	b5d2a08401	(v0.7.1.9071) p_symbol()	2019-09-03 09:47:39 +02:00
dr. M.S. (Matthijs) Berends	06b6266366	(v0.7.1.9070) na.rm for age(), age_groups()	2019-09-02 15:17:41 +02:00
dr. M.S. (Matthijs) Berends	c7be72f0ce	(v0.7.1.9069) documentation update	2019-09-01 13:16:57 +02:00
dr. M.S. (Matthijs) Berends	88ee1b7268	(v0.7.1.9068) gramstain to freq()	2019-08-30 14:50:56 +02:00
dr. M.S. (Matthijs) Berends	e2b78fa428	(v0.7.1.9066) bug-drug fix	2019-08-27 23:00:00 +02:00
dr. M.S. (Matthijs) Berends	93be16484b	(v0.7.1.9063) septic_patients -> example_isolates	2019-08-27 16:45:42 +02:00
dr. M.S. (Matthijs) Berends	7a6fce4eb8	(v0.7.1.9062) mo/ab assignment improvements	2019-08-26 16:02:03 +02:00
dr. M.S. (Matthijs) Berends	e46cb0399f	(v0.7.1.9059) bug_drug_combinations	2019-08-25 22:53:22 +02:00
dr. M.S. (Matthijs) Berends	04d49a62af	(v0.7.1.9057) get_column_abx() improvement	2019-08-15 17:09:27 +02:00
dr. M.S. (Matthijs) Berends	7108454ba5	(v0.7.1.9055) algorithm improvements	2019-08-13 16:15:08 +02:00
dr. M.S. (Matthijs) Berends	6c4822164c	Merge branch 'premaster'	2019-08-12 19:32:30 +02:00
dr. M.S. (Matthijs) Berends	5f2733349e	(v0.7.1.9038) mo algorithm inprovements	2019-08-12 19:07:15 +02:00
dr. M.S. (Matthijs) Berends	bd252a2984	(v0.7.1.9036) preserve ab/mo classes in subsetting	2019-08-12 14:48:09 +02:00
dr. M.S. (Matthijs) Berends	990709c151	Merge branch 'premaster'	2019-08-11 22:23:18 +02:00
dr. M.S. (Matthijs) Berends	1d423cca89	(v0.7.1.9035) cephalosporins and unit tests	2019-08-11 19:07:26 +02:00
dr. M.S. (Matthijs) Berends	b790030c5f	Merge branch 'premaster'	2019-08-09 09:33:26 +02:00
dr. M.S. (Matthijs) Berends	1ce4b72dd2	(v0.7.1.9031) include_unknown for first_isolate()	2019-08-08 22:39:42 +02:00
dr. M.S. (Matthijs) Berends	43e81bda75	(v0.7.1.9029) unit test ... Merge branch 'premaster' # Conflicts: # tests/testthat/test-resistance_predict.R	2019-08-07 19:22:46 +02:00
dr. M.S. (Matthijs) Berends	f67c739892	(v0.7.1.9029) unit test	2019-08-07 18:56:14 +02:00
dr. M.S. (Matthijs) Berends	e5cc09dbc0	Merge branch 'premaster'	2019-08-07 16:27:37 +02:00
dr. M.S. (Matthijs) Berends	90c874025a	(v0.7.1.9027) tibble printing	2019-08-07 15:37:39 +02:00
dr. M.S. (Matthijs) Berends	3e9a263fc4	Merge branch 'master' of https://gitlab.com/msberends/AMR	2019-08-06 16:16:57 +02:00
dr. M.S. (Matthijs) Berends	3a1f960f89	(v0.7.1.9024) eucast_rules() fix, new MOs	2019-08-06 14:39:22 +02:00
dr. M.S. (Matthijs) Berends	f404db85d4	Merge branch 'premaster' of https://gitlab.com/msberends/AMR into premaster	2019-08-04 13:32:36 +02:00
dr. M.S. (Matthijs) Berends	d6ab3896a1	(v0.7.1.9021) CI fix for resistance_predict	2019-08-04 10:48:41 +02:00
dr. M.S. (Matthijs) Berends	b730920bb3	Merge branch 'premaster' of https://gitlab.com/msberends/AMR into premaster	2019-07-29 23:48:34 +02:00
