 dr. M.S. (Matthijs) Berends
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c0cf7ab02b
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(v1.2.0.9033) speed improvement mdro(), filter_ab_class()
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2020-07-12 11:43:31 +02:00 |
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dr. M.S. (Matthijs) Berends
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1d66b5c43c
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(v1.2.0.9032) Permanently move to GitHub
|
2020-07-09 20:07:39 +02:00 |
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dr. M.S. (Matthijs) Berends
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cf3c3ee8f7
|
(v1.2.0.9029) GitHub actions
|
2020-07-08 22:55:17 +02:00 |
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dr. M.S. (Matthijs) Berends
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76fc8e1b14
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(v1.2.0.9026) move to github
|
2020-07-08 14:48:06 +02:00 |
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dr. M.S. (Matthijs) Berends
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2134fc76e2
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(v1.2.0.9025) AMR calculation speed improvement
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2020-07-03 12:14:41 +02:00 |
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dr. M.S. (Matthijs) Berends
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46cf423eab
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(v1.2.0.9024) AMR calculation speed improvement
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2020-07-03 10:51:55 +02:00 |
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dr. M.S. (Matthijs) Berends
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152ac5bcad
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(v1.2.0.9023) ab_from_text() improvement
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2020-07-02 21:12:52 +02:00 |
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dr. M.S. (Matthijs) Berends
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298e67a45b
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(v1.2.0.9022) as.ab() improvement
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2020-07-01 16:21:36 +02:00 |
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dr. M.S. (Matthijs) Berends
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afc660dc33
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(v1.2.0.9021) only progressbar in interactive sessions
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2020-07-01 11:51:26 +02:00 |
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dr. M.S. (Matthijs) Berends
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cc6ce0a938
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(v1.2.0.9020) ab_from_text() improvement
|
2020-07-01 11:23:05 +02:00 |
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dr. M.S. (Matthijs) Berends
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329a0eb0b6
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(v1.2.0.9019) ab_from_text() dose and administration
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2020-07-01 11:07:01 +02:00 |
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dr. M.S. (Matthijs) Berends
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240d817b4e
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(v1.2.0.9018) ab_from_text() improvement
|
2020-06-26 13:15:46 +02:00 |
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dr. M.S. (Matthijs) Berends
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4f6f056077
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(v1.2.0.9017) ab_from_text() improvement
|
2020-06-26 12:31:27 +02:00 |
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dr. M.S. (Matthijs) Berends
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b31003c0b6
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(v1.2.0.9016) fix in rsi_calc()
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2020-06-26 10:21:22 +02:00 |
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dr. M.S. (Matthijs) Berends
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033ca49817
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(v1.2.0.9015) ab_from_text()
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2020-06-25 19:20:50 +02:00 |
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dr. M.S. (Matthijs) Berends
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344bbd57f4
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(v1.2.0.9014) ab_from_text()
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2020-06-25 17:34:50 +02:00 |
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dr. M.S. (Matthijs) Berends
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8a66e475d7
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(v1.2.0.9013) unit test fix
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2020-06-22 13:18:40 +02:00 |
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dr. M.S. (Matthijs) Berends
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779a4e8348
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(v1.2.0.9012) mo_domain(), improved error handling
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2020-06-22 12:18:53 +02:00 |
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dr. M.S. (Matthijs) Berends
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93a158aebd
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(v1.2.0.9011) mo_domain(), improved error handling
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2020-06-22 11:18:40 +02:00 |
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dr. M.S. (Matthijs) Berends
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e88d7853f5
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(v1.2.0.9010) documentation fix
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2020-06-17 21:35:10 +02:00 |
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dr. M.S. (Matthijs) Berends
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f18389d5d6
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(v1.2.0.9009) pkg dependency fix
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2020-06-17 16:29:10 +02:00 |
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dr. M.S. (Matthijs) Berends
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ac12392da3
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(v1.2.0.9008) ab_class improvement
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2020-06-17 15:14:37 +02:00 |
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dr. M.S. (Matthijs) Berends
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c4d7412f36
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(v1.2.0.9007) Tidyverse selections
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2020-06-17 01:39:30 +02:00 |
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dr. M.S. (Matthijs) Berends
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4f94e1312f
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(v1.2.0.9006) improve auto col-determination
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2020-06-11 20:03:13 +02:00 |
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dr. M.S. (Matthijs) Berends
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8b692ecfcf
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(v1.2.0.9004) rsi_df() fix for groups
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2020-06-09 16:18:03 +02:00 |
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dr. M.S. (Matthijs) Berends
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40221e5244
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(v1.2.0.9003) better terminal colour support
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2020-06-05 13:56:05 +02:00 |
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dr. M.S. (Matthijs) Berends
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2c8d600914
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(v1.2.0.9002) fix for joins
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2020-06-03 14:33:55 +02:00 |
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dr. M.S. (Matthijs) Berends
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5dc4c96b7d
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(v1.2.0.9001) filter_ab_class() update
