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68ac39aa7f
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(v1.4.0.9016) as.rsi() older R versions
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2020-11-10 19:59:14 +01:00 |
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15c732703d
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(v1.4.0.9015) bugfix
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2020-11-10 16:35:56 +01:00 |
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d3b1d33210
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(v1.4.0.9013) is_gram_negative/positive update
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2020-11-09 13:07:02 +01:00 |
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760d69a3e0
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(v1.4.0.9008) like variations
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2020-10-26 12:23:03 +01:00 |
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4e9ccb4435
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(v1.4.0.9001) is_gram_positive(), is_gram_negative(), parameter hardening
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2020-10-19 17:09:19 +02:00 |
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28e77680c5
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(v1.4.0) matching score update
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2020-10-08 11:16:03 +02:00 |
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c04dc852cf
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(v1.3.0.9039) lifecycle updates, added excess kurtosis
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2020-10-04 21:02:16 +02:00 |
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ac1c78c793
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(v1.3.0.9036) documentation fix
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2020-09-30 10:24:53 +02:00 |
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4e0374af29
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(v1.3.0.9035) mdro() for EUCAST 3.2, examples cleanup
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2020-09-29 23:35:46 +02:00 |
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68e6e1e329
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(v1.3.0.9034) eucast_rules summary fix
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2020-09-29 10:40:25 +02:00 |
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36ec8b0d81
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(v1.3.0.9033) skimr fix
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2020-09-28 11:00:59 +02:00 |
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519aada54f
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(v1.3.0.9032) support skimr
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2020-09-28 01:08:55 +02:00 |
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050a9a04fb
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(v1.3.0.9030) matching score update
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2020-09-26 16:26:01 +02:00 |
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9667c2994f
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(v1.3.0.9029) eucast rules fix, unique()
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2020-09-25 14:44:50 +02:00 |
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027215ed94
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(v1.3.0.9027) unit tests
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2020-09-24 00:50:23 +02:00 |
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c19095a3d5
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(v1.3.0.9026) eucast expert rules 3.2
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2020-09-24 00:30:11 +02:00 |
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a1411ddafc
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(v1.3.0.9025) optimalisation
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2020-09-19 15:15:57 +02:00 |
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2f0186ace2
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(v1.3.0.9024) optimalisation
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2020-09-19 12:57:51 +02:00 |
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d049cce69b
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(v1.3.0.9023) optimalisation
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2020-09-19 11:54:01 +02:00 |
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4e40e42011
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(v1.3.0.9022) mo_matching_score(), poorman update, as.rsi() fix
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2020-09-18 16:05:53 +02:00 |
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ab60f613aa
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(v1.3.0.9020) fix for uncertainty in as.mo()
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2020-09-14 19:41:48 +02:00 |
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0f6760d427
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(v1.3.0.9017) small fix
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2020-09-12 13:54:21 +02:00 |
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3ff871afeb
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(v1.3.0.9016) mo_uncertainties() overhaul
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2020-09-12 08:49:01 +02:00 |
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c4b87fe241
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(v1.3.0.9014) as.mo() speed improvement
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2020-09-03 12:31:48 +02:00 |
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74a172ef55
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(v1.3.0.9010) S3 extensions without dependencies
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2020-08-28 21:55:47 +02:00 |
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9b8db57c65
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(v1.3.0.9008) also tibble printing for ab
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2020-08-26 15:34:12 +02:00 |
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0d9602a6a9
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(v1.3.0.9000) support across() in as.rsi()
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2020-08-10 11:44:58 +02:00 |
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c5f7294381
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(v1.3.0) skip more CRAN tests
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2020-07-31 10:50:08 +02:00 |
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c8edcb7439
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(v1.3.0) small fixes
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2020-07-30 15:15:52 +02:00 |
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1b65d76cfb
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(v1.2.0.9037) survey on website
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2020-07-28 18:39:57 +02:00 |
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ab2b359e6b
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(v1.2.0.9036) unit test fix
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2020-07-22 12:29:51 +02:00 |
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09fba38ea6
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(v1.2.0.9035) as.mo() speed improvement
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2020-07-22 10:24:23 +02:00 |
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76fc8e1b14
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(v1.2.0.9026) move to github
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2020-07-08 14:48:06 +02:00 |
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152ac5bcad
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(v1.2.0.9023) ab_from_text() improvement
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2020-07-02 21:12:52 +02:00 |
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298e67a45b
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(v1.2.0.9022) as.ab() improvement
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2020-07-01 16:21:36 +02:00 |
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329a0eb0b6
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(v1.2.0.9019) ab_from_text() dose and administration
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2020-07-01 11:07:01 +02:00 |
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4f6f056077