dr. M.S. (Matthijs) Berends	240f03a672	(v0.7.1.9015) Remove freq()	2019-07-29 13:33:48 +02:00
dr. M.S. (Matthijs) Berends	7bd29cb8ef	codecov update	2019-07-11 16:08:56 +02:00
dr. M.S. (Matthijs) Berends	68230d0712	(v0.7.1.90012) mo_shortname fix	2019-07-10 21:36:51 +02:00
dr. M.S. (Matthijs) Berends	a56a87c7db	quickfix	2019-07-09 20:26:42 +02:00
dr. M.S. (Matthijs) Berends	c57ad26c5b	(v0.7.1.9007) mdro update	2019-07-04 15:26:07 +02:00
dr. M.S. (Matthijs) Berends	4ff20af123	(v0.7.1.9006) new rsi calculations, atc class removal	2019-07-02 16:48:52 +02:00
dr. M.S. (Matthijs) Berends	156d550895	(v0.7.1.9005) new rsi calculations, atc class removal	2019-07-01 14:03:15 +02:00
dr. M.S. (Matthijs) Berends	65c6702b21	(v0.7.1.9004) atc class removal	2019-06-27 11:57:45 +02:00
dr. M.S. (Matthijs) Berends	b94638d53e	(v0.7.0.9014) unit tests	2019-06-22 20:14:06 +02:00
dr. M.S. (Matthijs) Berends	c9156c004a	(v0.7.0.9013) mo_synonym fix	2019-06-22 14:49:12 +02:00
dr. M.S. (Matthijs) Berends	9c39c35f86	(v0.7.0.9010) mo_synonyms, plot/barplot fixes	2019-06-16 21:42:40 +02:00
dr. M.S. (Matthijs) Berends	254745061c	(v0.7.0.9008) T. vaginalis, rsi_df	2019-06-13 14:28:46 +02:00
dr. M.S. (Matthijs) Berends	8f674e19bb	(v0.7.0.9005) ab algorithm update	2019-06-11 14:18:25 +02:00
dr. M.S. (Matthijs) Berends	ec48f1d83b	(v0.7.0.9003) scale fix	2019-06-08 23:50:06 +02:00
dr. M.S. (Matthijs) Berends	f02679fb63	(v0.7.0.9001) new pathovars, small fixes	2019-06-07 22:47:37 +02:00
dr. M.S. (Matthijs) Berends	270aa0dd33	v0.7.0	2019-06-03 17:45:22 +02:00
dr. M.S. (Matthijs) Berends	bd73988f15	(v0.6.1.9053) prerelease fixes	2019-06-02 19:23:19 +02:00
dr. M.S. (Matthijs) Berends	5608b27c7c	(v0.6.1.9051) support staged install	2019-06-01 20:54:56 +02:00
dr. M.S. (Matthijs) Berends	4bac768557	(v0.6.1.9048) data creation fox	2019-05-31 21:01:14 +02:00
dr. M.S. (Matthijs) Berends	0a6580b4eb	(v0.6.1.9047) ggplot fix	2019-05-31 20:48:22 +02:00
dr. M.S. (Matthijs) Berends	4ed27c7e7a	(v0.6.1.9046) ggplot fix	2019-05-31 20:25:57 +02:00
dr. M.S. (Matthijs) Berends	f03f71eced	(v0.6.1.9045) age test fix	2019-05-31 14:40:15 +02:00
dr. M.S. (Matthijs) Berends	493ae2ba0c	(v0.6.1.9044) first_isolate fix for species	2019-05-31 14:25:11 +02:00
dr. M.S. (Matthijs) Berends	8b5e2b030b	added boxplot for (grouped) freq()	2019-05-29 19:56:17 +02:00
dr. M.S. (Matthijs) Berends	27380fa021	fixes for microorganisms.codes	2019-05-28 16:50:40 +02:00
dr. M.S. (Matthijs) Berends	60983a1640	added mdr_tb()	2019-05-23 16:58:59 +02:00
dr. M.S. (Matthijs) Berends	07d26cd485	faster determination of abx	2019-05-20 19:12:41 +02:00
dr. M.S. (Matthijs) Berends	4ca00e1868	speed improvement eucast_rules(), support more old MO codes	2019-05-20 12:00:18 +02:00
dr. M.S. (Matthijs) Berends	4c3cf85a65	ab_info, other bug fixes	2019-05-16 21:20:00 +02:00