|
2020-06-03 11:48:00 +02:00 |
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dr. M.S. (Matthijs) Berends
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02d07b9fb3
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(v1.2.0.9000) eucast_rules() fix for tibbles
|
2020-06-02 16:05:56 +02:00 |
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dr. M.S. (Matthijs) Berends
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b44e2c9202
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v1.2.0
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2020-05-28 16:48:55 +02:00 |
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dr. M.S. (Matthijs) Berends
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d9a4b0bcaf
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(v1.1.0.9021) 1st isolates update
|
2020-05-28 10:51:56 +02:00 |
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dr. M.S. (Matthijs) Berends
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86d44054f0
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(v1.1.0.9020) updated taxonomy
|
2020-05-27 16:37:49 +02:00 |
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dr. M.S. (Matthijs) Berends
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ae1969b941
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(v1.1.0.9019) mo_source fix
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2020-05-25 01:01:14 +02:00 |
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dr. M.S. (Matthijs) Berends
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f5ff2e6634
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(v1.1.0.9018) as.ab() update, added ab_url()
|
2020-05-22 20:29:55 +02:00 |
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dr. M.S. (Matthijs) Berends
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e467cc103e
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(v1.1.0.9017) as.ab() update, added ab_url()
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2020-05-22 20:15:19 +02:00 |
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dr. M.S. (Matthijs) Berends
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1b1e243d14
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(v1.1.0.9016) small fix
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2020-05-21 12:28:57 +02:00 |
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dr. M.S. (Matthijs) Berends
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743f9a5364
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(v1.1.0.9015) new default eucast_rules
|
2020-05-20 12:00:17 +02:00 |
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dr. M.S. (Matthijs) Berends
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5216d2b520
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(v1.1.0.9014) lose dependencies
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2020-05-19 14:16:45 +02:00 |
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dr. M.S. (Matthijs) Berends
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cb1814f5ff
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(v1.1.0.9013) lose dependencies
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2020-05-19 13:18:01 +02:00 |
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dr. M.S. (Matthijs) Berends
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19703eb5d3
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(v1.1.0.9012) lose dependencies
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2020-05-19 12:08:49 +02:00 |
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dr. M.S. (Matthijs) Berends
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218fd08097
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(v1.1.0.9011) lose dependencies
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2020-05-18 13:59:34 +02:00 |
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dr. M.S. (Matthijs) Berends
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d659c9baef
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(v1.1.0.9010) lose dependencies
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2020-05-18 11:09:02 +02:00 |
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dr. M.S. (Matthijs) Berends
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bf0402a653
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(v1.1.0.9009) lose dependencies
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2020-05-18 10:30:53 +02:00 |
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dr. M.S. (Matthijs) Berends
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f68d71a5e0
|
(v1.1.0.9007) lose dependencies
|
2020-05-16 21:40:50 +02:00 |
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dr. M.S. (Matthijs) Berends
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29609a0e2c
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(v1.1.0.9006) lose dependencies
|
2020-05-16 20:42:45 +02:00 |
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dr. M.S. (Matthijs) Berends
|
df2456b91f
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(v1.1.0.9005) lose dependencies
|
2020-05-16 20:08:21 +02:00 |
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dr. M.S. (Matthijs) Berends
|
7f3da74b17
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(v1.1.0.9004) lose dependencies
|
2020-05-16 13:05:47 +02:00 |
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dr. M.S. (Matthijs) Berends
|
5bdece1f9d
|
(v1.1.0.9000) CI fix
|
2020-04-30 09:05:03 +02:00 |
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dr. M.S. (Matthijs) Berends
|
b040185269
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(v1.1.0.9000) CLSI as.rsi() fix, better vctrs support, new CI
|
2020-04-29 14:33:44 +02:00 |
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dr. M.S. (Matthijs) Berends
|
c2ffbd9f95
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(v1.0.1.9009) prepare for next release
|
2020-04-15 11:30:28 +02:00 |
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dr. M.S. (Matthijs) Berends
|
4be54d608c
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(v1.0.1.9008) RIVM abbreviations for drugs
|
2020-04-14 20:38:09 +02:00 |
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dr. M.S. (Matthijs) Berends
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cde65141d9
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(v1.0.1.9007) small bugfix
|
2020-04-14 15:10:09 +02:00 |
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dr. M.S. (Matthijs) Berends
|
7a6f819232
|
(v1.0.1.9006) added generic CLSI rules
|
2020-04-14 14:12:31 +02:00 |
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dr. M.S. (Matthijs) Berends
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d1cb7d3b6f
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(v1.0.1.9005) as.mo() improvements
|
2020-04-13 21:09:56 +02:00 |
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dr. M.S. (Matthijs) Berends
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219cff403f
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(v1.0.1.9004) Support dplyr 1.0.0
|
2020-03-14 14:05:43 +01:00 |
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dr. M.S. (Matthijs) Berends
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77656a676c
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(v1.0.1.9002) PCA unit tests
|
2020-03-08 11:18:59 +01:00 |
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dr. M.S. (Matthijs) Berends
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9fc858f208
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(v1.0.1.9001) PCA unit tests
|
2020-03-08 09:12:11 +01:00 |
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dr. M.S. (Matthijs) Berends
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fa0d9c58d9
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(v1.0.1.9000) first PCA implementation
|
2020-03-07 21:48:21 +01:00 |
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dr. M.S. (Matthijs) Berends
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0d5e78b2cf
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(v1.0.0.9007) small doc fix
|
2020-02-22 17:03:47 +01:00 |
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dr. M.S. (Matthijs) Berends
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ea32e9916a
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(v1.0.0.9005) info printing only in interactive mode
|
2020-02-21 21:13:38 +01:00 |
