|
|
ddb23b6e73
|
(v2.1.1.9071) update veterinary SIR interpretation, add only_fungi
|
2024-09-19 11:44:56 +02:00 |
|
|
|
573c0346ed
|
(v2.1.1.9070) fix for mo_current mo (no-verify)
|
2024-07-19 18:05:49 +02:00 |
|
|
|
7258a491b9
|
(v2.1.1.9068) fix for mo_url() and as.mo() for synonyms
|
2024-07-17 14:29:55 +02:00 |
|
|
|
7f344836ea
|
(v2.1.1.9064) unit tests
|
2024-07-16 15:55:58 +02:00 |
|
|
|
640888f408
|
(v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update
|
2024-07-16 14:53:17 +02:00 |
|
|
|
9bf7584d58
|
(v2.1.1.9049) new 2024 breakpoints, add AMO, set NI instead of N
|
2024-06-14 22:39:01 +02:00 |
|
|
|
0d8a91db49
|
rename pre-commit hook to pre-commit checks (no-check)
|
2024-04-23 10:55:48 +02:00 |
|
|
|
7be4dabbc0
|
support veterinary MIC/disk translation
|
2024-02-24 15:16:52 +01:00 |
|
|
|
ea2a4652e9
|
mouse-hover fixes
|
2023-07-12 15:27:43 +01:00 |
|
|
|
0c46f61260
|
MO group fixes
|
2023-07-12 15:04:48 +01:00 |
|
|
|
66eeeb4b88
|
cleanup
|
2023-07-11 14:29:40 +02:00 |
|
|
|
a4e2e25e3f
|
reftbl in plots, speedup for as.sir() and mo_validate
|
2023-07-10 16:43:46 +02:00 |
|
|
|
70c601ca11
|
breakpoints UTI interpretation fix
|
2023-07-10 13:41:52 +02:00 |
|
|
|
acb534102b
|
new species groups, updated clinical breakpoints
|
2023-07-08 17:30:05 +02:00 |
|
|
|
2d97cca6d9
|
fix reference_df endless loop
|
2023-06-26 13:52:02 +02:00 |
|
|
|
1d9ee39cc7
|
fix for mo codes
|
2023-06-22 15:24:18 +02:00 |
|
Dr. Matthijs Berends
|
f065945d7b
|
Update clinical breakpoints and fix some as.mo() bugs (#117)
* Updates clinical breakpoints EUCAST/CLSI 2023, fixes #102, fixes #112, fixes #113, fixes #114, fixes #115
* docs
* implement ecoffs
* unit tests
|
2023-06-22 15:10:59 +02:00 |
|
|
|
9591688811
|
documentation update
|
2023-05-27 10:39:22 +02:00 |
|
|
|
766db4e21f
|
as.mo fix
|
2023-05-26 19:20:21 +02:00 |
|
|
|
c6135d2082
|
updated microorganism codes
|
2023-05-26 16:10:01 +02:00 |
|
|
|
0bcf55d3b6
|
improve as.mo()
|
2023-05-24 15:55:53 +02:00 |
|
|
|
91fa73dedf
|
add oxygen tolerance
|
2023-05-11 21:56:27 +02:00 |
|
|
|
bf08d136a0
|
fix coercing NA to custom codes, fixes #107
|
2023-05-08 13:04:18 +02:00 |
|
|
|
cabffb22fd
|
anaerobic codes
|
2023-04-17 11:26:19 +02:00 |
|
|
|
1a02d302d4
|
Fix translatable strings
|
2023-04-15 09:32:13 +02:00 |
|
|
|
147f9112e9
|
Fix some WHONET codes
|
2023-04-14 11:12:26 +02:00 |
|
|
|
80cfc503c2
|
check for 2.0
|
2023-03-12 13:02:37 +01:00 |
|
|
|
262598b8d7
|
support for old rsi arguments
|
2023-03-11 14:24:34 +01:00 |
|
|
|
4416394e10
|
website update
|
2023-02-26 21:26:58 +01:00 |
|
|
|
dad25302f2
|
make rsi work in more cases, documentation update
|
2023-02-22 14:38:57 +01:00 |
|
|
|
45a9697c84
|
unit tests
|
2023-02-12 17:10:48 +01:00 |
|
|
|
c740967cf2
|
fix for binding rows
|
2023-02-12 11:20:14 +01:00 |
|
|
|
c51fb24363
|
pm_bind_rows
|
2023-02-11 22:28:48 +01:00 |
|
|
|
2007c3eef3
|
bind_rows
|
2023-02-10 17:09:48 +01:00 |
|
|
|
03294c7901
|
fix for Salmonella group A, unit tests
|
2023-02-10 16:47:25 +01:00 |
|
|
|
bc434db835
|
bring back antibiogram(), without deps
|
2023-02-10 16:18:00 +01:00 |
|
|
|
1a0dc4bf46
|
revert back to pre-antibiogram
|
2023-02-09 13:07:39 +01:00 |
|
|
|
9e99e66f01
|
use dplyr where available, new antibiogram() for WISCA, fixed Salmonella Typhi/Paratyphi
|
2023-02-06 11:57:22 +01:00 |
|
|
|
4b133d4c96
|
unit tests
|
2023-01-30 17:24:03 +01:00 |
|
|
|
89a577805f
|
prelim fix for g.test
|
2023-01-30 12:26:48 +01:00 |
|
|
|
eef00069fd
|
add all options to documentation
|
2023-01-23 20:07:57 +01:00 |
|
|
|
19fd0ef121
|
sort sir history
|
2023-01-23 15:01:21 +01:00 |
|
Dr. Matthijs Berends
|
98e62c9af2
|
Replace RSI with SIR
|
2023-01-21 23:47:20 +01:00 |
|
|
|
b94bc6c67b
|
adding mo fixes
|
2023-01-14 19:50:25 +01:00 |
|
|
|
ca79068604
|
Fix for adding MO's
|
2023-01-14 17:10:10 +01:00 |
|
|
|
1029aa2fdc
|
algorithm improvement
|
2023-01-07 14:53:14 +01:00 |
|
|
|
2375bfdcb5
|
documentation
|
2023-01-07 01:51:19 +01:00 |
|
|
|
61c0bdb7af
|
documentation
|
2022-12-28 15:04:59 +01:00 |
|
|
|
ba3b237bdf
|
custom mo update
|
2022-12-28 14:20:10 +01:00 |
|
|
|
f619fb683b
|
support new mo codes
|
2022-12-27 15:16:15 +01:00 |
|
