 dr. M.S. (Matthijs) Berends
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270aa0dd33
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v0.7.0
|
2019-06-03 17:45:22 +02:00 |
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dr. M.S. (Matthijs) Berends
|
bd73988f15
|
(v0.6.1.9053) prerelease fixes
|
2019-06-02 19:23:19 +02:00 |
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dr. M.S. (Matthijs) Berends
|
8de0495008
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(v0.6.1.9052) website update
|
2019-06-01 21:28:18 +02:00 |
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dr. M.S. (Matthijs) Berends
|
2667fff8a7
|
(v0.6.1.9050) support staged install
|
2019-06-01 20:40:49 +02:00 |
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dr. M.S. (Matthijs) Berends
|
4ed27c7e7a
|
(v0.6.1.9046) ggplot fix
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2019-05-31 20:25:57 +02:00 |
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dr. M.S. (Matthijs) Berends
|
493ae2ba0c
|
(v0.6.1.9044) first_isolate fix for species
|
2019-05-31 14:25:11 +02:00 |
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dr. M.S. (Matthijs) Berends
|
8b5e2b030b
|
added boxplot for (grouped) freq()
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2019-05-29 19:56:17 +02:00 |
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dr. M.S. (Matthijs) Berends
|
27380fa021
|
fixes for microorganisms.codes
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2019-05-28 16:50:40 +02:00 |
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dr. M.S. (Matthijs) Berends
|
60983a1640
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added mdr_tb()
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2019-05-23 16:58:59 +02:00 |
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dr. M.S. (Matthijs) Berends
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f6bf54b37d
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documentation fix
|
2019-05-13 20:16:51 +02:00 |
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dr. M.S. (Matthijs) Berends
|
cc403169c6
|
first isolate missing dates fix
|
2019-05-13 14:56:23 +02:00 |
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dr. M.S. (Matthijs) Berends
|
0dc0715dc6
|
CI tests
|
2019-05-13 12:21:57 +02:00 |
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dr. M.S. (Matthijs) Berends
|
38a4421450
|
CI tests
|
2019-05-13 10:10:16 +02:00 |
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dr. M.S. (Matthijs) Berends
|
68cc7ef0d0
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new antibiotics
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2019-05-10 16:44:59 +02:00 |
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dr. M.S. (Matthijs) Berends
|
73f1ee1159
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freq/age fix
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2019-04-11 00:54:48 +02:00 |
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dr. M.S. (Matthijs) Berends
|
cffb7787d8
|
cfta streptococci
|
2019-04-09 10:34:40 +02:00 |
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dr. M.S. (Matthijs) Berends
|
13f85ac80f
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small news update
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2019-04-07 09:31:11 +02:00 |
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dr. M.S. (Matthijs) Berends
|
501f5db020
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prevent staged install
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2019-04-06 11:09:06 +02:00 |
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dr. M.S. (Matthijs) Berends
|
fbc9191b13
|
new EUCAST rules algorithm
|
2019-04-05 18:47:39 +02:00 |
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dr. M.S. (Matthijs) Berends
|
248e508e9b
|
CI - test also on r-devel
|
2019-03-29 14:34:39 +01:00 |
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dr. M.S. (Matthijs) Berends
|
b25f2d6213
|
v0.6.1
|
2019-03-28 21:33:28 +01:00 |
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dr. M.S. (Matthijs) Berends
|
429814c29b
|
v0.6.0
|
2019-03-27 11:22:36 +01:00 |
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dr. M.S. (Matthijs) Berends
|
fdffc2791b
|
memory for as.mo()
|
2019-03-15 13:57:25 +01:00 |
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dr. M.S. (Matthijs) Berends
|
504a042fba
|
uncertainty levels, new WHONET codes
|
2019-03-12 12:19:27 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
0c0c6e289b
|
small as.mo fix
|
2019-03-06 14:39:02 +01:00 |
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dr. M.S. (Matthijs) Berends
|
5c7a061a5d
|
filter_ab_class fix
|
2019-03-06 09:32:48 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
e835525cf6
|
unknown codes, rsi fix
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2019-03-02 22:47:04 +01:00 |
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dr. M.S. (Matthijs) Berends
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2565b60024
|
rlang dependency, new fungi
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2019-02-28 13:56:28 +01:00 |
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dr. M.S. (Matthijs) Berends
|
f9ded23023
|
as.mo improvement
|
2019-02-26 12:33:26 +01:00 |
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dr. M.S. (Matthijs) Berends
|
41ad7a22c8
|
mo_rank mo_url, added Tremellales
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2019-02-22 22:12:10 +01:00 |
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dr. M.S. (Matthijs) Berends
|
6c542268be
|
unit tests
|
2019-02-21 23:32:30 +01:00 |
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dr. M.S. (Matthijs) Berends
|
fb1fc3686c
|
Catalogue of life
|
2019-02-20 00:04:48 +01:00 |
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dr. M.S. (Matthijs) Berends
|
54f8258f8c
|
Catalogue of Life, replaces ITIS
|
2019-02-18 02:33:37 +01:00 |
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dr. M.S. (Matthijs) Berends