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dr. M.S. (Matthijs) Berends
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47fe8b7820
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(v1.0.0.9004) add example_isolaten_unclean
|
2020-02-21 16:05:19 +01:00 |
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dr. M.S. (Matthijs) Berends
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bb3728f023
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(v1.0.0.9003) prepare for short update
|
2020-02-21 13:13:34 +01:00 |
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dr. M.S. (Matthijs) Berends
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6408911922
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(v1.0.0.9002) fix lintr
|
2020-02-20 20:31:42 +01:00 |
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dr. M.S. (Matthijs) Berends
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bdb26f624f
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(v1.0.0.9001) add uti to as.rsi()
|
2020-02-20 17:21:01 +01:00 |
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dr. M.S. (Matthijs) Berends
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c6184a0fb8
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(v0.9.0.9029) add uti to as.rsi()
|
2020-02-20 13:19:23 +01:00 |
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dr. M.S. (Matthijs) Berends
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c8981a563e
|
(v0.9.0.9027) documentation fix
|
2020-02-17 15:07:25 +01:00 |
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dr. M.S. (Matthijs) Berends
|
5e2b294351
|
(v0.9.0.9026) update documentation
|
2020-02-17 14:38:01 +01:00 |
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dr. M.S. (Matthijs) Berends
|
11f00f8a0a
|
(v0.9.0.9025) update as.rsi documentation
|
2020-02-16 22:43:56 +01:00 |
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dr. M.S. (Matthijs) Berends
|
c7a93af3d0
|
(v0.9.0.9024) global vars fix
|
2020-02-14 20:03:43 +01:00 |
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dr. M.S. (Matthijs) Berends
|
9b8b02960e
|
(v0.9.0.9023) EUCAST 2020 guidelines
|
2020-02-14 19:54:13 +01:00 |
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dr. M.S. (Matthijs) Berends
|
5a98e6b777
|
(v0.9.0.9022) inheritance fix
|
2020-02-10 14:18:15 +01:00 |
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dr. M.S. (Matthijs) Berends
|
b4356a299c
|
(v0.9.0.9021) inheritance fix
|
2020-02-10 12:25:02 +01:00 |
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dr. M.S. (Matthijs) Berends
|
c7a76ba713
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(v0.9.0.9020) as.mo() improvement
|
2020-02-09 22:04:29 +01:00 |
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dr. M.S. (Matthijs) Berends
|
4e1c16c5a5
|
(v0.9.0.9019) website update
|
2020-02-01 15:09:36 +01:00 |
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dr. M.S. (Matthijs) Berends
|
f152ab9a48
|
(v0.9.0.9018) Remove mo_history
|
2020-01-31 23:27:38 +01:00 |
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dr. M.S. (Matthijs) Berends
|
1b80773c22
|
(v0.9.0.9017) documentation fix
|
2020-01-27 19:30:26 +01:00 |
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dr. M.S. (Matthijs) Berends
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a13c62e6e8
|
(v0.9.0.9016) Support SNOMED codes
|
2020-01-27 19:14:23 +01:00 |
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dr. M.S. (Matthijs) Berends
|
9a3891efe4
|
(v0.9.0.9014) Machine reading guidelines
|
2020-01-27 11:05:39 +01:00 |
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dr. M.S. (Matthijs) Berends
|
423d1d3c41
|
(v0.9.0.9013) Support for LOINC codes
|
2020-01-26 20:38:54 +01:00 |
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dr. M.S. (Matthijs) Berends
|
449d9bde35
|
(v0.9.0.9012) Support for LOINC codes
|
2020-01-26 20:20:00 +01:00 |
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dr. M.S. (Matthijs) Berends
|
64f5ceef03
|
(v0.9.0.9009) antibiotics data set update
|
2020-01-08 11:30:33 +01:00 |
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dr. M.S. (Matthijs) Berends
|
ced1a7b7fa
|
(v0.9.0.9008) Happy new year! Add lifecycles
|
2020-01-05 17:22:09 +01:00 |
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dr. M.S. (Matthijs) Berends
|
db5dfff0ca
|
(v0.9.0.9006) added CITATION file
|
2019-12-22 11:43:38 +01:00 |
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dr. M.S. (Matthijs) Berends
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ba3ce77f02
|
(v0.9.0.9005) as.mo for G. species
|
2019-12-21 10:56:06 +01:00 |
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dr. M.S. (Matthijs) Berends
|
2db2a2458a
|
(v0.9.0.9003) as.mo() speedup for fullnames
|
2019-12-20 15:05:58 +01:00 |
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dr. M.S. (Matthijs) Berends
|
a7e538e562
|
(v0.9.0) website fixes
|
2019-11-30 13:31:12 +01:00 |
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dr. M.S. (Matthijs) Berends
|
56ce9bf665
|
(v0.9.0) website fixes
|
2019-11-30 12:01:50 +01:00 |
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dr. M.S. (Matthijs) Berends
|
bb2ed55842
|
(v0.9.0) v0.9.0
|
2019-11-29 19:43:23 +01:00 |
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dr. M.S. (Matthijs) Berends
|
9feef53bde
|
(v0.8.0.9037) complete documentation rewrite
|
2019-11-28 23:00:37 +01:00 |
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dr. M.S. (Matthijs) Berends
|
c5f00f4a9f
|
(v0.8.0.9036) complete documentation rewrite
|
2019-11-28 22:32:17 +01:00 |
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dr. M.S. (Matthijs) Berends
|
7c28b392b1
|
(v0.8.0.9035) add more mo codes
|
2019-11-24 22:48:56 +01:00 |
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dr. M.S. (Matthijs) Berends
|
e53cc4990c
|
(v0.8.0.9034) add cid to antivirals
|
2019-11-23 12:39:57 +01:00 |
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dr. M.S. (Matthijs) Berends
|
267320f15f
|
(v0.8.0.9033) antivirals data set, cleanup
|
2019-11-18 12:10:47 +01:00 |
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dr. M.S. (Matthijs) Berends
|
67f3f4387b
|
(v0.8.0.9032) fix regex error
|
2019-11-15 16:50:46 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
09e2730b53
|
(v0.8.0.9031) as.mo() improvements
|
2019-11-15 15:25:03 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
248b45da71
|
(v0.8.0.9030) depend on tidyr >= 1.0.0
|
2019-11-11 10:46:39 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
d22834c5b8
|
(v0.8.0.9029) cleanup
|
2019-11-10 15:50:18 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
54b6322056
|
(v0.8.0.9028) examples fix
|
2019-11-10 13:17:20 +01:00 |
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dr. M.S. (Matthijs) Berends
|
59ededa8dc
|
(v0.8.0.9027) adding susceptibility() and resistance()
|
2019-11-10 12:16:56 +01:00 |
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dr. M.S. (Matthijs) Berends
|
ef640add2d
|
(v0.8.0.9021) update vignettes
|
2019-11-09 11:33:22 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
e2d05cb1b0
|
(v0.8.0.9017) keywords update
|
2019-11-06 14:43:23 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
a1fd2cd98a
|
(v0.8.0.9014) unit test update
|
2019-11-05 22:23:45 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
2560aa1a53
|
(v0.8.0.9013) unit test update
|
2019-11-05 21:52:58 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
5345d2759a
|
(v0.8.0.9012) mdro improvement
|
2019-11-05 11:28:52 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
fe606e287b
|
(v0.8.0.9011) col guess update
|
2019-11-04 12:08:08 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
9060233953
|
(v0.8.0.9010) mdro bug fix
|
2019-11-04 11:35:34 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
0bb531f3e0
|
(v0.8.0.9009) unit test
|
2019-11-03 22:41:29 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
29e448883d
|
(v0.8.0.9008) new verbose mode for MDROs
|
2019-11-03 22:24:42 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
09c4b04cd0
|
(v0.8.0.9007) Enterobacterales order
|
2019-10-30 23:02:50 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
7ff2ad8188
|
(v0.8.0.9006) small typos
|
2019-10-27 00:31:59 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
412077a6f2
|
(v0.8.0.9005) fix unit tests
|
2019-10-26 22:21:26 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
d2e8249edd
|
(v0.8.0.9004) added MDR guideline by Magiorakos et al.