dr. M.S. (Matthijs) Berends	f6bf54b37d	documentation fix	2019-05-13 20:16:51 +02:00
dr. M.S. (Matthijs) Berends	cc403169c6	first isolate missing dates fix	2019-05-13 14:56:23 +02:00
dr. M.S. (Matthijs) Berends	c4aa92b4a7	fixed unit test	2019-05-13 13:03:30 +02:00
dr. M.S. (Matthijs) Berends	0dc0715dc6	CI tests	2019-05-13 12:21:57 +02:00
dr. M.S. (Matthijs) Berends	38a4421450	CI tests	2019-05-13 10:10:16 +02:00
dr. M.S. (Matthijs) Berends	68cc7ef0d0	new antibiotics	2019-05-10 16:44:59 +02:00
dr. M.S. (Matthijs) Berends	461eec9bac	cfta streptococci, codecov.yml	2019-04-09 14:59:17 +02:00
dr. M.S. (Matthijs) Berends	fbc9191b13	new EUCAST rules algorithm	2019-04-05 18:47:39 +02:00
dr. M.S. (Matthijs) Berends	713290a9a6	v0.6.1	2019-03-28 22:05:03 +01:00
dr. M.S. (Matthijs) Berends	b25f2d6213	v0.6.1	2019-03-28 21:33:28 +01:00
dr. M.S. (Matthijs) Berends	8a1d384d9c	ci fixes	2019-03-26 15:34:04 +01:00
dr. M.S. (Matthijs) Berends	afd12d5486	ci fixes	2019-03-26 14:42:56 +01:00
dr. M.S. (Matthijs) Berends	29f444543d	added Becker 2019	2019-03-26 14:24:03 +01:00
dr. M.S. (Matthijs) Berends	c6a12266e7	DSMZ data	2019-03-18 14:29:41 +01:00
dr. M.S. (Matthijs) Berends	e18a1f1f17	as.mo improvement	2019-03-15 17:36:42 +01:00
dr. M.S. (Matthijs) Berends	fdffc2791b	memory for as.mo()	2019-03-15 13:57:25 +01:00
dr. M.S. (Matthijs) Berends	504a042fba	uncertainty levels, new WHONET codes	2019-03-12 12:19:27 +01:00
dr. M.S. (Matthijs) Berends	74e0ae21fd	con WHONET, filter ab class	2019-03-05 22:47:42 +01:00
dr. M.S. (Matthijs) Berends	e835525cf6	unknown codes, rsi fix	2019-03-02 22:47:04 +01:00
dr. M.S. (Matthijs) Berends	2565b60024	rlang dependency, new fungi	2019-02-28 13:56:28 +01:00
dr. M.S. (Matthijs) Berends	cf3bdb54c7	global var fix	2019-02-27 19:02:47 +01:00
dr. M.S. (Matthijs) Berends	95c49fdf79	global var fix	2019-02-27 17:39:39 +01:00
dr. M.S. (Matthijs) Berends	54162522bd	age_groups fix	2019-02-27 11:36:12 +01:00
dr. M.S. (Matthijs) Berends	7f155c4e3a	small units test	2019-02-22 00:19:37 +01:00
dr. M.S. (Matthijs) Berends	6c542268be	unit tests	2019-02-21 23:32:30 +01:00
dr. M.S. (Matthijs) Berends	bd2a256969	unit test	2019-02-21 19:15:17 +01:00
dr. M.S. (Matthijs) Berends	68a9a35ed6	algorithm update	2019-02-21 18:55:52 +01:00
dr. M.S. (Matthijs) Berends	c6e57ca456	website update	2019-02-20 14:18:11 +01:00
dr. M.S. (Matthijs) Berends	616c8ab1ae	mo_property	2019-02-20 00:34:38 +01:00
dr. M.S. (Matthijs) Berends	d4f5d282ff	appveyor fix	2019-02-20 00:25:06 +01:00
dr. M.S. (Matthijs) Berends	54f8258f8c	Catalogue of Life, replaces ITIS	2019-02-18 02:33:37 +01:00
dr. M.S. (Matthijs) Berends	ed30312048	mo codes for WHONET	2019-02-08 16:06:54 +01:00
dr. M.S. (Matthijs) Berends	587e00b7be	is.rsi.eligible update	2019-02-04 12:24:07 +01:00