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(v1.2.0.9017) ab_from_text() improvement
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2020-06-26 12:31:27 +02:00 |
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344bbd57f4
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(v1.2.0.9014) ab_from_text()
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2020-06-25 17:34:50 +02:00 |
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8a66e475d7
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(v1.2.0.9013) unit test fix
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2020-06-22 13:18:40 +02:00 |
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779a4e8348
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(v1.2.0.9012) mo_domain(), improved error handling
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2020-06-22 12:18:53 +02:00 |
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93a158aebd
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(v1.2.0.9011) mo_domain(), improved error handling
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2020-06-22 11:18:40 +02:00 |
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c4d7412f36
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(v1.2.0.9007) Tidyverse selections
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2020-06-17 01:39:30 +02:00 |
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5dc4c96b7d
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(v1.2.0.9001) filter_ab_class() update
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2020-06-03 11:48:00 +02:00 |
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d9a4b0bcaf
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(v1.1.0.9021) 1st isolates update
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2020-05-28 10:51:56 +02:00 |
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86d44054f0
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(v1.1.0.9020) updated taxonomy
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2020-05-27 16:37:49 +02:00 |
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e467cc103e
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(v1.1.0.9017) as.ab() update, added ab_url()
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2020-05-22 20:15:19 +02:00 |
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5216d2b520
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(v1.1.0.9014) lose dependencies
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2020-05-19 14:16:45 +02:00 |
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cb1814f5ff
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(v1.1.0.9013) lose dependencies
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2020-05-19 13:18:01 +02:00 |
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19703eb5d3
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(v1.1.0.9012) lose dependencies
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2020-05-19 12:08:49 +02:00 |
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bf0402a653
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(v1.1.0.9009) lose dependencies
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2020-05-18 10:30:53 +02:00 |
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071bdc5a9e
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(v1.1.0.9008) lose dependencies
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2020-05-17 11:56:12 +02:00 |
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29609a0e2c
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(v1.1.0.9006) lose dependencies
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2020-05-16 20:42:45 +02:00 |
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df2456b91f
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(v1.1.0.9005) lose dependencies
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2020-05-16 20:08:21 +02:00 |
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7f3da74b17
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(v1.1.0.9004) lose dependencies
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2020-05-16 13:05:47 +02:00 |
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9fce546901
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(v1.1.0.9003) CI fix
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2020-05-01 09:14:32 +02:00 |
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5bdece1f9d
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(v1.1.0.9000) CI fix
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2020-04-30 09:05:03 +02:00 |
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b040185269
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(v1.1.0.9000) CLSI as.rsi() fix, better vctrs support, new CI
|
2020-04-29 14:33:44 +02:00 |
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4be54d608c
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(v1.0.1.9008) RIVM abbreviations for drugs
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2020-04-14 20:38:09 +02:00 |
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219cff403f
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(v1.0.1.9004) Support dplyr 1.0.0
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2020-03-14 14:05:43 +01:00 |
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77656a676c
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(v1.0.1.9002) PCA unit tests
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2020-03-08 11:18:59 +01:00 |
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9fc858f208
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(v1.0.1.9001) PCA unit tests
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2020-03-08 09:12:11 +01:00 |
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0595af2801
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(v1.0.0.9006) fix WARNING
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2020-02-21 21:26:58 +01:00 |
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ea32e9916a
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(v1.0.0.9005) info printing only in interactive mode
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2020-02-21 21:13:38 +01:00 |
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47fe8b7820
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(v1.0.0.9004) add example_isolaten_unclean
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2020-02-21 16:05:19 +01:00 |
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bb3728f023
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(v1.0.0.9003) prepare for short update
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2020-02-21 13:13:34 +01:00 |
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c6184a0fb8
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(v0.9.0.9029) add uti to as.rsi()
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2020-02-20 13:19:23 +01:00 |
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c7a93af3d0
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(v0.9.0.9024) global vars fix
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2020-02-14 20:03:43 +01:00 |
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9b8b02960e
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(v0.9.0.9023) EUCAST 2020 guidelines
|
2020-02-14 19:54:13 +01:00 |
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f152ab9a48
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(v0.9.0.9018) Remove mo_history
|
2020-01-31 23:27:38 +01:00 |
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a13c62e6e8
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(v0.9.0.9016) Support SNOMED codes
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2020-01-27 19:14:23 +01:00 |
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449d9bde35
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(v0.9.0.9012) Support for LOINC codes
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2020-01-26 20:20:00 +01:00 |
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ced1a7b7fa
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(v0.9.0.9008) Happy new year! Add lifecycles
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2020-01-05 17:22:09 +01:00 |
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ba3ce77f02
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(v0.9.0.9005) as.mo for G. species
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2019-12-21 10:56:06 +01:00 |
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9feef53bde