|
2019-10-26 21:56:41 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
c01dc8a5b7
|
(v0.8.0.9003) printing fix for AB columns
|
2019-10-23 15:44:11 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
3e5ab53209
|
(v0.8.0.9002) eucast_rules() fix for S. maltophilia
|
2019-10-23 14:48:25 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
666126cd5e
|
(v0.8.0.9001) guideline text on as.rsi()
|
2019-10-21 14:12:28 +02:00 |
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dr. M.S. (Matthijs) Berends
|
10e6b225e7
|
(v0.7.1.9107) v0.8.0
|
2019-10-15 14:35:23 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
00cdb498a0
|
(v0.7.1.9102) lintr
|
2019-10-11 17:21:02 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
c8f6b97847
|
(v0.7.1.9100) bug_drug speed, MIC levels
|
2019-10-08 22:21:33 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
683d226fd3
|
Update guess_ab_col.R
|
2019-10-08 08:02:19 +00:00 |
|
dr. M.S. (Matthijs) Berends
|
f479dfce60
|
(v0.7.1.9097) mdro() examples fix
|
2019-10-07 14:57:27 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
4e9c4c1b4e
|
(v0.7.1.9096) German guideline for mdro()
|
2019-10-07 14:32:06 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
1e260d85c8
|
(v0.7.1.9095) get_column_abx() fix
|
2019-10-06 22:19:26 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
3d5692219e
|
(v0.7.1.9094) get_column_abx() improvement
|
2019-10-06 21:44:08 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
b6653a620a
|
(v0.7.1.9093) as.ab() fix
|
2019-10-06 21:07:38 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
8bc4081b03
|
(v0.7.1.9092) as.ab() improvements
|
2019-10-04 15:36:12 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
edb599ae0b
|
(v0.7.1.9091) percentage from clean pkg
|
2019-09-30 16:45:36 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
b39e7feae6
|
(v0.7.1.9090) factor levels of mdr_tb
|
2019-09-26 21:58:06 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
b9f01d686e
|
(v0.7.1.9089) eucast file update
|
2019-09-25 22:37:40 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
99d0fe76dd
|
(v0.7.1.9088) bug_drug improvement
|
2019-09-25 15:43:22 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
04cd0d25db
|
(v0.7.1.9087) small fix
|
2019-09-23 23:09:50 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
38336d7408
|
(v0.7.1.9086) small fix
|
2019-09-23 23:00:18 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
ad5f211a8f
|
(v0.7.1.9085) Salmonella fix
|
2019-09-23 21:24:37 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
76dc948067
|
(v0.7.1.9084) CI fix
|
2019-09-23 20:55:54 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
8ce252fbc5
|
(v0.7.1.9083) LIS code improvement
|
2019-09-23 17:32:05 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
a8c6b8f9c4
|
(v0.7.1.9082) CI fix
|
2019-09-23 14:37:24 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
64d9829030
|
(v0.7.1.9081) bug_drug fixes
|
2019-09-23 13:53:50 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
66d405ff57
|
(v0.7.1.9080) new LIS codes
|
2019-09-22 17:19:59 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
57b0bd92a0
|
(v0.7.1.9079) small fixes
|
2019-09-22 12:41:45 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
46b61e9a70
|
(v0.7.1.9078) unit tests
|
2019-09-20 14:50:02 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
40e6b3e8f6
|
(v0.7.1.9077) mo codes fix
|
2019-09-20 14:18:29 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
3596adb295
|
(v0.7.1.9076) mo codes
|
2019-09-20 12:33:05 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
e2aa4f996b
|
(v0.7.1.9075) new microorganism codes
|
2019-09-18 15:46:09 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
f553a08a7b
|
(v0.7.1.9074) CI updates
|
2019-09-16 12:00:56 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
398c5bdc4f
|
(v0.7.1.9073) as.mo() self-learning algorithm
|
2019-09-15 22:57:30 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
cd178ee569
|
(v0.7.1.9072) key_antibiotics() for foreign systems
|
2019-09-12 15:08:53 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
b5d2a08401
|
(v0.7.1.9071) p_symbol()
|
2019-09-03 09:47:39 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
06b6266366
|
(v0.7.1.9070) na.rm for age(), age_groups()
|
2019-09-02 15:17:41 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
c7be72f0ce
|
(v0.7.1.9069) documentation update
|
2019-09-01 13:16:57 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
88ee1b7268
|
(v0.7.1.9068) gramstain to freq()
|
2019-08-30 14:50:56 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
34a82d091e
|
(v0.7.1.9067) honor info
|
2019-08-28 17:12:48 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
e2b78fa428
|
(v0.7.1.9066) bug-drug fix
|
2019-08-27 23:00:00 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
248638ad91
|
(v0.7.1.9065) bug-drug fix
|
2019-08-27 22:41:09 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
f3276592b7
|
(v0.7.1.9064) bug-drug fix
|
2019-08-27 19:15:04 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
93be16484b
|
(v0.7.1.9063) septic_patients -> example_isolates
|
2019-08-27 16:45:42 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
7a6fce4eb8
|
(v0.7.1.9062) mo/ab assignment improvements
|
2019-08-26 16:02:03 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
13d4fef801
|
(v0.7.1.9061) mo_property improvement
|
2019-08-26 10:03:37 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
05dcb43660
|
(v0.7.1.9060) globals
|
2019-08-25 23:25:12 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
e46cb0399f
|
(v0.7.1.9059) bug_drug_combinations
|
2019-08-25 22:53:22 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
7c069145ac
|
(v0.7.1.9058) as.mo() improvement
|
2019-08-20 11:40:54 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
04d49a62af
|
(v0.7.1.9057) get_column_abx() improvement
|
2019-08-15 17:09:27 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
920212e815
|
(v0.7.1.9056) mo and ab subsetting
|
2019-08-14 14:57:06 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
7108454ba5
|
(v0.7.1.9055) algorithm improvements
|
2019-08-13 16:15:08 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
5f2733349e
|
(v0.7.1.9038) mo algorithm inprovements
|
2019-08-12 19:07:15 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
c44c5e3913
|
(v0.7.1.9037) CI and global env fix
|
2019-08-12 15:34:49 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
bd252a2984
|
(v0.7.1.9036) preserve ab/mo classes in subsetting
|
2019-08-12 14:48:09 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
1d423cca89
|
(v0.7.1.9035) cephalosporins and unit tests
|
2019-08-11 19:07:26 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
3f5828e74a
|
(v0.7.1.9034) mo.codes fix for Dracunculus spp.
