Dr. Matthijs Berends
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f065945d7b
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Update clinical breakpoints and fix some `as.mo()` bugs (#117)
* Updates clinical breakpoints EUCAST/CLSI 2023, fixes #102, fixes #112, fixes #113, fixes #114, fixes #115
* docs
* implement ecoffs
* unit tests
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2023-06-22 15:10:59 +02:00 |
 dr. M.S. (Matthijs) Berends
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9591688811
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documentation update
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2023-05-27 10:39:22 +02:00 |
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dr. M.S. (Matthijs) Berends
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e1966503ee
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unit testing R4.3
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2023-05-26 20:37:00 +02:00 |
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dr. M.S. (Matthijs) Berends
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8179092c57
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add XPT files for SAS software
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2023-05-12 10:07:55 +02:00 |
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dr. M.S. (Matthijs) Berends
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91fa73dedf
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add oxygen tolerance
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2023-05-11 21:56:27 +02:00 |
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dr. M.S. (Matthijs) Berends
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9de19fdc49
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documentation
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2023-04-21 10:07:25 +02:00 |
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dr. M.S. (Matthijs) Berends
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ad3061c754
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unit test
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2023-04-15 10:32:37 +02:00 |
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dr. M.S. (Matthijs) Berends
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1a02d302d4
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Fix translatable strings
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2023-04-15 09:32:13 +02:00 |
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dr. M.S. (Matthijs) Berends
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1d3d7d40bc
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get episode unit tests
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2023-02-24 19:54:56 +01:00 |
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dr. M.S. (Matthijs) Berends
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8d902410f9
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unit tests
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2023-02-18 14:56:06 +01:00 |
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dr. M.S. (Matthijs) Berends
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8d37c75860
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unit tests
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2023-02-14 15:59:40 +01:00 |
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dr. M.S. (Matthijs) Berends
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a4cd38c433
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fix for R < 3.2, `expect_warning()` on hold
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2023-02-14 10:41:01 +01:00 |
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dr. M.S. (Matthijs) Berends
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b6d2b1398d
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Fix for `antibiogram()` in R <=3.4
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2023-02-13 10:21:43 +01:00 |
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dr. M.S. (Matthijs) Berends
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45a9697c84
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unit tests
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2023-02-12 17:10:48 +01:00 |
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dr. M.S. (Matthijs) Berends
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03294c7901
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fix for Salmonella group A, unit tests
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2023-02-10 16:47:25 +01:00 |
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dr. M.S. (Matthijs) Berends
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bc434db835
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bring back `antibiogram()`, without deps
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2023-02-10 16:18:00 +01:00 |
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dr. M.S. (Matthijs) Berends
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70a7ba0206
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fix first isolate
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2023-02-10 13:13:17 +01:00 |
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dr. M.S. (Matthijs) Berends
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1a0dc4bf46
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revert back to pre-antibiogram
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2023-02-09 13:07:39 +01:00 |
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dr. M.S. (Matthijs) Berends
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822e9de82c
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pm update, unit test fix?
