 dr. M.S. (Matthijs) Berends
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e2b78fa428
|
(v0.7.1.9066) bug-drug fix
|
2019-08-27 23:00:00 +02:00 |
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dr. M.S. (Matthijs) Berends
|
93be16484b
|
(v0.7.1.9063) septic_patients -> example_isolates
|
2019-08-27 16:45:42 +02:00 |
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dr. M.S. (Matthijs) Berends
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7a6fce4eb8
|
(v0.7.1.9062) mo/ab assignment improvements
|
2019-08-26 16:02:03 +02:00 |
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dr. M.S. (Matthijs) Berends
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e46cb0399f
|
(v0.7.1.9059) bug_drug_combinations
|
2019-08-25 22:53:22 +02:00 |
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dr. M.S. (Matthijs) Berends
|
04d49a62af
|
(v0.7.1.9057) get_column_abx() improvement
|
2019-08-15 17:09:27 +02:00 |
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dr. M.S. (Matthijs) Berends
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7108454ba5
|
(v0.7.1.9055) algorithm improvements
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2019-08-13 16:15:08 +02:00 |
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dr. M.S. (Matthijs) Berends
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6c4822164c
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Merge branch 'premaster'
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2019-08-12 19:32:30 +02:00 |
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dr. M.S. (Matthijs) Berends
|
5f2733349e
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(v0.7.1.9038) mo algorithm inprovements
|
2019-08-12 19:07:15 +02:00 |
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dr. M.S. (Matthijs) Berends
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bd252a2984
|
(v0.7.1.9036) preserve ab/mo classes in subsetting
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2019-08-12 14:48:09 +02:00 |
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dr. M.S. (Matthijs) Berends
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990709c151
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Merge branch 'premaster'
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2019-08-11 22:23:18 +02:00 |
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dr. M.S. (Matthijs) Berends
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1d423cca89
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(v0.7.1.9035) cephalosporins and unit tests
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2019-08-11 19:07:26 +02:00 |
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dr. M.S. (Matthijs) Berends
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b790030c5f
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Merge branch 'premaster'
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2019-08-09 09:33:26 +02:00 |
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dr. M.S. (Matthijs) Berends
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1ce4b72dd2
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(v0.7.1.9031) include_unknown for first_isolate()
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2019-08-08 22:39:42 +02:00 |
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dr. M.S. (Matthijs) Berends
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43e81bda75
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(v0.7.1.9029) unit test
Merge branch 'premaster'
# Conflicts:
# tests/testthat/test-resistance_predict.R
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2019-08-07 19:22:46 +02:00 |
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dr. M.S. (Matthijs) Berends
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f67c739892
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(v0.7.1.9029) unit test
|
2019-08-07 18:56:14 +02:00 |
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dr. M.S. (Matthijs) Berends
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e5cc09dbc0
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Merge branch 'premaster'
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2019-08-07 16:27:37 +02:00 |
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dr. M.S. (Matthijs) Berends
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90c874025a
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(v0.7.1.9027) tibble printing
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2019-08-07 15:37:39 +02:00 |
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dr. M.S. (Matthijs) Berends
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3e9a263fc4
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Merge branch 'master' of https://gitlab.com/msberends/AMR
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2019-08-06 16:16:57 +02:00 |
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dr. M.S. (Matthijs) Berends
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3a1f960f89
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(v0.7.1.9024) eucast_rules() fix, new MOs
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2019-08-06 14:39:22 +02:00 |
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dr. M.S. (Matthijs) Berends
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f404db85d4
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Merge branch 'premaster' of https://gitlab.com/msberends/AMR into premaster
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2019-08-04 13:32:36 +02:00 |
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dr. M.S. (Matthijs) Berends
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d6ab3896a1
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(v0.7.1.9021) CI fix for resistance_predict
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2019-08-04 10:48:41 +02:00 |
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dr. M.S. (Matthijs) Berends
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b730920bb3
|
Merge branch 'premaster' of https://gitlab.com/msberends/AMR into premaster
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2019-07-29 23:48:34 +02:00 |
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dr. M.S. (Matthijs) Berends
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240f03a672
|
(v0.7.1.9015) Remove freq()
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2019-07-29 13:33:48 +02:00 |
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dr. M.S. (Matthijs) Berends
|
7bd29cb8ef
|
codecov update
|
2019-07-11 16:08:56 +02:00 |
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dr. M.S. (Matthijs) Berends
|
68230d0712
|
(v0.7.1.90012) mo_shortname fix
|
2019-07-10 21:36:51 +02:00 |
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dr. M.S. (Matthijs) Berends
|
a56a87c7db
|
quickfix