|
2019-08-09 23:45:26 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
6598c5615d
|
(v0.7.1.9033) 5000 new fungi
|
2019-08-09 23:22:10 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
6a349bf757
|
(v0.7.1.9032) eucast_rules() improvements
|
2019-08-09 14:28:46 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
1ce4b72dd2
|
(v0.7.1.9031) include_unknown for first_isolate()
|
2019-08-08 22:39:42 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
22a206ffd8
|
(v0.7.1.9030) eucast_rules() fix
|
2019-08-08 15:52:07 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
bfa92eb166
|
(v0.7.1.9028) predict update
|
2019-08-07 15:58:32 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
90c874025a
|
(v0.7.1.9027) tibble printing
|
2019-08-07 15:37:39 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
96b334d7cc
|
website update
|
2019-08-06 14:46:30 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
3a1f960f89
|
(v0.7.1.9024) eucast_rules() fix, new MOs
|
2019-08-06 14:39:22 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
85b62aaf8f
|
(v0.7.1.9023) wrong percentage in as.mo()
|
2019-08-04 17:41:12 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
d6ab3896a1
|
(v0.7.1.9021) CI fix for resistance_predict
|
2019-08-04 10:48:41 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
2a62c3d62a
|
(v0.7.1.9018) deps
|
2019-07-30 13:12:40 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
ec0ca20dee
|
(v0.7.1.9017) deps
|
2019-07-29 21:20:26 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
b7e2d7b9b8
|
(v0.7.1.9016) deps
|
2019-07-29 17:34:57 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
240f03a672
|
(v0.7.1.9015) Remove freq()
|
2019-07-29 13:33:48 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
9ac5a34b36
|
(v0.7.1.9014) MO codes update
|
2019-07-16 16:14:11 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
c652c6913f
|
(v0.7.1.9013) guess_mo_ab speed improvement
|
2019-07-11 13:39:18 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
68230d0712
|
(v0.7.1.90012) mo_shortname fix
|
2019-07-10 21:36:51 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
b452de2fe4
|
(v0.7.1.9010) eucast informative text in verbose mode
|
2019-07-09 13:36:03 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
b15d59cf03
|
(v0.7.1.9009) note for WHOCC
|
2019-07-09 11:22:46 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
c57ad26c5b
|
(v0.7.1.9007) mdro update
|
2019-07-04 15:26:07 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
4ff20af123
|
(v0.7.1.9006) new rsi calculations, atc class removal
|
2019-07-02 16:48:52 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
156d550895
|
(v0.7.1.9005) new rsi calculations, atc class removal
|
2019-07-01 14:03:15 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
65c6702b21
|
(v0.7.1.9004) atc class removal
|
2019-06-27 11:57:45 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
453c159eac
|
0.7.1
|
2019-06-23 14:49:17 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
c9156c004a
|
(v0.7.0.9013) mo_synonym fix
|
2019-06-22 14:49:12 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
7094c1f459
|
website update
|
2019-06-16 22:14:43 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
9c39c35f86
|
(v0.7.0.9010) mo_synonyms, plot/barplot fixes
|
2019-06-16 21:42:40 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
980be2b22d
|
(v0.7.0.9009) global note
|
2019-06-13 16:40:35 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
254745061c
|
(v0.7.0.9008) T. vaginalis, rsi_df
|
2019-06-13 14:28:46 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
699e87ab4a
|
(v0.7.0.9007) renamed notes fix
|
2019-06-12 16:08:20 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
44ab53128e
|
(v0.7.0.9006) ab algorithm fix for ATC codes
|
2019-06-11 15:31:32 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
8f674e19bb
|
(v0.7.0.9005) ab algorithm update
|
2019-06-11 14:18:25 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
ec48f1d83b
|
(v0.7.0.9003) scale fix
|
2019-06-08 23:50:06 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
f50d3a5ba1
|
(v0.7.0.9002) scale fix
|
2019-06-08 15:00:28 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
f02679fb63
|
(v0.7.0.9001) new pathovars, small fixes
|
2019-06-07 22:47:37 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
270aa0dd33
|
v0.7.0
|
2019-06-03 17:45:22 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
bd73988f15
|
(v0.6.1.9053) prerelease fixes
|
2019-06-02 19:23:19 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
2667fff8a7
|
(v0.6.1.9050) support staged install
|
2019-06-01 20:40:49 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
a665612cb8
|
(v0.6.1.9049) data creation fix
|
2019-05-31 21:20:16 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
0a6580b4eb
|
(v0.6.1.9047) ggplot fix
|
2019-05-31 20:48:22 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
4ed27c7e7a
|
(v0.6.1.9046) ggplot fix
|
2019-05-31 20:25:57 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
f03f71eced
|
(v0.6.1.9045) age test fix
|
2019-05-31 14:40:15 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
493ae2ba0c
|
(v0.6.1.9044) first_isolate fix for species
|
2019-05-31 14:25:11 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
1f8ee3ec3e
|
(v0.6.1.9043) age doc fix
|
2019-05-30 08:51:38 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
8b5e2b030b
|
added boxplot for (grouped) freq()
|
2019-05-29 19:56:17 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
62e6f41961
|
website update
|
2019-05-29 00:36:48 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
27380fa021
|
fixes for microorganisms.codes
|
2019-05-28 16:50:40 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
7e0e171512
|
website update
|
2019-05-23 19:39:07 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
3688fcaabf
|
doc fix
|
2019-05-23 17:59:43 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
bbf8b611e3
|
doc fix
|
2019-05-23 17:35:58 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
60983a1640
|
added mdr_tb()
|
2019-05-23 16:58:59 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
07d26cd485
|
faster determination of abx
|
2019-05-20 19:12:41 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
6eb08a2ea3
|
new git flow to repository
|
2019-05-20 14:16:53 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
4ca00e1868
|
speed improvement eucast_rules(), support more old MO codes
|
2019-05-20 12:00:18 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
b0033dae1b
|
website update
|
2019-05-17 20:22:04 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
c3ae6b7699
|
freq fix
|
2019-05-17 09:09:18 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
5eda991c47
|
ab_info fix
|
2019-05-16 22:07:31 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
4c3cf85a65
|
ab_info, other bug fixes
|
2019-05-16 21:20:00 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
f6bf54b37d
|
documentation fix
|
2019-05-13 20:16:51 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
2ea0c93e44
|
documentation fix
|
2019-05-13 16:35:48 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
cc403169c6
|
first isolate missing dates fix
|
2019-05-13 14:56:23 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
0dc0715dc6
|
CI tests
|
2019-05-13 12:21:57 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
38a4421450
|
CI tests
|
2019-05-13 10:10:16 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
fcc77164e9
|
mdro fix
|
2019-05-11 23:30:10 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
68cc7ef0d0
|
new antibiotics
|
2019-05-10 16:44:59 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
73f1ee1159
|
freq/age fix
|
2019-04-11 00:54:48 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
461eec9bac
|
cfta streptococci, codecov.yml
|
2019-04-09 14:59:17 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
cffb7787d8
|
cfta streptococci
|
2019-04-09 10:34:40 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
30b559827c
|
documentation update
|
2019-04-07 22:40:02 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