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c56b179857
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as.rsi warning, site update
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2019-02-09 22:16:24 +01:00 |
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dr. M.S. (Matthijs) Berends
|
ed30312048
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mo codes for WHONET
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2019-02-08 16:06:54 +01:00 |
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dr. M.S. (Matthijs) Berends
|
587e00b7be
|
is.rsi.eligible update
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2019-02-04 12:24:07 +01:00 |
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dr. M.S. (Matthijs) Berends
|
0b3dc0231f
|
freq fix
|
2019-01-30 16:00:55 +01:00 |
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dr. M.S. (Matthijs) Berends
|
6aae206320
|
WHONET/EARS-Net support
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2019-01-29 00:06:50 +01:00 |
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dr. M.S. (Matthijs) Berends
|
f6336fdd89
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quasiquotation for freq()
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2019-01-28 11:20:32 +01:00 |
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dr. M.S. (Matthijs) Berends
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18b75356a9
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re-add atc_ddd and atc_groups
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2019-01-27 13:33:43 +01:00 |
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dr. M.S. (Matthijs) Berends
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f836722269
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atc_ functions
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2019-01-26 23:22:56 +01:00 |
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dr. M.S. (Matthijs) Berends
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f4ff98b470
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WHO update, antibiotics update
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2019-01-25 13:18:41 +01:00 |
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dr. M.S. (Matthijs) Berends
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9529d097b6
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as.mo
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2019-01-21 21:24:40 +01:00 |
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dr. M.S. (Matthijs) Berends
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46dcc7e2e8
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set_mo_source
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2019-01-21 15:53:01 +01:00 |
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dr. M.S. (Matthijs) Berends
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c6c3088e9f
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select() fix for freq
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2019-01-17 12:08:04 +01:00 |
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dr. M.S. (Matthijs) Berends
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046d195064
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resistance predict
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2019-01-15 12:45:24 +01:00 |
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dr. M.S. (Matthijs) Berends
|
3661df7365
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direct warning if failing as.mo
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2019-01-12 16:45:20 +01:00 |
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dr. M.S. (Matthijs) Berends
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641d866db2
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guess_ab_col, benchmarks
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2019-01-11 20:37:23 +01:00 |
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dr. M.S. (Matthijs) Berends
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193a2d2863
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EUCAST update, as.mo bugfix for empty vlaues
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2019-01-08 16:23:45 +01:00 |
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dr. M.S. (Matthijs) Berends
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0205b6178d
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guess_mo deprecation
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2019-01-06 16:40:55 +01:00 |
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dr. M.S. (Matthijs) Berends
|
2c798547bf
|
language
|
2019-01-05 21:40:04 +01:00 |
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dr. M.S. (Matthijs) Berends
|
80ea555663
|
guess_ab
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2019-01-03 23:56:19 +01:00 |
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dr. M.S. (Matthijs) Berends
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6b2d464f8c
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big website update, licence txt update
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2019-01-02 23:24:07 +01:00 |
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dr. M.S. (Matthijs) Berends
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2e4d703338
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eucast rules fix, 1st isolate fix, website update
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2018-12-31 01:48:53 +01:00 |
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dr. M.S. (Matthijs) Berends
|
92a32b62a7
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new website, freq updates
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2018-12-29 22:24:19 +01:00 |
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dr. M.S. (Matthijs) Berends
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0b8084871d