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(v0.8.0.9037) complete documentation rewrite
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2019-11-28 23:00:37 +01:00 |
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c5f00f4a9f
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(v0.8.0.9036) complete documentation rewrite
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2019-11-28 22:32:17 +01:00 |
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267320f15f
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(v0.8.0.9033) antivirals data set, cleanup
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2019-11-18 12:10:47 +01:00 |
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59ededa8dc
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(v0.8.0.9027) adding susceptibility() and resistance()
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2019-11-10 12:16:56 +01:00 |
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a8c48cb2d7
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(v0.8.0.9025) appveyor fix
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2019-11-10 09:21:43 +01:00 |
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07f945de53
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(v0.8.0.9024) appveyor fix
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2019-11-10 09:04:18 +01:00 |
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1de1cc58f2
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ci fix
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2019-11-06 16:22:44 +01:00 |
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1c4f91ab74
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ci fix
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2019-11-06 16:08:58 +01:00 |
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e2d05cb1b0
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(v0.8.0.9017) keywords update
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2019-11-06 14:43:23 +01:00 |
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5345d2759a
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(v0.8.0.9012) mdro improvement
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2019-11-05 11:28:52 +01:00 |
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29e448883d
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(v0.8.0.9008) new verbose mode for MDROs
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2019-11-03 22:24:42 +01:00 |
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09c4b04cd0
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(v0.8.0.9007) Enterobacterales order
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2019-10-30 23:02:50 +01:00 |
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412077a6f2
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(v0.8.0.9005) fix unit tests
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2019-10-26 22:21:26 +02:00 |
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d2e8249edd
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(v0.8.0.9004) added MDR guideline by Magiorakos et al.
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2019-10-26 21:56:41 +02:00 |
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3e5ab53209
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(v0.8.0.9002) eucast_rules() fix for S. maltophilia
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2019-10-23 14:48:25 +02:00 |
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10e6b225e7
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(v0.7.1.9107) v0.8.0
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2019-10-15 14:35:23 +02:00 |
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00cdb498a0
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(v0.7.1.9102) lintr
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2019-10-11 17:21:02 +02:00 |
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5dbff3e170
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(v0.7.1.9098) mdro() unit test fix
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2019-10-07 15:12:42 +02:00 |
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4e9c4c1b4e
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(v0.7.1.9096) German guideline for mdro()
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2019-10-07 14:32:06 +02:00 |
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b6653a620a
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(v0.7.1.9093) as.ab() fix
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2019-10-06 21:07:38 +02:00 |
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8bc4081b03
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(v0.7.1.9092) as.ab() improvements
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2019-10-04 15:36:12 +02:00 |
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edb599ae0b
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(v0.7.1.9091) percentage from clean pkg
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2019-09-30 16:45:36 +02:00 |
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76dc948067
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(v0.7.1.9084) CI fix
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2019-09-23 20:55:54 +02:00 |
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64d9829030
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(v0.7.1.9081) bug_drug fixes
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2019-09-23 13:53:50 +02:00 |
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3596adb295
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(v0.7.1.9076) mo codes
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2019-09-20 12:33:05 +02:00 |
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e2aa4f996b
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(v0.7.1.9075) new microorganism codes
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2019-09-18 15:46:09 +02:00 |
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398c5bdc4f
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(v0.7.1.9073) as.mo() self-learning algorithm
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2019-09-15 22:57:30 +02:00 |
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cd178ee569
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(v0.7.1.9072) key_antibiotics() for foreign systems
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2019-09-12 15:08:53 +02:00 |
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b5d2a08401
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(v0.7.1.9071) p_symbol()
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2019-09-03 09:47:39 +02:00 |
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06b6266366
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(v0.7.1.9070) na.rm for age(), age_groups()
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2019-09-02 15:17:41 +02:00 |
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c7be72f0ce
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(v0.7.1.9069) documentation update
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2019-09-01 13:16:57 +02:00 |
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88ee1b7268
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(v0.7.1.9068) gramstain to freq()
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2019-08-30 14:50:56 +02:00 |
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e2b78fa428
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(v0.7.1.9066) bug-drug fix
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2019-08-27 23:00:00 +02:00 |
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93be16484b
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(v0.7.1.9063) septic_patients -> example_isolates
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2019-08-27 16:45:42 +02:00 |
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7a6fce4eb8
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(v0.7.1.9062) mo/ab assignment improvements
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2019-08-26 16:02:03 +02:00 |
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e46cb0399f
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(v0.7.1.9059) bug_drug_combinations
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2019-08-25 22:53:22 +02:00 |
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04d49a62af
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(v0.7.1.9057) get_column_abx() improvement
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2019-08-15 17:09:27 +02:00 |