51fdc5d6cc
|
self-learning off
|
2019-04-06 09:38:23 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
fbc9191b13
|
new EUCAST rules algorithm
|
2019-04-05 18:47:39 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
56d4b4719f
|
ci for devel and freq fix
|
2019-03-29 21:45:46 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
7dca9791a2
|
v0.6.1
|
2019-03-28 22:30:19 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
713290a9a6
|
v0.6.1
|
2019-03-28 22:05:03 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
b25f2d6213
|
v0.6.1
|
2019-03-28 21:33:28 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
8a1d384d9c
|
ci fixes
|
2019-03-26 15:34:04 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
afd12d5486
|
ci fixes
|
2019-03-26 14:42:56 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
29f444543d
|
added Becker 2019
|
2019-03-26 14:24:03 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
c6a12266e7
|
DSMZ data
|
2019-03-18 14:29:41 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
b561de462a
|
global var
|
2019-03-15 20:15:56 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
e18a1f1f17
|
as.mo improvement
|
2019-03-15 17:36:42 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
fdffc2791b
|
memory for as.mo()
|
2019-03-15 13:57:25 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
504a042fba
|
uncertainty levels, new WHONET codes
|
2019-03-12 12:19:27 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
b319b89750
|
WHONET fix
|
2019-03-09 08:21:00 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
0c0c6e289b
|
small as.mo fix
|
2019-03-06 14:39:02 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
5c7a061a5d
|
filter_ab_class fix
|
2019-03-06 09:32:48 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
74e0ae21fd
|
con WHONET, filter ab class
|
2019-03-05 22:47:42 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
e835525cf6
|
unknown codes, rsi fix
|
2019-03-02 22:47:04 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
c5efb272fd
|
mo_source improvement
|
2019-03-01 09:34:04 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
2565b60024
|
rlang dependency, new fungi
|
2019-02-28 13:56:28 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
cf3bdb54c7
|
global var fix
|
2019-02-27 19:02:47 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
95c49fdf79
|
global var fix
|
2019-02-27 17:39:39 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
642f6571fe
|
as.mo fix
|
2019-02-27 14:22:07 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
54162522bd
|
age_groups fix
|
2019-02-27 11:36:12 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
4ba2ff68e0
|
language fix
|
2019-02-26 13:02:04 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
f9ded23023
|
as.mo improvement
|
2019-02-26 12:33:26 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
f25a4b3679
|
as.mo improvements
|
2019-02-25 16:07:21 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
c506d2893b
|
as.mo improvements
|
2019-02-25 15:52:32 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
0ec76cfa98
|
as.mo improvement
|
2019-02-25 10:42:57 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
e65d1a3036
|
as.mo improvement
|
2019-02-23 21:49:02 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
f16a152d06
|
as.mo improvements
|
2019-02-23 18:08:28 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
1a6314769b
|
as.mo improvement
|
2019-02-23 16:02:31 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
41ad7a22c8
|
mo_rank mo_url, added Tremellales
|
2019-02-22 22:12:10 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
6c542268be
|
unit tests
|
2019-02-21 23:32:30 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
68a9a35ed6
|
algorithm update
|
2019-02-21 18:55:52 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
13120f465f
|
website update
|
2019-02-20 13:57:23 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
8dc027309e
|
website update
|
2019-02-20 10:38:24 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
fb1fc3686c
|
Catalogue of life
|
2019-02-20 00:04:48 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
54f8258f8c
|
Catalogue of Life, replaces ITIS
|
2019-02-18 02:33:37 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
efb2af9e3a
|
benchmarks plots
|
2019-02-14 10:23:51 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
ae44b185e6
|
fix freq length calculation
|
2019-02-13 17:14:59 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
30ff770c93
|
freq update
|
2019-02-12 15:38:31 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
76ed26d27e
|
resistance predict update
|
2019-02-11 10:27:10 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
c56b179857
|
as.rsi warning, site update
|
2019-02-09 22:16:24 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
ed30312048
|
mo codes for WHONET
|
2019-02-08 16:06:54 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
3d3366faf7
|
is.rsi.eligible update
|
2019-02-04 18:04:29 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
587e00b7be
|
is.rsi.eligible update
|
2019-02-04 12:24:07 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
cd07d65734
|
freq and website update
|
2019-02-01 16:55:55 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
d75ec01f92
|
website update
|
2019-01-30 19:52:58 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
0b3dc0231f
|
freq fix
|
2019-01-30 16:00:55 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
e6489483c7
|
website update
|
2019-01-29 20:38:45 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
3efb54d016
|
freq update
|
2019-01-29 20:20:09 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
6aae206320
|
WHONET/EARS-Net support
|
2019-01-29 00:06:50 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
f6336fdd89
|
quasiquotation for freq()
|
2019-01-28 11:20:32 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
63e343d555
|
deps fix
|
2019-01-27 20:49:11 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
e76961a66b
|
less deps
|
2019-01-27 19:30:40 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
a2d3ea280a
|
text updates
|
2019-01-27 13:55:23 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
18b75356a9
|
re-add atc_ddd and atc_groups
|
2019-01-27 13:33:43 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
6ec940bc75
|
atc_ functions
|
2019-01-27 10:53:59 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
b39055c018
|
deprecated fix
|
2019-01-27 00:33:58 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
f836722269
|
atc_ functions
|
2019-01-26 23:22:56 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
5493e1f05d
|
website update
|
2019-01-25 20:47:57 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
f4ff98b470
|
WHO update, antibiotics update
|
2019-01-25 13:18:41 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
9529d097b6
|
as.mo
|
2019-01-21 21:24:40 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
46dcc7e2e8
|
set_mo_source
|
2019-01-21 15:53:01 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
c6c3088e9f
|
select() fix for freq
|
2019-01-17 12:08:04 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
1ee710c861
|
resistance predict
|
2019-01-15 16:51:49 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
8db87a15e9
|
fixes
|
2019-01-15 16:38:54 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
046d195064
|
resistance predict
|
2019-01-15 12:45:24 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
cda7087722
|
website update
|
2019-01-12 19:31:30 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
3661df7365
|
direct warning if failing as.mo
|
2019-01-12 16:45:20 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
5aad26035c
|
edited g.test
|
2019-01-12 11:06:58 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
641d866db2
|
guess_ab_col, benchmarks
|
2019-01-11 20:37:23 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
193a2d2863
|
EUCAST update, as.mo bugfix for empty vlaues
|
2019-01-08 16:23:45 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
bc15f660d6
|
guess_ab()
|
