ad10693a1a
(v1.7.1.9014) rep() for S3 classes
2021-07-06 16:35:14 +02:00
5b5741f681
(v1.7.1.9011) subsetting taxonomy fix
2021-07-04 15:26:50 +02:00
bef0f42f66
(v1.7.0.9001) CLSI 2020 guideline
2021-06-01 15:33:06 +02:00
a13fd98e8b
(v1.6.0.9063) prepare new release
2021-05-24 09:00:11 +02:00
29dbfa2f49
(v1.6.0.9021) join functions update
2021-05-12 18:15:03 +02:00
00d3e437a8
(v1.6.0.9003) like() fix
2021-04-16 11:41:05 +02:00
4e0a9533ad
(v1.5.0.9041) SNOMED update
2021-03-11 21:42:30 +01:00
ddf88345f1
(v1.5.0.9028) Updated taxonomy until March 2021
2021-03-04 23:28:32 +01:00
4a84894f79
(v1.5.0.9016) only_rsi_columns update, documentation
2021-02-08 14:18:42 +01:00
8fda473e49
(v1.5.0.9015) unit test fix, grouped first isolates
2021-02-04 16:48:16 +01:00
2eca8c3f01
(v1.5.0.9014) only_rsi_columns, is.rsi.eligible improvement
2021-02-02 23:57:35 +01:00
4eab095306
(v1.5.0.9006) major documentation update
2021-01-18 16:57:56 +01:00
d014955ce0
(v.1.5.0.9000) implementation of EUCAST rules v11 (2021)
2021-01-12 22:08:04 +01:00
3b84b8be75
v1.5.0
2021-01-06 11:16:17 +01:00
afc325c314
(v1.4.0.9050) ab selectors base R
2020-12-27 20:32:40 +01:00
df37584189
(v1.4.0.9044) mo tibble printing, mo_shortname() fix
2020-12-24 23:29:10 +01:00
128ebcfd62
(v1.4.0.9043) documentation update
2020-12-22 00:51:17 +01:00
81af41da3a
(v1.4.0.9041) updates based on review
2020-12-17 16:22:25 +01:00
2145f1d1ba
(v1.4.0.9033) documentation update
2020-12-08 12:37:25 +01:00
05fb213a7c
(v1.4.0.9020) mo_is_intrinsic_resistant
2020-11-16 11:03:24 +01:00
dd5a0319ef
(v1.4.0.9014) bugfix
2020-11-09 15:18:36 +01:00
d3b1d33210
(v1.4.0.9013) is_gram_negative/positive update
2020-11-09 13:07:02 +01:00
760d69a3e0
(v1.4.0.9008) like variations
2020-10-26 12:23:03 +01:00
2ef7dfc8a3
(v1.4.0.9003) CoNS update
2020-10-20 21:00:57 +02:00
4e9ccb4435
(v1.4.0.9001) is_gram_positive(), is_gram_negative(), parameter hardening
2020-10-19 17:09:19 +02:00
28e77680c5
(v1.4.0) matching score update
2020-10-08 11:16:03 +02:00
4e0374af29
(v1.3.0.9035) mdro() for EUCAST 3.2, examples cleanup
2020-09-29 23:35:46 +02:00
36ec8b0d81
(v1.3.0.9033) skimr fix
2020-09-28 11:00:59 +02:00
22f6ceb3e4
(v1.3.0.9031) matching score update
2020-09-26 16:51:17 +02:00
050a9a04fb
(v1.3.0.9030) matching score update
2020-09-26 16:26:01 +02:00
4e40e42011
(v1.3.0.9022) mo_matching_score(), poorman update, as.rsi() fix
2020-09-18 16:05:53 +02:00
7b6dd676f7
(v1.3.0.9018) language corrections
2020-09-14 12:21:23 +02:00
c4b87fe241
(v1.3.0.9014) as.mo() speed improvement
2020-09-03 12:31:48 +02:00
c8c8bb4e3a
(v1.3.0.9006) website update
2020-08-21 11:40:13 +02:00
1b65d76cfb
(v1.2.0.9037) survey on website
2020-07-28 18:39:57 +02:00
76fc8e1b14
(v1.2.0.9026) move to github
2020-07-08 14:48:06 +02:00
93a158aebd
(v1.2.0.9011) mo_domain(), improved error handling
2020-06-22 11:18:40 +02:00
ae1969b941
(v1.1.0.9019) mo_source fix
2020-05-25 01:01:14 +02:00
b040185269
(v1.1.0.9000) CLSI as.rsi() fix, better vctrs support, new CI
2020-04-29 14:33:44 +02:00
5e2b294351
(v0.9.0.9026) update documentation
2020-02-17 14:38:01 +01:00
a13c62e6e8
(v0.9.0.9016) Support SNOMED codes
2020-01-27 19:14:23 +01:00
56ce9bf665
(v0.9.0) website fixes
2019-11-30 12:01:50 +01:00
c5f00f4a9f
(v0.8.0.9036) complete documentation rewrite
2019-11-28 22:32:17 +01:00
7c28b392b1
(v0.8.0.9035) add more mo codes
2019-11-24 22:48:56 +01:00
09c4b04cd0
(v0.8.0.9007) Enterobacterales order
2019-10-30 23:02:50 +01:00
7108454ba5
(v0.7.1.9055) algorithm improvements
2019-08-13 16:15:08 +02:00
6a349bf757
(v0.7.1.9032) eucast_rules() improvements
2019-08-09 14:28:46 +02:00
65c6702b21
(v0.7.1.9004) atc class removal
2019-06-27 11:57:45 +02:00