dr. M.S. (Matthijs) Berends	6aae206320	WHONET/EARS-Net support	2019-01-29 00:06:50 +01:00
dr. M.S. (Matthijs) Berends	f6336fdd89	quasiquotation for freq()	2019-01-28 11:20:32 +01:00
dr. M.S. (Matthijs) Berends	f836722269	atc_ functions	2019-01-26 23:22:56 +01:00
dr. M.S. (Matthijs) Berends	f4ff98b470	WHO update, antibiotics update	2019-01-25 13:18:41 +01:00
dr. M.S. (Matthijs) Berends	46dcc7e2e8	set_mo_source	2019-01-21 15:53:01 +01:00
dr. M.S. (Matthijs) Berends	046d195064	resistance predict	2019-01-15 12:45:24 +01:00
dr. M.S. (Matthijs) Berends	5aad26035c	edited g.test	2019-01-12 11:06:58 +01:00
dr. M.S. (Matthijs) Berends	641d866db2	guess_ab_col, benchmarks	2019-01-11 20:37:23 +01:00
dr. M.S. (Matthijs) Berends	0205b6178d	guess_mo deprecation	2019-01-06 16:40:55 +01:00
dr. M.S. (Matthijs) Berends	80ea555663	guess_ab	2019-01-03 23:56:19 +01:00
dr. M.S. (Matthijs) Berends	6b2d464f8c	big website update, licence txt update	2019-01-02 23:24:07 +01:00
dr. M.S. (Matthijs) Berends	2e4d703338	eucast rules fix, 1st isolate fix, website update	2018-12-31 01:48:53 +01:00
dr. M.S. (Matthijs) Berends	48f097c5b2	roxygen2 dep	2018-12-30 09:31:54 +01:00
dr. M.S. (Matthijs) Berends	92a32b62a7	new website, freq updates	2018-12-29 22:24:19 +01:00
dr. M.S. (Matthijs) Berends	0b8084871d	dplyr 0.8.0 support, fixes #7	2018-12-22 22:39:34 +01:00
dr. M.S. (Matthijs) Berends	b937662a97	limits for scale_y_percent - Licence update	2018-12-16 22:45:12 +01:00
dr. M.S. (Matthijs) Berends	2018d5b477	age and age_groups	2018-12-15 22:40:07 +01:00
dr. M.S. (Matthijs) Berends	e4737d3add	date transformation fix for tibbles	2018-12-14 09:31:53 +01:00
dr. M.S. (Matthijs) Berends	7e5fe75a17	small text fixes	2018-12-14 07:48:12 +01:00
dr. M.S. (Matthijs) Berends	01a6d56334	add kingdom to mo_taxonomy	2018-12-10 21:47:25 +01:00
dr. M.S. (Matthijs) Berends	9478ab71be	freq - decimals	2018-12-10 10:13:40 +01:00
dr. M.S. (Matthijs) Berends	8e8a9cd190	AI improvements	2018-12-07 12:04:55 +01:00
dr. M.S. (Matthijs) Berends	87ad6da745	gitlab ci	2018-12-06 16:33:06 +01:00
dr. M.S. (Matthijs) Berends	74a7f4453b	small CI fix	2018-12-06 16:07:06 +01:00
dr. M.S. (Matthijs) Berends	60fe98bbbd	better as.mo handling	2018-12-06 14:36:39 +01:00
dr. M.S. (Matthijs) Berends	31e977937d	fix for as.mo and freq	2018-11-30 12:05:59 +01:00
dr. M.S. (Matthijs) Berends	9ddf6dc530	support A. species for as.mo, cleanup	2018-11-24 20:25:09 +01:00
dr. M.S. (Matthijs) Berends	a8132922af	unit test read.4d, unselecting freq cols	2018-11-19 13:00:22 +01:00
dr. M.S. (Matthijs) Berends	373e0cb32f	unit test fail	2018-11-16 21:57:55 +01:00
dr. M.S. (Matthijs) Berends	4fcc2b409a	MDRO update	2018-11-16 20:50:50 +01:00
dr. M.S. (Matthijs) Berends	6b0f4ffbd4	new kingdom	2018-11-09 13:11:54 +01:00
dr. M.S. (Matthijs) Berends	9be5e0318b	freq: fix na.rm in groups	2018-11-08 16:10:03 +01:00