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dplyr 0.8.0 support, fixes #7
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2018-12-22 22:39:34 +01:00 |
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dr. M.S. (Matthijs) Berends
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b937662a97
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limits for scale_y_percent - Licence update
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2018-12-16 22:45:12 +01:00 |
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dr. M.S. (Matthijs) Berends
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2018d5b477
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age and age_groups
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2018-12-15 22:40:07 +01:00 |
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dr. M.S. (Matthijs) Berends
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857f565db0
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reorganised notes and warnings
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2018-12-14 10:52:20 +01:00 |
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dr. M.S. (Matthijs) Berends
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dec4947103
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freq header fix for NAs
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2018-12-14 10:08:51 +01:00 |
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dr. M.S. (Matthijs) Berends
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81af7be36e
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note about portions
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2018-12-14 07:23:25 +01:00 |
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dr. M.S. (Matthijs) Berends
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01a6d56334
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add kingdom to mo_taxonomy
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2018-12-10 21:47:25 +01:00 |
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dr. M.S. (Matthijs) Berends
|
5ab7eb07bc
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keyab automatic
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2018-12-10 15:14:29 +01:00 |
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dr. M.S. (Matthijs) Berends
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9478ab71be
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freq - decimals
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2018-12-10 10:13:40 +01:00 |
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dr. M.S. (Matthijs) Berends
|
8e8a9cd190
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AI improvements
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2018-12-07 12:04:55 +01:00 |
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dr. M.S. (Matthijs) Berends
|
60fe98bbbd
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better as.mo handling
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2018-12-06 14:36:39 +01:00 |
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dr. M.S. (Matthijs) Berends
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5cfa5bbfe3
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v0.5.0
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2018-11-30 16:16:04 +01:00 |
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dr. M.S. (Matthijs) Berends
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9ddf6dc530
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support A. species for as.mo, cleanup
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2018-11-24 20:25:09 +01:00 |
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dr. M.S. (Matthijs) Berends
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a8132922af
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unit test read.4d, unselecting freq cols
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2018-11-19 13:00:22 +01:00 |
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dr. M.S. (Matthijs) Berends
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4fcc2b409a
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MDRO update
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2018-11-16 20:50:50 +01:00 |
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dr. M.S. (Matthijs) Berends
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fab64e6728
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read.4D improvements
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2018-11-15 12:42:35 +01:00 |
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dr. M.S. (Matthijs) Berends
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6b0f4ffbd4
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new kingdom
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2018-11-09 13:11:54 +01:00 |
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dr. M.S. (Matthijs) Berends
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84e08f516a
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grouping var for freq
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2018-11-06 16:41:59 +01:00 |
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dr. M.S. (Matthijs) Berends
|
d15bb2ab3f
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read_4D
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2018-11-05 15:30:49 +01:00 |
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dr. M.S. (Matthijs) Berends
|
d07e9b904e
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new function get_locale
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2018-11-05 13:20:32 +01:00 |
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dr. M.S. (Matthijs) Berends
|
d0bc05e5b1
|
speed improvement is.rsi.eligible
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2018-11-02 14:55:29 +01:00 |
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dr. M.S. (Matthijs) Berends
|
5476fecc73
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eucast update