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2023-02-08 13:48:06 +01:00 |
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dr. M.S. (Matthijs) Berends
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75a4c1ef3e
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fixes2
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2023-02-06 14:34:38 +01:00 |
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dr. M.S. (Matthijs) Berends
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9e99e66f01
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use dplyr where available, new `antibiogram()` for WISCA, fixed Salmonella Typhi/Paratyphi
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2023-02-06 11:57:22 +01:00 |
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dr. M.S. (Matthijs) Berends
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4b133d4c96
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unit tests
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2023-01-30 17:24:03 +01:00 |
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dr. M.S. (Matthijs) Berends
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126afb01a4
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unit tests 2
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2023-01-24 16:31:00 +01:00 |
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dr. M.S. (Matthijs) Berends
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c0d8888ab7
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unit tests
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2023-01-24 16:09:48 +01:00 |
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dr. M.S. (Matthijs) Berends
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7b00b4f34a
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unit tests
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2023-01-24 14:52:15 +01:00 |
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dr. M.S. (Matthijs) Berends
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830c67f1bf
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documentation, unit tests
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2023-01-24 10:20:27 +01:00 |
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Dr. Matthijs Berends
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98e62c9af2
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Replace RSI with SIR
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2023-01-21 23:47:20 +01:00 |
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dr. M.S. (Matthijs) Berends
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24b12024ce
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unit test fix
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2023-01-20 09:45:03 +01:00 |
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dr. M.S. (Matthijs) Berends
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b94bc6c67b
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adding mo fixes
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2023-01-14 19:50:25 +01:00 |
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dr. M.S. (Matthijs) Berends
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cf16bc7de1
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unit tests
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2023-01-06 13:45:20 +01:00 |
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dr. M.S. (Matthijs) Berends
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86e28bafce
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add mo_pathogenicity
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2023-01-06 13:35:37 +01:00 |
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dr. M.S. (Matthijs) Berends
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51c0f0814e
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new setup unit tests
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2023-01-05 15:03:18 +01:00 |
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dr. M.S. (Matthijs) Berends
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f619fb683b
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support new mo codes
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2022-12-27 15:16:15 +01:00 |
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dr. M.S. (Matthijs) Berends
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e493248ea5
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unit test and news file
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2022-12-21 09:12:53 +01:00 |
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dr. M.S. (Matthijs) Berends
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4c42a43f7d
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fixes
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2022-12-20 22:41:39 +01:00 |
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dr. M.S. (Matthijs) Berends
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6f4bb603ec
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unit tests
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2022-12-20 22:18:50 +01:00 |
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dr. M.S. (Matthijs) Berends
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23fe427cbc
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Fixes for Salmonella
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2022-12-17 14:31:33 +01:00 |
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dr. M.S. (Matthijs) Berends
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e7d7b94b3e
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no obligatory note on startup
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2022-12-09 15:10:49 +01:00 |
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dr. M.S. (Matthijs) Berends
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510140fc55
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Updated `mo_gramstain()` to reflect current taxonomy, fixes #83
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2022-12-09 10:30:25 +01:00 |
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dr. M.S. (Matthijs) Berends
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31fb81c382
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revised `as.rsi()`, fix for `mdro()`
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2022-11-24 20:29:00 +01:00 |
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dr. M.S. (Matthijs) Berends
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05d536ebb7
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complexes
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2022-11-17 15:23:29 +01:00 |
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Dr. Matthijs Berends
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496c08d851
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Implement extensive support for antiviral agents support (#77)
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2022-11-13 08:46:10 +01:00 |
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dr. M.S. (Matthijs) Berends
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d20caae54b
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cleanup
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2022-10-31 13:25:41 +01:00 |
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dr. M.S. (Matthijs) Berends
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796b972f8a
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extend vctrs support
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2022-10-31 11:19:06 +01:00 |
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dr. M.S. (Matthijs) Berends
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9444ed6d1d
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fix antibiotics error
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2022-10-30 21:05:46 +01:00 |
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dr. M.S. (Matthijs) Berends
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3d9faf89cf
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ATC and DDD update
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2022-10-29 19:01:23 +02:00 |
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dr. M.S. (Matthijs) Berends
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6ad7857d39
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fix missing R breakpoints
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2022-10-29 14:15:23 +02:00 |
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dr. M.S. (Matthijs) Berends
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d10651eb26
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cleanup
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2022-10-22 10:20:09 +02:00 |
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dr. M.S. (Matthijs) Berends
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aa2c0639d0
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add confidence intervals (fixed #70), remove `combine_IR`
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2022-10-20 16:08:01 +02:00 |
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dr. M.S. (Matthijs) Berends
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85e2fbe4a3
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remove warnings from unit tests
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2022-10-19 11:47:57 +02:00 |