dr. M.S. (Matthijs) Berends	84e08f516a	grouping var for freq	2018-11-06 16:41:59 +01:00
dr. M.S. (Matthijs) Berends	54368fafef	dont test french	2018-11-05 22:08:54 +01:00
dr. M.S. (Matthijs) Berends	d15bb2ab3f	read_4D	2018-11-05 15:30:49 +01:00
dr. M.S. (Matthijs) Berends	d07e9b904e	new function get_locale	2018-11-05 13:20:32 +01:00
dr. M.S. (Matthijs) Berends	e548a7ad11	equal != identical	2018-11-02 15:04:48 +01:00
dr. M.S. (Matthijs) Berends	d0bc05e5b1	speed improvement is.rsi.eligible	2018-11-02 14:55:29 +01:00
dr. M.S. (Matthijs) Berends	40a159e78d	more unit tests	2018-11-02 10:27:57 +01:00
dr. M.S. (Matthijs) Berends	5476fecc73	eucast update	2018-11-01 20:23:33 +01:00
dr. M.S. (Matthijs) Berends	9cd4ab928a	speed improvement as.mo, freq title	2018-10-31 12:10:49 +01:00
dr. M.S. (Matthijs) Berends	7997de6a6d	mdro and 1st isolate improvements	2018-10-23 11:15:05 +02:00
dr. M.S. (Matthijs) Berends	c2a93b46db	breaks param, tidyr dep change, freq markdown	2018-10-22 12:32:59 +02:00
dr. M.S. (Matthijs) Berends	86b03577a7	fix for as.mo, added also_single_tested	2018-10-19 13:53:31 +02:00
dr. M.S. (Matthijs) Berends	b464dd524a	new verbose	2018-10-19 00:17:03 +02:00
dr. M.S. (Matthijs) Berends	693f64bdbf	new EUCAST rules: clinical breakpoints	2018-10-17 17:32:34 +02:00
dr. M.S. (Matthijs) Berends	d5a41de711	parameter combine_IR	2018-10-16 09:59:31 +02:00
dr. M.S. (Matthijs) Berends	5b5b95a47b	count_all and some fixes	2018-10-12 16:35:18 +02:00
dr. M.S. (Matthijs) Berends	67521394f6	more unit tests	2018-10-09 15:41:44 +02:00
dr. M.S. (Matthijs) Berends	95c9fdc552	CRAN fixes for release 0.4.0 ... https://cran.r-project.org/web/checks/check_results_AMR.html	2018-10-09 13:53:33 +02:00
dr. M.S. (Matthijs) Berends	ed17db0263	renamed year columns to ref	2018-10-01 14:44:40 +02:00
dr. M.S. (Matthijs) Berends	3119a221e5	authors from ITIS, diff for freq	2018-10-01 11:39:43 +02:00
dr. M.S. (Matthijs) Berends	92c9cc2608	diff for freq, fix for mo_shortname	2018-09-29 21:54:32 +02:00
dr. M.S. (Matthijs) Berends	768fe17324	removed clipboard functions as it violated CRAN policies	2018-09-28 16:05:18 +02:00
dr. M.S. (Matthijs) Berends	2b0080995e	speed improvement for as.mo, more old taxonomic names	2018-09-27 23:23:48 +02:00
dr. M.S. (Matthijs) Berends	450992baea	new: 1680 old taxonomic names	2018-09-25 16:44:40 +02:00
dr. M.S. (Matthijs) Berends	da60f27877	travis cant find knitr vignette builder	2018-09-25 00:36:35 +02:00
dr. M.S. (Matthijs) Berends	9c566585b0	first inclusion of ITIS data	2018-09-24 23:33:29 +02:00
dr. M.S. (Matthijs) Berends	df5d82fff3	unit tests	2018-09-17 21:51:21 +02:00
dr. M.S. (Matthijs) Berends	5d80cef338	added taxonomic data from ITIS	2018-09-17 20:53:32 +02:00
dr. M.S. (Matthijs) Berends	7680e4edd8	add shortest and longest to freq for characters	2018-09-17 09:42:09 +02:00