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2018-11-01 20:23:33 +01:00 |
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dr. M.S. (Matthijs) Berends
|
f7687557c9
|
eucast updates
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2018-11-01 17:06:08 +01:00 |
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dr. M.S. (Matthijs) Berends
|
9cd4ab928a
|
speed improvement as.mo, freq title
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2018-10-31 12:10:49 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
87757748bd
|
switch to gitlab
|
2018-10-23 16:49:40 +02:00 |
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dr. M.S. (Matthijs) Berends
|
7997de6a6d
|
mdro and 1st isolate improvements
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2018-10-23 11:15:05 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
299c5bea43
|
na freq, removed factors
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2018-10-23 09:42:26 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
c2a93b46db
|
breaks param, tidyr dep change, freq markdown
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2018-10-22 12:32:59 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
ec15b82fd6
|
param header for freq
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2018-10-19 21:52:08 +02:00 |
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dr. M.S. (Matthijs) Berends
|
86b03577a7
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fix for as.mo, added also_single_tested
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2018-10-19 13:53:31 +02:00 |
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dr. M.S. (Matthijs) Berends
|
b464dd524a
|
new verbose
|
2018-10-19 00:17:03 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
0ef91be3ac
|
param rules for EUCAST
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2018-10-18 12:10:10 +02:00 |
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dr. M.S. (Matthijs) Berends
|
693f64bdbf
|
new EUCAST rules: clinical breakpoints
|
2018-10-17 17:32:34 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
d5a41de711
|
parameter combine_IR
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2018-10-16 09:59:31 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
5b5b95a47b
|
count_all and some fixes
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2018-10-12 16:35:18 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
e7d937d36e
|
update NEWS
|
2018-10-10 10:50:19 +02:00 |
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dr. M.S. (Matthijs) Berends
|
95c9fdc552
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CRAN fixes for release 0.4.0
https://cran.r-project.org/web/checks/check_results_AMR.html
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2018-10-09 13:53:33 +02:00 |
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dr. M.S. (Matthijs) Berends
|
c7c57f4042
|
0.4.0, just published on CRAN
|
2018-10-01 19:36:42 +02:00 |
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dr. M.S. (Matthijs) Berends
|
ed17db0263
|
renamed year columns to ref
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2018-10-01 14:44:40 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
3119a221e5
|
authors from ITIS, diff for freq
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2018-10-01 11:39:43 +02:00 |
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dr. M.S. (Matthijs) Berends
|
92c9cc2608
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diff for freq, fix for mo_shortname
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2018-09-29 21:54:32 +02:00 |
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dr. M.S. (Matthijs) Berends
|
768fe17324
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removed clipboard functions as it violated CRAN policies
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2018-09-28 16:05:18 +02:00 |
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dr. M.S. (Matthijs) Berends
|
9c566585b0
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first inclusion of ITIS data
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2018-09-24 23:33:29 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
5d80cef338
|
added taxonomic data from ITIS
|
2018-09-17 20:53:32 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
7680e4edd8
|
add shortest and longest to freq for characters
|
2018-09-17 09:42:09 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
db14781593
|
add labels_rsi_count
|
2018-09-16 22:11:17 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
b792a2754e
|
added prevalence column and alterted as.mo algorith to use it, added ab_name as alias
|
2018-09-16 16:43:29 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
b0ca49d68d
|
small improvement for is.rsi.eligible, more unit tests
|
2018-09-14 11:54:01 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
cf5711fb0b
|
algorithm improvement
|
2018-09-14 10:31:21 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
cb0d74a4f0
|
support for French and Italian, added quote to freq
|
2018-09-10 15:45:25 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
b83e6a9380
|
algoritm improvement, removed all Catabacter except for C. hongkongensis
|
2018-09-10 11:40:54 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
26f5be0033
|
support for portuguese, language determination based on system
|
2018-09-08 16:06:47 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
e39a9a8b05
|
added mo_shortname
|
2018-09-05 10:51:46 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
790bd1622d
|
added vanA to vanE positive Enterococci
|
2018-09-05 09:49:19 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
b388e3fee7
|
Support for German and Spanish microorganism properties, cleanup
|
2018-09-04 11:33:30 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
5405002119
|
news update
|
2018-09-03 11:22:28 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