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7108454ba5
|
(v0.7.1.9055) algorithm improvements
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2019-08-13 16:15:08 +02:00 |
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6c4822164c
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Merge branch 'premaster'
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2019-08-12 19:32:30 +02:00 |
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5f2733349e
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(v0.7.1.9038) mo algorithm inprovements
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2019-08-12 19:07:15 +02:00 |
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bd252a2984
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(v0.7.1.9036) preserve ab/mo classes in subsetting
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2019-08-12 14:48:09 +02:00 |
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990709c151
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Merge branch 'premaster'
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2019-08-11 22:23:18 +02:00 |
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1d423cca89
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(v0.7.1.9035) cephalosporins and unit tests
|
2019-08-11 19:07:26 +02:00 |
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b790030c5f
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Merge branch 'premaster'
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2019-08-09 09:33:26 +02:00 |
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1ce4b72dd2
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(v0.7.1.9031) include_unknown for first_isolate()
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2019-08-08 22:39:42 +02:00 |
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43e81bda75
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(v0.7.1.9029) unit test
Merge branch 'premaster'
# Conflicts:
# tests/testthat/test-resistance_predict.R
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2019-08-07 19:22:46 +02:00 |
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f67c739892
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(v0.7.1.9029) unit test
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2019-08-07 18:56:14 +02:00 |
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e5cc09dbc0
|
Merge branch 'premaster'
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2019-08-07 16:27:37 +02:00 |
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90c874025a
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(v0.7.1.9027) tibble printing
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2019-08-07 15:37:39 +02:00 |
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3e9a263fc4
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Merge branch 'master' of https://gitlab.com/msberends/AMR
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2019-08-06 16:16:57 +02:00 |
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3a1f960f89
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(v0.7.1.9024) eucast_rules() fix, new MOs
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2019-08-06 14:39:22 +02:00 |
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f404db85d4
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Merge branch 'premaster' of https://gitlab.com/msberends/AMR into premaster
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2019-08-04 13:32:36 +02:00 |
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d6ab3896a1
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(v0.7.1.9021) CI fix for resistance_predict
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2019-08-04 10:48:41 +02:00 |
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b730920bb3
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Merge branch 'premaster' of https://gitlab.com/msberends/AMR into premaster
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2019-07-29 23:48:34 +02:00 |
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240f03a672
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(v0.7.1.9015) Remove freq()
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2019-07-29 13:33:48 +02:00 |
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7bd29cb8ef
|
codecov update
|
2019-07-11 16:08:56 +02:00 |
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68230d0712
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(v0.7.1.90012) mo_shortname fix
|
2019-07-10 21:36:51 +02:00 |
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a56a87c7db
|
quickfix
|
2019-07-09 20:26:42 +02:00 |
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c57ad26c5b
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(v0.7.1.9007) mdro update
|
2019-07-04 15:26:07 +02:00 |
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4ff20af123
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(v0.7.1.9006) new rsi calculations, atc class removal
|
2019-07-02 16:48:52 +02:00 |
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156d550895
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(v0.7.1.9005) new rsi calculations, atc class removal
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2019-07-01 14:03:15 +02:00 |
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65c6702b21
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(v0.7.1.9004) atc class removal
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2019-06-27 11:57:45 +02:00 |
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b94638d53e
|
(v0.7.0.9014) unit tests
|
2019-06-22 20:14:06 +02:00 |
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c9156c004a
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(v0.7.0.9013) mo_synonym fix
|
2019-06-22 14:49:12 +02:00 |
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9c39c35f86
|
(v0.7.0.9010) mo_synonyms, plot/barplot fixes
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2019-06-16 21:42:40 +02:00 |
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254745061c
|
(v0.7.0.9008) T. vaginalis, rsi_df
|
2019-06-13 14:28:46 +02:00 |
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8f674e19bb
|
(v0.7.0.9005) ab algorithm update
|
2019-06-11 14:18:25 +02:00 |
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ec48f1d83b
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(v0.7.0.9003) scale fix
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2019-06-08 23:50:06 +02:00 |
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f02679fb63
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(v0.7.0.9001) new pathovars, small fixes
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2019-06-07 22:47:37 +02:00 |
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270aa0dd33
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v0.7.0
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2019-06-03 17:45:22 +02:00 |
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bd73988f15
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(v0.6.1.9053) prerelease fixes
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2019-06-02 19:23:19 +02:00 |
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5608b27c7c
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(v0.6.1.9051) support staged install
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2019-06-01 20:54:56 +02:00 |
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4bac768557
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(v0.6.1.9048) data creation fox
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2019-05-31 21:01:14 +02:00 |
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0a6580b4eb
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(v0.6.1.9047) ggplot fix
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2019-05-31 20:48:22 +02:00 |
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4ed27c7e7a
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(v0.6.1.9046) ggplot fix
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2019-05-31 20:25:57 +02:00 |
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f03f71eced
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(v0.6.1.9045) age test fix
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2019-05-31 14:40:15 +02:00 |
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493ae2ba0c
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(v0.6.1.9044) first_isolate fix for species
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2019-05-31 14:25:11 +02:00 |
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