dr. M.S. (Matthijs) Berends	db14781593	add labels_rsi_count	2018-09-16 22:11:17 +02:00
dr. M.S. (Matthijs) Berends	b792a2754e	added prevalence column and alterted as.mo algorith to use it, added ab_name as alias	2018-09-16 16:43:29 +02:00
dr. M.S. (Matthijs) Berends	b0ca49d68d	small improvement for is.rsi.eligible, more unit tests	2018-09-14 11:54:01 +02:00
dr. M.S. (Matthijs) Berends	cb0d74a4f0	support for French and Italian, added quote to freq	2018-09-10 15:45:25 +02:00
dr. M.S. (Matthijs) Berends	b83e6a9380	algoritm improvement, removed all Catabacter except for C. hongkongensis	2018-09-10 11:40:54 +02:00
dr. M.S. (Matthijs) Berends	4816419f0c	AI improvements for microorganisms	2018-09-09 12:11:44 +02:00
dr. M.S. (Matthijs) Berends	936198372e	translate CoNS	2018-09-08 16:24:12 +02:00
dr. M.S. (Matthijs) Berends	26f5be0033	support for portuguese, language determination based on system	2018-09-08 16:06:47 +02:00
dr. M.S. (Matthijs) Berends	de36b0be23	fix for empty values in mo_property	2018-09-05 12:21:27 +02:00
dr. M.S. (Matthijs) Berends	e39a9a8b05	added mo_shortname	2018-09-05 10:51:46 +02:00
dr. M.S. (Matthijs) Berends	b388e3fee7	Support for German and Spanish microorganism properties, cleanup	2018-09-04 11:33:30 +02:00
dr. M.S. (Matthijs) Berends	75fe4d401f	new MOs, cleanup	2018-09-01 21:19:46 +02:00
dr. M.S. (Matthijs) Berends	5965d3c794	replaced bactid by mo	2018-08-31 13:36:19 +02:00
dr. M.S. (Matthijs) Berends	d9e68e0a50	ggplot_rsi example update, more unit tests	2018-08-29 16:25:57 +02:00
dr. M.S. (Matthijs) Berends	029157b3be	163 new trade names, added ab_tradenames	2018-08-29 12:27:37 +02:00
dr. M.S. (Matthijs) Berends	972fc4f6c7	ab_* functions, mo_* functions, 180 new microorganisms, speed improvement for bactid	2018-08-28 13:51:13 +02:00
dr. M.S. (Matthijs) Berends	2acdb1981c	atc and bactid functions, readme update	2018-08-25 22:01:14 +02:00
dr. M.S. (Matthijs) Berends	460dee789f	typo	2018-08-24 14:33:35 +02:00
dr. M.S. (Matthijs) Berends	baaf4cc3e1	few extra tests	2018-08-24 14:18:38 +02:00
dr. M.S. (Matthijs) Berends	a100d07da6	removed ratio, better rsi_calc, update for freq	2018-08-24 11:08:20 +02:00
dr. M.S. (Matthijs) Berends	febd0ca885	geom_rsi - any parameter	2018-08-23 21:27:15 +02:00
dr. M.S. (Matthijs) Berends	8ab93b6688	unit tests	2018-08-23 01:01:50 +02:00
dr. M.S. (Matthijs) Berends	da5379c881	quasiquotation, alpha for geom_rsi	2018-08-23 00:40:36 +02:00
dr. M.S. (Matthijs) Berends	3e87c8f409	count_* functions	2018-08-22 00:02:26 +02:00
dr. M.S. (Matthijs) Berends	b0995362af	testthat error	2018-08-14 12:00:01 +02:00
dr. M.S. (Matthijs) Berends	533342583a	Travis checks	2018-08-14 11:37:40 +02:00
dr. M.S. (Matthijs) Berends	7584c929a5	new AppVeyor environment	2018-08-14 08:57:17 +02:00