2019-01-06 20:23:49 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
0205b6178d
|
guess_mo deprecation
|
2019-01-06 16:40:55 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
2c798547bf
|
language
|
2019-01-05 21:40:04 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
6652f7d82b
|
fix warnings
|
2019-01-04 09:49:42 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
80ea555663
|
guess_ab
|
2019-01-03 23:56:19 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
6b2d464f8c
|
big website update, licence txt update
|
2019-01-02 23:24:07 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
68baf058cd
|
website update
|
2018-12-31 10:35:26 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
2e4d703338
|
eucast rules fix, 1st isolate fix, website update
|
2018-12-31 01:48:53 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
92a32b62a7
|
new website, freq updates
|
2018-12-29 22:24:19 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
0b8084871d
|
dplyr 0.8.0 support, fixes #7
|
2018-12-22 22:39:34 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
b937662a97
|
limits for scale_y_percent - Licence update
|
2018-12-16 22:45:12 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
bd5f46d734
|
age_groups fix
|
2018-12-16 09:50:14 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
2018d5b477
|
age and age_groups
|
2018-12-15 22:40:07 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
ecebc60bfd
|
C stack error fix
|
2018-12-14 11:44:15 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
857f565db0
|
reorganised notes and warnings
|
2018-12-14 10:52:20 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
dec4947103
|
freq header fix for NAs
|
2018-12-14 10:08:51 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
e4737d3add
|
date transformation fix for tibbles
|
2018-12-14 09:31:53 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
7e5fe75a17
|
small text fixes
|
2018-12-14 07:48:12 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
81af7be36e
|
note about portions
|
2018-12-14 07:23:25 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
01a6d56334
|
add kingdom to mo_taxonomy
|
2018-12-10 21:47:25 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
5ab7eb07bc
|
keyab automatic
|
2018-12-10 15:14:29 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
9478ab71be
|
freq - decimals
|
2018-12-10 10:13:40 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
8e8a9cd190
|
AI improvements
|
2018-12-07 12:04:55 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
74a7f4453b
|
small CI fix
|
2018-12-06 16:07:06 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
60fe98bbbd
|
better as.mo handling
|
2018-12-06 14:36:39 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
31e977937d
|
fix for as.mo and freq
|
2018-11-30 12:05:59 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
9ddf6dc530
|
support A. species for as.mo, cleanup
|
2018-11-24 20:25:09 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
63ba4b2980
|
small error in freq
|
2018-11-19 13:06:07 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
a8132922af
|
unit test read.4d, unselecting freq cols
|
2018-11-19 13:00:22 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
83c7da85ab
|
unit tests
|
2018-11-16 22:28:55 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
d22b7f00da
|
unit tests
|
2018-11-16 22:22:42 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
373e0cb32f
|
unit test fail
|
2018-11-16 21:57:55 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
4fcc2b409a
|
MDRO update
|
2018-11-16 20:50:50 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
fab64e6728
|
read.4D improvements
|
2018-11-15 12:42:35 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
5cb8f3cf72
|
get_locale improvement
|
2018-11-12 15:07:43 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
6b0f4ffbd4
|
new kingdom
|
2018-11-09 13:11:54 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
9be5e0318b
|
freq: fix na.rm in groups
|
2018-11-08 16:10:03 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
84e08f516a
|
grouping var for freq
|
2018-11-06 16:41:59 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
ee664f2a4c
|
small fix
|
2018-11-05 15:36:07 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
d15bb2ab3f
|
read_4D
|
2018-11-05 15:30:49 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
d07e9b904e
|
new function get_locale
|
2018-11-05 13:20:32 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
d0bc05e5b1
|
speed improvement is.rsi.eligible
|
2018-11-02 14:55:29 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
40a159e78d
|
more unit tests
|
2018-11-02 10:27:57 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
e601fd259a
|
test syntax fix
|
2018-11-01 20:50:10 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
5476fecc73
|
eucast update
|
2018-11-01 20:23:33 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
f7687557c9
|
eucast updates
|
2018-11-01 17:06:08 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
9cd4ab928a
|
speed improvement as.mo, freq title
|
2018-10-31 12:10:49 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
1bf8dc2983
|
as.mo speedup: assigned to namespace
|
2018-10-29 17:26:17 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
707aa20a37
|
fixes
|
2018-10-23 14:59:36 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
7997de6a6d
|
mdro and 1st isolate improvements
|
2018-10-23 11:15:05 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
299c5bea43
|
na freq, removed factors
|
2018-10-23 09:42:26 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
9c56257da1
|
freq - print title bold in markdown
|
2018-10-22 13:06:54 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
c2a93b46db
|
breaks param, tidyr dep change, freq markdown
|
2018-10-22 12:32:59 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
ec15b82fd6
|
param header for freq
|
2018-10-19 21:52:08 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
86b03577a7
|
fix for as.mo, added also_single_tested
|
2018-10-19 13:53:31 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
032c0d51ef
|
better verbose in EUCAST
|
2018-10-19 00:57:10 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
b464dd524a
|
new verbose
|
2018-10-19 00:17:03 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
0ef91be3ac
|
param rules for EUCAST
|
2018-10-18 12:10:10 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
693f64bdbf
|
new EUCAST rules: clinical breakpoints
|
2018-10-17 17:32:34 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
d5a41de711
|
parameter combine_IR
|
2018-10-16 09:59:31 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
5b5b95a47b
|
count_all and some fixes
|
2018-10-12 16:35:18 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
e7d937d36e
|
update NEWS
|
2018-10-10 10:50:19 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
67521394f6
|
more unit tests
|
2018-10-09 15:41:44 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
95c9fdc552
|
CRAN fixes for release 0.4.0
https://cran.r-project.org/web/checks/check_results_AMR.html
|
2018-10-09 13:53:33 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
6d761436f7
|
benchmarks on readme and speed improvement for direct mo codes
|
2018-10-01 16:26:02 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
ed17db0263
|
renamed year columns to ref
|
2018-10-01 14:44:40 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
3119a221e5
|
authors from ITIS, diff for freq
|
2018-10-01 11:39:43 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
92c9cc2608
|
diff for freq, fix for mo_shortname
|
2018-09-29 21:54:32 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
a6aa9e95fb
|
completed old taxonomic names
|
2018-09-28 20:13:13 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
768fe17324
|
removed clipboard functions as it violated CRAN policies
|
2018-09-28 16:05:18 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
2b0080995e
|
speed improvement for as.mo, more old taxonomic names
|
2018-09-27 23:23:48 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
450992baea
|
new: 1680 old taxonomic names
