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mirror of https://github.com/msberends/AMR.git synced 2024-12-29 12:46:13 +01:00
Commit Graph

62 Commits

Author SHA1 Message Date
eff164ecb1 indicate unique identifiers 2023-07-12 21:26:32 +02:00
acb534102b new species groups, updated clinical breakpoints 2023-07-08 17:30:05 +02:00
2d97cca6d9 fix reference_df endless loop 2023-06-26 13:52:02 +02:00
Dr. Matthijs Berends
f065945d7b
Update clinical breakpoints and fix some as.mo() bugs (#117)
* Updates clinical breakpoints EUCAST/CLSI 2023, fixes #102, fixes #112, fixes #113, fixes #114, fixes #115
* docs
* implement ecoffs
* unit tests
2023-06-22 15:10:59 +02:00
9591688811 documentation update 2023-05-27 10:39:22 +02:00
c6135d2082 updated microorganism codes 2023-05-26 16:10:01 +02:00
ed70f95380 Fix clinical breakpoints 2023-04-14 23:14:34 +02:00
147f9112e9 Fix some WHONET codes 2023-04-14 11:12:26 +02:00
bc434db835 bring back antibiogram(), without deps 2023-02-10 16:18:00 +01:00
1a0dc4bf46 revert back to pre-antibiogram 2023-02-09 13:07:39 +01:00
9e99e66f01 use dplyr where available, new antibiogram() for WISCA, fixed Salmonella Typhi/Paratyphi 2023-02-06 11:57:22 +01:00
830c67f1bf documentation, unit tests 2023-01-24 10:20:27 +01:00
593d740b84 documentation, file permissions 2023-01-19 12:54:53 +01:00
5f3a7694aa microorganisms update, added Salmonella groups 2022-12-16 16:10:43 +01:00
c2801ba7a1 new rsi_translation 2022-10-22 22:00:15 +02:00
Dr. Matthijs Berends
cd2acc4a29
New mo algorithm, prepare for 2.0 2022-10-05 09:12:22 +02:00
fbd5d32541 small fixes 2022-08-29 09:35:36 +02:00
303d61b473 new tibble export 2022-08-27 20:49:37 +02:00
952d16de33 new, automated website 2022-08-21 16:37:20 +02:00
18e8525d10 (v1.8.0.9001) as.mo improvement, fixes #52 2022-02-26 21:58:23 +01:00
37e6e35ec4 (v1.7.1.9051) updated taxonomy, updated git branch name 2021-10-06 13:23:57 +02:00
8f5e5a3fc2 (v1.7.1.9050) fix for as.mo 2021-10-05 14:00:35 +02:00
bef0f42f66 (v1.7.0.9001) CLSI 2020 guideline 2021-06-01 15:33:06 +02:00
5679ccdaf9 (v1.6.0.9017) extra system codes 2021-05-04 12:47:33 +02:00
ddf88345f1 (v1.5.0.9028) Updated taxonomy until March 2021 2021-03-04 23:28:32 +01:00
2eca8c3f01 (v1.5.0.9014) only_rsi_columns, is.rsi.eligible improvement 2021-02-02 23:57:35 +01:00
4eab095306 (v1.5.0.9006) major documentation update 2021-01-18 16:57:56 +01:00
d014955ce0 (v.1.5.0.9000) implementation of EUCAST rules v11 (2021) 2021-01-12 22:08:04 +01:00
3b84b8be75 v1.5.0 2021-01-06 11:16:17 +01:00
2145f1d1ba (v1.4.0.9033) documentation update 2020-12-08 12:37:25 +01:00
28e77680c5 (v1.4.0) matching score update 2020-10-08 11:16:03 +02:00
4e40e42011 (v1.3.0.9022) mo_matching_score(), poorman update, as.rsi() fix 2020-09-18 16:05:53 +02:00
c4b87fe241 (v1.3.0.9014) as.mo() speed improvement 2020-09-03 12:31:48 +02:00
5e45fdcf2a (v1.3.0.9007) tibble printing 2020-08-26 11:33:54 +02:00
c8c8bb4e3a (v1.3.0.9006) website update 2020-08-21 11:40:13 +02:00
1b65d76cfb (v1.2.0.9037) survey on website 2020-07-28 18:39:57 +02:00
76fc8e1b14 (v1.2.0.9026) move to github 2020-07-08 14:48:06 +02:00
86d44054f0 (v1.1.0.9020) updated taxonomy 2020-05-27 16:37:49 +02:00
d1cb7d3b6f (v1.0.1.9005) as.mo() improvements 2020-04-13 21:09:56 +02:00
219cff403f (v1.0.1.9004) Support dplyr 1.0.0 2020-03-14 14:05:43 +01:00
5e2b294351 (v0.9.0.9026) update documentation 2020-02-17 14:38:01 +01:00
c7a76ba713 (v0.9.0.9020) as.mo() improvement 2020-02-09 22:04:29 +01:00
c5f00f4a9f (v0.8.0.9036) complete documentation rewrite 2019-11-28 22:32:17 +01:00
7c28b392b1 (v0.8.0.9035) add more mo codes 2019-11-24 22:48:56 +01:00
66d405ff57 (v0.7.1.9080) new LIS codes 2019-09-22 17:19:59 +02:00
e2aa4f996b (v0.7.1.9075) new microorganism codes 2019-09-18 15:46:09 +02:00
7108454ba5 (v0.7.1.9055) algorithm improvements 2019-08-13 16:15:08 +02:00
3f5828e74a (v0.7.1.9034) mo.codes fix for Dracunculus spp. 2019-08-09 23:45:26 +02:00
bd73988f15 (v0.6.1.9053) prerelease fixes 2019-06-02 19:23:19 +02:00
493ae2ba0c (v0.6.1.9044) first_isolate fix for species 2019-05-31 14:25:11 +02:00