dr. M.S. (Matthijs) Berends	59ce1eb1b1	ggplot_rsi improvements	2018-08-13 16:42:37 +02:00
dr. M.S. (Matthijs) Berends	dba06c3295	abname improvement, small fixes	2018-08-13 11:00:53 +02:00
dr. M.S. (Matthijs) Berends	ce2cdb9309	support groups for portion_df, update README	2018-08-12 22:34:03 +02:00
dr. M.S. (Matthijs) Berends	e5d32cafe0	new unit tests for ggplot, small fixes	2018-08-12 17:44:06 +02:00
dr. M.S. (Matthijs) Berends	53fa198e35	new portion functions	2018-08-10 15:01:05 +02:00
dr. M.S. (Matthijs) Berends	ae2433a020	rsi family for resistance analysis	2018-08-03 14:49:29 +02:00
dr. M.S. (Matthijs) Berends	6262315527	Becker classification ... Lancefield classification Added Lancefield groups to `microorganisms` data set	2018-08-02 13:15:45 +02:00
dr. M.S. (Matthijs) Berends	edd2dd09dc	rsi for freq	2018-08-01 22:37:28 +02:00
dr. M.S. (Matthijs) Berends	d8f70a74de	clipboard error	2018-08-01 10:32:24 +02:00
dr. M.S. (Matthijs) Berends	510e8f22aa	more unit tests	2018-07-30 00:57:49 +02:00
dr. M.S. (Matthijs) Berends	d0a115d995	bactid speed improvement	2018-07-30 00:14:06 +02:00
dr. M.S. (Matthijs) Berends	826694323b	new functions R, RI, SI, S	2018-07-29 22:14:51 +02:00
dr. M.S. (Matthijs) Berends	feab1cad6b	small fixes	2018-07-28 09:34:03 +02:00
dr. M.S. (Matthijs) Berends	498e88b5cf	improvement for forecasting resistance	2018-07-26 16:30:42 +02:00
dr. M.S. (Matthijs) Berends	d9e204031d	update to septic_patients, speed improvements	2018-07-25 14:17:04 +02:00
dr. M.S. (Matthijs) Berends	8421638b60	new class bactid	2018-07-23 14:14:03 +02:00
dr. M.S. (Matthijs) Berends	9920ac8a5c	fix for keyab, more examples	2018-07-23 10:35:39 +02:00
dr. M.S. (Matthijs) Berends	0d64c166f0	keyab fixes	2018-07-17 19:51:09 +02:00
dr. M.S. (Matthijs) Berends	5cb9c541f8	new algorithm key abs	2018-07-17 13:02:05 +02:00
dr. M.S. (Matthijs) Berends	967ee86757	add unit tests	2018-07-17 11:18:36 +02:00
dr. M.S. (Matthijs) Berends	a5a4354651	speed improvements	2018-07-17 10:32:26 +02:00
dr. M.S. (Matthijs) Berends	6eaf33baf3	speed improvements	2018-07-15 22:56:41 +02:00
dr. M.S. (Matthijs) Berends	b6655f6454	Welcome C++!	2018-07-13 17:23:46 +02:00
dr. M.S. (Matthijs) Berends	a28289562a	remove print function, out of scope	2018-07-11 20:12:19 +02:00
dr. M.S. (Matthijs) Berends	e3e10c2e88	fix for macOS and older tidyr versions	2018-07-11 12:34:02 +02:00
dr. M.S. (Matthijs) Berends	eca406b18b	travis build fails for macos	2018-07-11 11:46:06 +02:00
dr. M.S. (Matthijs) Berends	f63414d519	new g.test, extra unit tests	2018-07-10 12:27:07 +02:00
dr. M.S. (Matthijs) Berends	fc30d3fb13	freq: support for table	2018-07-09 14:02:58 +02:00
dr. M.S. (Matthijs) Berends	14b990d769	kurtosis, skewness, start with ML	2018-07-08 22:14:55 +02:00
