 dr. M.S. (Matthijs) Berends
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f7dd890b79
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fixes
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2023-02-06 12:38:52 +01:00 |
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dr. M.S. (Matthijs) Berends
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9e99e66f01
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use dplyr where available, new `antibiogram()` for WISCA, fixed Salmonella Typhi/Paratyphi
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2023-02-06 11:57:22 +01:00 |
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dr. M.S. (Matthijs) Berends
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4b133d4c96
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unit tests
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2023-01-30 17:24:03 +01:00 |
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dr. M.S. (Matthijs) Berends
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89a577805f
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prelim fix for g.test
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2023-01-30 12:26:48 +01:00 |
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dr. M.S. (Matthijs) Berends
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126afb01a4
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unit tests 2
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2023-01-24 16:31:00 +01:00 |
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dr. M.S. (Matthijs) Berends
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c0d8888ab7
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unit tests
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2023-01-24 16:09:48 +01:00 |
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dr. M.S. (Matthijs) Berends
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7b00b4f34a
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unit tests
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2023-01-24 14:52:15 +01:00 |
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dr. M.S. (Matthijs) Berends
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830c67f1bf
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documentation, unit tests
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2023-01-24 10:20:27 +01:00 |
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dr. M.S. (Matthijs) Berends
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eef00069fd
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add all options to documentation
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2023-01-23 20:07:57 +01:00 |
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dr. M.S. (Matthijs) Berends
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19fd0ef121
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sort sir history
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2023-01-23 15:01:21 +01:00 |
Dr. Matthijs Berends
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af139a3c82
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unit test fix for old R versions
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2023-01-21 23:53:31 +01:00 |
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Dr. Matthijs Berends
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98e62c9af2
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Replace RSI with SIR
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2023-01-21 23:47:20 +01:00 |
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dr. M.S. (Matthijs) Berends
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24b12024ce
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unit test fix
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2023-01-20 09:45:03 +01:00 |
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dr. M.S. (Matthijs) Berends
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593d740b84
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documentation, file permissions
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2023-01-19 12:54:53 +01:00 |
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dr. M.S. (Matthijs) Berends
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b94bc6c67b
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adding mo fixes
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2023-01-14 19:50:25 +01:00 |
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dr. M.S. (Matthijs) Berends
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ca79068604
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Fix for adding MO's
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2023-01-14 17:10:10 +01:00 |
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dr. M.S. (Matthijs) Berends
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33f269e2f4
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contrib update
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2023-01-12 23:16:05 +01:00 |
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dr. M.S. (Matthijs) Berends
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51906d6f97
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no overwriting taxonomy when adding microorganisms
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2023-01-12 11:33:28 +01:00 |
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dr. M.S. (Matthijs) Berends
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1029aa2fdc
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algorithm improvement
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2023-01-07 14:53:14 +01:00 |
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dr. M.S. (Matthijs) Berends
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08fe5a88c0
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documentation
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2023-01-07 01:54:46 +01:00 |
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dr. M.S. (Matthijs) Berends
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2375bfdcb5
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documentation
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2023-01-07 01:51:19 +01:00 |
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dr. M.S. (Matthijs) Berends
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84ed8c32bb
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documentation
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2023-01-06 19:21:04 +01:00 |
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dr. M.S. (Matthijs) Berends
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cf16bc7de1
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unit tests
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2023-01-06 13:45:20 +01:00 |
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dr. M.S. (Matthijs) Berends
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86e28bafce
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add mo_pathogenicity
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2023-01-06 13:35:37 +01:00 |
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dr. M.S. (Matthijs) Berends
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4801a6067e
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unit tests
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2023-01-06 11:22:02 +01:00 |
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dr. M.S. (Matthijs) Berends
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8a0a0d4682
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unit tests
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2023-01-06 10:08:25 +01:00 |
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dr. M.S. (Matthijs) Berends
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268ec31d92
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unit tests
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2023-01-05 18:21:48 +01:00 |
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dr. M.S. (Matthijs) Berends
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5361c0b2a0
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limit GitHub runners
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2023-01-05 15:41:07 +01:00 |
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dr. M.S. (Matthijs) Berends
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51c0f0814e
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new setup unit tests
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2023-01-05 15:03:18 +01:00 |
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dr. M.S. (Matthijs) Berends
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a98d0d75ea
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styler dep
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2023-01-05 14:46:44 +01:00 |
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dr. M.S. (Matthijs) Berends
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a0ee86536a
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unit tests
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2023-01-05 14:43:18 +01:00 |
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dr. M.S. (Matthijs) Berends
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77d9cf1936
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documentation
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2022-12-30 13:02:37 +01:00 |
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dr. M.S. (Matthijs) Berends
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e4ea96cbf9
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fix for R < 3.4
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2022-12-30 12:57:27 +01:00 |
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dr. M.S. (Matthijs) Berends
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1db74e86cd
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good start-up practice
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2022-12-29 16:23:57 +01:00 |
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dr. M.S. (Matthijs) Berends
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61c0bdb7af
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documentation
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2022-12-28 15:04:59 +01:00 |
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dr. M.S. (Matthijs) Berends
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ba3b237bdf
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custom mo update
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2022-12-28 14:20:10 +01:00 |
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dr. M.S. (Matthijs) Berends
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fe09e9252b
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custom mo update
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2022-12-27 16:03:03 +01:00 |
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dr. M.S. (Matthijs) Berends
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f619fb683b
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support new mo codes
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2022-12-27 15:16:15 +01:00 |
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dr. M.S. (Matthijs) Berends
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e493248ea5
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unit test and news file
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2022-12-21 09:12:53 +01:00 |
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dr. M.S. (Matthijs) Berends
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4c42a43f7d
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fixes
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2022-12-20 22:41:39 +01:00 |
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dr. M.S. (Matthijs) Berends
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6f4bb603ec
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unit tests
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2022-12-20 22:18:50 +01:00 |
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dr. M.S. (Matthijs) Berends
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f0a2cdbf5e
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update mo algorithm
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2022-12-20 16:14:04 +01:00 |
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dr. M.S. (Matthijs) Berends
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b1b7534c78
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incorporate Bartlett et al (2022)
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2022-12-19 15:32:41 +01:00 |
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dr. M.S. (Matthijs) Berends
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23fe427cbc
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Fixes for Salmonella
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2022-12-17 14:31:33 +01:00 |
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dr. M.S. (Matthijs) Berends
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5f3a7694aa
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microorganisms update, added Salmonella groups
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2022-12-16 16:10:43 +01:00 |
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dr. M.S. (Matthijs) Berends
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8da2467209
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updated taxonomy
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2022-12-12 00:14:56 +01:00 |
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dr. M.S. (Matthijs) Berends
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eed1c14b96
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website update
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2022-12-11 11:44:29 +01:00 |
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dr. M.S. (Matthijs) Berends
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b1ead9c0fe
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doc update
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2022-12-10 10:09:57 +01:00 |
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dr. M.S. (Matthijs) Berends
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e7d7b94b3e
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no obligatory note on startup
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2022-12-09 15:10:49 +01:00 |
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dr. M.S. (Matthijs) Berends
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56dad34e68
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update prevalence with new phyla
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2022-12-09 13:37:08 +01:00 |