|
2018-09-25 16:44:40 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
9c566585b0
|
first inclusion of ITIS data
|
2018-09-24 23:33:29 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
5d80cef338
|
added taxonomic data from ITIS
|
2018-09-17 20:53:32 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
7680e4edd8
|
add shortest and longest to freq for characters
|
2018-09-17 09:42:09 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
db14781593
|
add labels_rsi_count
|
2018-09-16 22:11:17 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
b792a2754e
|
added prevalence column and alterted as.mo algorith to use it, added ab_name as alias
|
2018-09-16 16:43:29 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
b0ca49d68d
|
small improvement for is.rsi.eligible, more unit tests
|
2018-09-14 11:54:01 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
cf5711fb0b
|
algorithm improvement
|
2018-09-14 10:31:21 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
d049ec9e69
|
ggplot2_rsi fix
|
2018-09-13 14:48:34 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
cb0d74a4f0
|
support for French and Italian, added quote to freq
|
2018-09-10 15:45:25 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
b83e6a9380
|
algoritm improvement, removed all Catabacter except for C. hongkongensis
|
2018-09-10 11:40:54 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
4816419f0c
|
AI improvements for microorganisms
|
2018-09-09 12:11:44 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
936198372e
|
translate CoNS
|
2018-09-08 16:24:12 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
26f5be0033
|
support for portuguese, language determination based on system
|
2018-09-08 16:06:47 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
c5073f2fd1
|
small fix for microorganisms data set
|
2018-09-06 16:50:03 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
de36b0be23
|
fix for empty values in mo_property
|
2018-09-05 12:21:27 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
e39a9a8b05
|
added mo_shortname
|
2018-09-05 10:51:46 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
790bd1622d
|
added vanA to vanE positive Enterococci
|
2018-09-05 09:49:19 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
b388e3fee7
|
Support for German and Spanish microorganism properties, cleanup
|
2018-09-04 11:33:30 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
e25dd0e282
|
fix for joins
|
2018-09-03 10:04:49 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
75fe4d401f
|
new MOs, cleanup
|
2018-09-01 21:19:46 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
5965d3c794
|
replaced bactid by mo
|
2018-08-31 13:36:19 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
98ff131680
|
support for older versions of ggplot2
|
2018-08-29 16:39:28 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
d654444c8e
|
re added nrow
|
2018-08-29 16:35:32 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
d9e68e0a50
|
ggplot_rsi example update, more unit tests
|
2018-08-29 16:25:57 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
029157b3be
|
163 new trade names, added ab_tradenames
|
2018-08-29 12:27:37 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
972fc4f6c7
|
ab_* functions, mo_* functions, 180 new microorganisms, speed improvement for bactid
|
2018-08-28 13:51:13 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
2acdb1981c
|
atc and bactid functions, readme update
|
2018-08-25 22:01:14 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
baaf4cc3e1
|
few extra tests
|
2018-08-24 14:18:38 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
a100d07da6
|
removed ratio, better rsi_calc, update for freq
|
2018-08-24 11:08:20 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
febd0ca885
|
geom_rsi - any parameter
|
2018-08-23 21:27:15 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
da5379c881
|
quasiquotation, alpha for geom_rsi
|
2018-08-23 00:40:36 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
3e87c8f409
|
count_* functions
|
2018-08-22 00:02:26 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
59ce1eb1b1
|
ggplot_rsi improvements
|
2018-08-13 16:42:37 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
dba06c3295
|
abname improvement, small fixes
|
2018-08-13 11:00:53 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
ce2cdb9309
|
support groups for portion_df, update README
|
2018-08-12 22:34:03 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
e5d32cafe0
|
new unit tests for ggplot, small fixes
|
2018-08-12 17:44:06 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
1ba7d883fe
|
new ggplot enhancement
|
2018-08-11 21:30:00 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
53fa198e35
|
new portion functions
|
2018-08-10 15:01:05 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
ae2433a020
|
rsi family for resistance analysis
|
2018-08-03 14:49:29 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
227121af3d
|
add Dialister to microorganisms
|
2018-08-03 11:46:06 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
db5a0d32a5
|
typos of Becker algorithm
|
2018-08-03 10:58:48 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
bd9bcfef78
|
thesis advisors
|
2018-08-03 09:59:39 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
6262315527
|
Becker classification
Lancefield classification
Added Lancefield groups to `microorganisms` data set
|
2018-08-02 13:15:45 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
edd2dd09dc
|
rsi for freq
|
2018-08-01 22:37:28 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
d8f70a74de
|
clipboard error
|
2018-08-01 10:32:24 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
a59d0661f7
|
check CMD error
|
2018-08-01 09:45:11 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
7c667eb732
|
emph guess_bactid
|
2018-08-01 08:03:31 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
211e3bae14
|
remove reshape2 dependency
|
2018-07-30 01:18:40 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
510e8f22aa
|
more unit tests
|
2018-07-30 00:57:49 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
d0a115d995
|
bactid speed improvement
|
2018-07-30 00:14:06 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
826694323b
|
new functions R, RI, SI, S
|
2018-07-29 22:14:51 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
8421e3f005
|
more mic classes
|
2018-07-28 10:48:27 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
feab1cad6b
|
small fixes
|
2018-07-28 09:34:03 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
498e88b5cf
|
improvement for forecasting resistance
|
2018-07-26 16:30:42 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
d9e204031d
|
update to septic_patients, speed improvements
|
2018-07-25 14:17:04 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
03a3cb397b
|
clipboard update
|
2018-07-23 15:09:19 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
8421638b60
|
new class bactid
|
2018-07-23 14:14:03 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
9920ac8a5c
|
fix for keyab, more examples
|
2018-07-23 10:35:39 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
ad662d7bab
|
new col names for `key_antibiotics`
|
2018-07-19 15:11:23 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
0d64c166f0
|
keyab fixes
|
2018-07-17 19:51:09 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
2a4d759fbc
|
check fails
|
2018-07-17 14:48:11 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
5cb9c541f8
|
new algorithm key abs
|
2018-07-17 13:02:05 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
a5a4354651
|
speed improvements
|
2018-07-17 10:32:26 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
715a7630ca
|
support format.freq
|
2018-07-16 16:41:48 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
6eaf33baf3
|
speed improvements
|
2018-07-15 22:56:41 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
b6655f6454
|
Welcome C++!
|
2018-07-13 17:23:46 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
a28289562a
|
remove print function, out of scope
|
2018-07-11 20:12:19 +02:00 |