dr. M.S. (Matthijs) Berends	34ee0247ac	addins and small improvements to microorganisms dataset	2018-07-04 17:20:03 +02:00
dr. M.S. (Matthijs) Berends	3d0d21f322	rename vector2ratio to ratio	2018-07-02 11:14:20 +02:00
dr. M.S. (Matthijs) Berends	a1acb2f3ac	extra unit tests	2018-07-02 09:34:20 +02:00
dr. M.S. (Matthijs) Berends	3527894b49	new g.test() and edited freq()	2018-07-01 21:40:37 +02:00
dr. M.S. (Matthijs) Berends	6ee713cec1	move tbl_parse_guess	2018-06-29 08:56:03 +02:00
dr. M.S. (Matthijs) Berends	649a8025aa	add clipboard functions again	2018-06-27 15:54:56 +02:00
dr. M.S. (Matthijs) Berends	a9bd5472d0	top_freq	2018-06-20 14:47:37 +02:00
dr. M.S. (Matthijs) Berends	4a027f3c34	extra unit tests, add row.names to freq	2018-06-19 15:20:14 +02:00
dr. M.S. (Matthijs) Berends	bdc860e29c	atc_groups	2018-06-19 10:05:38 +02:00
dr. M.S. (Matthijs) Berends	0a5898b17d	fix for printing tibbles, improve guess_bactid	2018-06-08 12:06:54 +02:00
uscloud	dcc26dd942	Update freq function	2018-05-22 16:34:22 +02:00
dr. M.S. (Matthijs) Berends	f05e7178cb	added vignette of freq	2018-05-09 11:44:46 +02:00
dr. M.S. (Matthijs) Berends	c0fc82c794	Added function `n_rsi`	2018-05-02 14:56:25 +02:00
dr. M.S. (Matthijs) Berends	19ccc51f40	remove clipboard functions	2018-05-01 09:36:45 +02:00
dr. M.S. (Matthijs) Berends	6fa93fc286	fix clipboard check	2018-04-30 16:54:37 +02:00
dr. M.S. (Matthijs) Berends	8fe70d5652	Fix Latex PDF error	2018-04-30 16:24:11 +02:00
dr. M.S. (Matthijs) Berends	970e3ed7f1	EUCAST rules for MDRO	2018-04-25 15:33:58 +02:00
dr. M.S. (Matthijs) Berends	0b22ddef8e	more unit tests	2018-04-20 13:45:34 +02:00
dr. M.S. (Matthijs) Berends	82fec5cc51	Try to support older R versions	2018-04-19 14:10:57 +02:00
dr. M.S. (Matthijs) Berends	e7396b8f39	Try to support older R versions	2018-04-19 12:50:23 +02:00
dr. M.S. (Matthijs) Berends	4b5530ed64	Try to support older R versions	2018-04-18 15:19:00 +02:00
dr. M.S. (Matthijs) Berends	2509e2413d	MDRO, freq tables, new print format for tibbles	2018-04-18 12:24:54 +02:00
dr. M.S. (Matthijs) Berends	3165c50d06	more MOs	2018-04-03 16:07:32 +02:00
dr. M.S. (Matthijs) Berends	4a47e59e6f	fortify code with more tests	2018-04-03 11:08:31 +02:00
dr. M.S. (Matthijs) Berends	972e923484	testthat for macOS	2018-04-02 16:21:03 +02:00
dr. M.S. (Matthijs) Berends	07bdd61241	update dependencies	2018-04-02 16:05:09 +02:00
dr. M.S. (Matthijs) Berends	c182a9673d	fix clipboard on linux	2018-04-02 11:11:21 +02:00
MS Berends	e2a5202b69	Update test-clipboard.R	2018-03-29 14:47:52 +02:00
MS Berends	258e080756	Update test-clipboard.R	2018-03-29 14:26:26 +02:00
MS Berends	339b445a30	Update test-clipboard.R	2018-03-29 13:12:49 +02:00
dr. M.S. (Matthijs) Berends	1b3cc41c08	fix tests	2018-03-27 17:58:46 +02:00
dr. M.S. (Matthijs) Berends	6f7730dcaa	add tests using testthat	2018-03-27 17:43:42 +02:00