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36fd99e1f4
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(v2.1.1.9235) New website!
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2025-04-08 15:54:30 +01:00 |
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a905303296
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(v2.1.1.9234) fix CLSI
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2025-04-07 17:36:01 +01:00 |
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1fdab84103
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(v2.1.1.9233) chore: make all argument texts full sentences
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2025-03-31 14:53:24 +02:00 |
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63099cd81e
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(v2.1.1.9232) is.mic() iteration, documentation cleanup
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2025-03-31 10:51:31 +02:00 |
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49da312506
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(v2.1.1.9228) repo cleaning
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2025-03-28 11:17:49 +01:00 |
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e6f88241b2
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(v2.1.1.9225) fix geom_hline()/_vline() in MIC plotting, add EUCAT 1.2 in full, add London contribs, fix mo codes, add Kleb pneu complex
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2025-03-26 17:19:17 +01:00 |
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7f1ae1f474
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(v2.1.1.9203) unit tests
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2025-03-15 13:25:23 +01:00 |
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72f2e723fb
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(v2.1.1.9200) new argument capped_mic_handling, add Search to website
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2025-03-14 17:01:50 +01:00 |
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861331b1df
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(v2.1.1.9196) fix eucast, unit tests
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2025-03-13 15:38:39 +01:00 |
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a7ef22a21e
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(v2.1.1.9194) new argument for missing R breakpoints - updated from WHONET
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2025-03-12 16:24:38 +01:00 |
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f7938289eb
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(v2.1.1.9186) replace antibiotics with antimicrobials!
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2025-03-07 20:43:26 +01:00 |
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07efc292bc
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(v2.1.1.9163) cleanup
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2025-02-27 14:04:29 +01:00 |
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66833b4f5a
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(v2.1.1.9126) implemented WISCA! Also added top_n_microorganisms() and fixed Python wrapper
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2025-01-26 23:01:17 +01:00 |
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ac1c40d8bb
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(v2.1.1.9081) HUGE microorganisms update for fungi!
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2024-09-29 22:17:56 +02:00 |
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1ca40e8d67
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(v2.1.1.9079) fix for uti in as.sir()
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2024-09-24 15:34:12 +02:00 |
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ef8ef28650
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(v2.1.1.9072)
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2024-09-19 11:46:17 +02:00 |
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c67d003e9e
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(v2.1.1.9060) SDD results now in as.sir()
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2024-06-19 15:08:23 +02:00 |
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0c3d81f32e
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(v2.1.1.9059) documentation fix
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2024-06-17 22:26:05 +02:00 |
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a4dc37a4e4
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(v2.1.1.9057) fix for missing breakpoints
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2024-06-17 16:52:12 +02:00 |
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d9e66fb118
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(v2.1.1.9056) example fix
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2024-06-17 14:52:18 +02:00 |
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1e65b5a289
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(v2.1.1.9055) example fix
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2024-06-17 14:36:40 +02:00 |
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13baf8d7be
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(v2.1.1.9054) fix examples
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2024-06-17 13:52:02 +02:00 |
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2dee1d71dc
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(v2.1.1.9053) add verbose to as.sir(), unit test fix
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2024-06-17 10:38:45 +02:00 |
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bdbf5198a2
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(v2.1.1.9050) vctrs fix for sir, small documentation fixes
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2024-06-15 15:33:49 +02:00 |
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9bf7584d58
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(v2.1.1.9049) new 2024 breakpoints, add AMO, set NI instead of N
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2024-06-14 22:39:01 +02:00 |
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31207952d3
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(v2.1.1.9043) fix sir translation with as.double
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2024-06-10 10:34:45 +02:00 |
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a3071cf58b
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(v2.1.1.9042) update translations and example isolates
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2024-06-09 11:31:04 +02:00 |
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7c1b564648
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fix SIR interpretation for uti
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2024-05-31 21:24:35 +02:00 |
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c3ce1b551d
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rename limit_mic_range() to rescale_mic()
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2024-05-24 15:07:41 +02:00 |
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d214f74e25
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allow column name for ab in as.sir()
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2024-05-20 21:29:13 +02:00 |
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08a27922a8
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new SDD and N for as.sir()
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2024-05-20 15:27:04 +02:00 |
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0039cb05d6
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update MIC comparisons
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2024-04-05 16:44:43 +02:00 |
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7be4dabbc0
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support veterinary MIC/disk translation
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2024-02-24 15:16:52 +01:00 |
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0c46f61260
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MO group fixes
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2023-07-12 15:04:48 +01:00 |
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a4e2e25e3f
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reftbl in plots, speedup for as.sir() and mo_validate
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2023-07-10 16:43:46 +02:00 |
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70c601ca11
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breakpoints UTI interpretation fix
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2023-07-10 13:41:52 +02:00 |
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acb534102b
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new species groups, updated clinical breakpoints
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2023-07-08 17:30:05 +02:00 |
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2d97cca6d9
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fix reference_df endless loop
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2023-06-26 13:52:02 +02:00 |
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Dr. Matthijs Berends
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f065945d7b
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Update clinical breakpoints and fix some as.mo() bugs (#117)
* Updates clinical breakpoints EUCAST/CLSI 2023, fixes #102, fixes #112, fixes #113, fixes #114, fixes #115
* docs
* implement ecoffs
* unit tests
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2023-06-22 15:10:59 +02:00 |
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02322ac2ee
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Fix PK/PD breakpoints
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2023-04-19 00:31:31 +02:00 |
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ed70f95380
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Fix clinical breakpoints
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2023-04-14 23:14:34 +02:00 |
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dad25302f2
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make rsi work in more cases, documentation update
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2023-02-22 14:38:57 +01:00 |
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68abb00c59
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add include_screening to as.sir()
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2023-02-12 15:09:54 +01:00 |
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bc434db835
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bring back antibiogram(), without deps
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2023-02-10 16:18:00 +01:00 |
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70a7ba0206
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fix first isolate
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2023-02-10 13:13:17 +01:00 |
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1a0dc4bf46
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revert back to pre-antibiogram
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2023-02-09 13:07:39 +01:00 |
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9e99e66f01
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use dplyr where available, new antibiogram() for WISCA, fixed Salmonella Typhi/Paratyphi
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2023-02-06 11:57:22 +01:00 |
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830c67f1bf
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documentation, unit tests
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2023-01-24 10:20:27 +01:00 |
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eef00069fd
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add all options to documentation
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2023-01-23 20:07:57 +01:00 |
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19fd0ef121
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sort sir history
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2023-01-23 15:01:21 +01:00 |
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