e25dd0e282
|
fix for joins
|
2018-09-03 10:04:49 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
75fe4d401f
|
new MOs, cleanup
|
2018-09-01 21:19:46 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
5965d3c794
|
replaced bactid by mo
|
2018-08-31 13:36:19 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
d9e68e0a50
|
ggplot_rsi example update, more unit tests
|
2018-08-29 16:25:57 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
029157b3be
|
163 new trade names, added ab_tradenames
|
2018-08-29 12:27:37 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
972fc4f6c7
|
ab_* functions, mo_* functions, 180 new microorganisms, speed improvement for bactid
|
2018-08-28 13:51:13 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
2acdb1981c
|
atc and bactid functions, readme update
|
2018-08-25 22:01:14 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
baaf4cc3e1
|
few extra tests
|
2018-08-24 14:18:38 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
a100d07da6
|
removed ratio, better rsi_calc, update for freq
|
2018-08-24 11:08:20 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
febd0ca885
|
geom_rsi - any parameter
|
2018-08-23 21:27:15 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
8ab93b6688
|
unit tests
|
2018-08-23 01:01:50 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
da5379c881
|
quasiquotation, alpha for geom_rsi
|
2018-08-23 00:40:36 +02:00 |
Christian Luz
|
87d08905cc
|
small change in mutate example
|
2018-08-22 12:55:05 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
3e87c8f409
|
count_* functions
|
2018-08-22 00:02:26 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
bc7e36b533
|
v0.3.0
|
2018-08-14 14:06:18 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
7584c929a5
|
new AppVeyor environment
|
2018-08-14 08:57:17 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
e5193c7749
|
AppVeyor
|
2018-08-13 23:05:53 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
59ce1eb1b1
|
ggplot_rsi improvements
|
2018-08-13 16:42:37 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
dba06c3295
|
abname improvement, small fixes
|
2018-08-13 11:00:53 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
1ba7d883fe
|
new ggplot enhancement
|
2018-08-11 21:30:00 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
53fa198e35
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new portion functions
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2018-08-10 15:01:05 +02:00 |
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dr. M.S. (Matthijs) Berends
|
ae2433a020
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rsi family for resistance analysis
|
2018-08-03 14:49:29 +02:00 |
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dr. M.S. (Matthijs) Berends
|
bd9bcfef78
|
thesis advisors
|
2018-08-03 09:59:39 +02:00 |
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dr. M.S. (Matthijs) Berends
|
6262315527
|
Becker classification
Lancefield classification
Added Lancefield groups to `microorganisms` data set
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2018-08-02 13:15:45 +02:00 |
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dr. M.S. (Matthijs) Berends
|
edd2dd09dc
|
rsi for freq
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2018-08-01 22:37:28 +02:00 |
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dr. M.S. (Matthijs) Berends
|
7c667eb732
|
emph guess_bactid
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2018-08-01 08:03:31 +02:00 |
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dr. M.S. (Matthijs) Berends
|
837dae925d
|
travis update
|
2018-07-30 01:21:37 +02:00 |
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dr. M.S. (Matthijs) Berends
|
211e3bae14
|
remove reshape2 dependency
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2018-07-30 01:18:40 +02:00 |
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dr. M.S. (Matthijs) Berends
|
510e8f22aa
|
more unit tests
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2018-07-30 00:57:49 +02:00 |
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dr. M.S. (Matthijs) Berends
|
826694323b
|
new functions R, RI, SI, S
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2018-07-29 22:14:51 +02:00 |
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dr. M.S. (Matthijs) Berends
|
8421e3f005
|
more mic classes
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2018-07-28 10:48:27 +02:00 |
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dr. M.S. (Matthijs) Berends
|
498e88b5cf
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improvement for forecasting resistance
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2018-07-26 16:30:42 +02:00 |
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dr. M.S. (Matthijs) Berends
|
d9e204031d
|
update to septic_patients, speed improvements
|
2018-07-25 14:17:04 +02:00 |
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dr. M.S. (Matthijs) Berends
|
8421638b60
|
new class bactid
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2018-07-23 14:14:03 +02:00 |
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dr. M.S. (Matthijs) Berends
|
ad662d7bab
|
new col names for `key_antibiotics`
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2018-07-19 15:11:23 +02:00 |
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dr. M.S. (Matthijs) Berends
|
0d64c166f0
|
keyab fixes
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2018-07-17 19:51:09 +02:00 |
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dr. M.S. (Matthijs) Berends
|
5cb9c541f8
|
new algorithm key abs
|
2018-07-17 13:02:05 +02:00 |
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dr. M.S. (Matthijs) Berends
|
a5a4354651
|
speed improvements
|
2018-07-17 10:32:26 +02:00 |
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dr. M.S. (Matthijs) Berends
|
715a7630ca
|
support format.freq
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2018-07-16 16:41:48 +02:00 |