9c39c35f86
(v0.7.0.9010) mo_synonyms, plot/barplot fixes
2019-06-16 21:42:40 +02:00
8f674e19bb
(v0.7.0.9005) ab algorithm update
2019-06-11 14:18:25 +02:00
270aa0dd33
v0.7.0
2019-06-03 17:45:22 +02:00
493ae2ba0c
(v0.6.1.9044) first_isolate fix for species
2019-05-31 14:25:11 +02:00
4ca00e1868
speed improvement eucast_rules(), support more old MO codes
2019-05-20 12:00:18 +02:00
0dc0715dc6
CI tests
2019-05-13 12:21:57 +02:00
68cc7ef0d0
new antibiotics
2019-05-10 16:44:59 +02:00
30b559827c
documentation update
2019-04-07 22:40:02 +02:00
29f444543d
added Becker 2019
2019-03-26 14:24:03 +01:00
c6a12266e7
DSMZ data
2019-03-18 14:29:41 +01:00
b319b89750
WHONET fix
2019-03-09 08:21:00 +01:00
2565b60024
rlang dependency, new fungi
2019-02-28 13:56:28 +01:00
54162522bd
age_groups fix
2019-02-27 11:36:12 +01:00
41ad7a22c8
mo_rank mo_url, added Tremellales
2019-02-22 22:12:10 +01:00
68a9a35ed6
algorithm update
2019-02-21 18:55:52 +01:00
13120f465f
website update
2019-02-20 13:57:23 +01:00
8dc027309e
website update
2019-02-20 10:38:24 +01:00
fb1fc3686c
Catalogue of life
2019-02-20 00:04:48 +01:00
54f8258f8c
Catalogue of Life, replaces ITIS
2019-02-18 02:33:37 +01:00
3efb54d016
freq update
2019-01-29 20:20:09 +01:00
a2d3ea280a
text updates
2019-01-27 13:55:23 +01:00
f4ff98b470
WHO update, antibiotics update
2019-01-25 13:18:41 +01:00
5aad26035c
edited g.test
2019-01-12 11:06:58 +01:00
6b2d464f8c
big website update, licence txt update
2019-01-02 23:24:07 +01:00
01a6d56334
add kingdom to mo_taxonomy
2018-12-10 21:47:25 +01:00
6b0f4ffbd4
new kingdom
2018-11-09 13:11:54 +01:00
d07e9b904e
new function get_locale
2018-11-05 13:20:32 +01:00
5476fecc73
eucast update
2018-11-01 20:23:33 +01:00
9cd4ab928a
speed improvement as.mo, freq title
2018-10-31 12:10:49 +01:00
95c9fdc552
CRAN fixes for release 0.4.0
...
https://cran.r-project.org/web/checks/check_results_AMR.html
2018-10-09 13:53:33 +02:00
ed17db0263
renamed year columns to ref
2018-10-01 14:44:40 +02:00
3119a221e5
authors from ITIS, diff for freq
2018-10-01 11:39:43 +02:00
2b0080995e
speed improvement for as.mo, more old taxonomic names
2018-09-27 23:23:48 +02:00
450992baea
new: 1680 old taxonomic names
2018-09-25 16:44:40 +02:00
9c566585b0
first inclusion of ITIS data
2018-09-24 23:33:29 +02:00
5d80cef338
added taxonomic data from ITIS
2018-09-17 20:53:32 +02:00
4816419f0c
AI improvements for microorganisms
2018-09-09 12:11:44 +02:00
26f5be0033
support for portuguese, language determination based on system
2018-09-08 16:06:47 +02:00
de36b0be23
fix for empty values in mo_property
2018-09-05 12:21:27 +02:00
e39a9a8b05
added mo_shortname
2018-09-05 10:51:46 +02:00
b388e3fee7
Support for German and Spanish microorganism properties, cleanup
2018-09-04 11:33:30 +02:00
5965d3c794
replaced bactid by mo
2018-08-31 13:36:19 +02:00
972fc4f6c7
ab_* functions, mo_* functions, 180 new microorganisms, speed improvement for bactid
2018-08-28 13:51:13 +02:00
2acdb1981c
atc and bactid functions, readme update
2018-08-25 22:01:14 +02:00
uscloud
dcc26dd942
Update freq function
2018-05-22 16:34:22 +02:00
2509e2413d
MDRO, freq tables, new print format for tibbles
2018-04-18 12:24:54 +02:00
53464ff1c8
- For functions first_isolate, EUCAST_rules the antibiotic column names are case-insensitive
...
- Functions `first_isolate`, `EUCAST_rules` and `rsi_predict` supports tidyverse-like evaluation of parameters (no need to quote columns them anymore)
- Functions `clipboard_import` and `clipboard_export` as helper functions to quickly copy and paste from/to software like Excel and SPSS
- Renamed dataset `bactlist` to `microorganisms`
2018-03-23 14:46:02 +01:00
62304dc23f
first commit
2018-02-21 11:52:31 +01:00