|
2019-07-09 20:26:42 +02:00 |
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dr. M.S. (Matthijs) Berends
|
c57ad26c5b
|
(v0.7.1.9007) mdro update
|
2019-07-04 15:26:07 +02:00 |
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dr. M.S. (Matthijs) Berends
|
4ff20af123
|
(v0.7.1.9006) new rsi calculations, atc class removal
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2019-07-02 16:48:52 +02:00 |
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dr. M.S. (Matthijs) Berends
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156d550895
|
(v0.7.1.9005) new rsi calculations, atc class removal
|
2019-07-01 14:03:15 +02:00 |
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dr. M.S. (Matthijs) Berends
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65c6702b21
|
(v0.7.1.9004) atc class removal
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2019-06-27 11:57:45 +02:00 |
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dr. M.S. (Matthijs) Berends
|
b94638d53e
|
(v0.7.0.9014) unit tests
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2019-06-22 20:14:06 +02:00 |
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dr. M.S. (Matthijs) Berends
|
c9156c004a
|
(v0.7.0.9013) mo_synonym fix
|
2019-06-22 14:49:12 +02:00 |
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dr. M.S. (Matthijs) Berends
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9c39c35f86
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(v0.7.0.9010) mo_synonyms, plot/barplot fixes
|
2019-06-16 21:42:40 +02:00 |
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dr. M.S. (Matthijs) Berends
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254745061c
|
(v0.7.0.9008) T. vaginalis, rsi_df
|
2019-06-13 14:28:46 +02:00 |
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dr. M.S. (Matthijs) Berends
|
8f674e19bb
|
(v0.7.0.9005) ab algorithm update
|
2019-06-11 14:18:25 +02:00 |
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dr. M.S. (Matthijs) Berends
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ec48f1d83b
|
(v0.7.0.9003) scale fix
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2019-06-08 23:50:06 +02:00 |
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dr. M.S. (Matthijs) Berends
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f02679fb63
|
(v0.7.0.9001) new pathovars, small fixes
|
2019-06-07 22:47:37 +02:00 |
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dr. M.S. (Matthijs) Berends
|
270aa0dd33
|
v0.7.0
|
2019-06-03 17:45:22 +02:00 |
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dr. M.S. (Matthijs) Berends
|
bd73988f15
|
(v0.6.1.9053) prerelease fixes
|
2019-06-02 19:23:19 +02:00 |
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dr. M.S. (Matthijs) Berends
|
5608b27c7c
|
(v0.6.1.9051) support staged install
|
2019-06-01 20:54:56 +02:00 |
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dr. M.S. (Matthijs) Berends
|
4bac768557
|
(v0.6.1.9048) data creation fox
|
2019-05-31 21:01:14 +02:00 |
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dr. M.S. (Matthijs) Berends
|
0a6580b4eb
|
(v0.6.1.9047) ggplot fix
|
2019-05-31 20:48:22 +02:00 |
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dr. M.S. (Matthijs) Berends
|
4ed27c7e7a
|
(v0.6.1.9046) ggplot fix
|
2019-05-31 20:25:57 +02:00 |
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dr. M.S. (Matthijs) Berends
|
f03f71eced
|
(v0.6.1.9045) age test fix
|
2019-05-31 14:40:15 +02:00 |
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dr. M.S. (Matthijs) Berends
|
493ae2ba0c
|
(v0.6.1.9044) first_isolate fix for species
|
2019-05-31 14:25:11 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
8b5e2b030b
|
added boxplot for (grouped) freq()
|
2019-05-29 19:56:17 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
27380fa021
|
fixes for microorganisms.codes
|
2019-05-28 16:50:40 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
60983a1640
|
added mdr_tb()
|
2019-05-23 16:58:59 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
07d26cd485
|
faster determination of abx
|
2019-05-20 19:12:41 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
4ca00e1868
|
speed improvement eucast_rules(), support more old MO codes
|
2019-05-20 12:00:18 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
4c3cf85a65
|
ab_info, other bug fixes
|
2019-05-16 21:20:00 +02:00 |
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dr. M.S. (Matthijs) Berends
|
f6bf54b37d
|
documentation fix
|
2019-05-13 20:16:51 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
cc403169c6
|
first isolate missing dates fix
|
2019-05-13 14:56:23 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
c4aa92b4a7
|
fixed unit test
|
2019-05-13 13:03:30 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
0dc0715dc6
|
CI tests
|
2019-05-13 12:21:57 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
38a4421450
|
CI tests
|
2019-05-13 10:10:16 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
68cc7ef0d0
|
new antibiotics
|
2019-05-10 16:44:59 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
461eec9bac
|
cfta streptococci, codecov.yml
|
2019-04-09 14:59:17 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
fbc9191b13
|
new EUCAST rules algorithm
|
2019-04-05 18:47:39 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
713290a9a6
|
v0.6.1
|
2019-03-28 22:05:03 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
b25f2d6213
|
v0.6.1
|
2019-03-28 21:33:28 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
8a1d384d9c
|
ci fixes
|
2019-03-26 15:34:04 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
afd12d5486
|
ci fixes
|
2019-03-26 14:42:56 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
29f444543d
|
added Becker 2019
|
2019-03-26 14:24:03 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
c6a12266e7
|
DSMZ data
|
2019-03-18 14:29:41 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
e18a1f1f17
|
as.mo improvement
|
2019-03-15 17:36:42 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
fdffc2791b
|
memory for as.mo()
|
2019-03-15 13:57:25 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
504a042fba
|
uncertainty levels, new WHONET codes
|
2019-03-12 12:19:27 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
74e0ae21fd
|
con WHONET, filter ab class
|
2019-03-05 22:47:42 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
e835525cf6
|
unknown codes, rsi fix
|
2019-03-02 22:47:04 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
2565b60024
|
rlang dependency, new fungi
|
2019-02-28 13:56:28 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
cf3bdb54c7
|
global var fix
|
2019-02-27 19:02:47 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
95c49fdf79
|
global var fix
|
2019-02-27 17:39:39 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
54162522bd
|
age_groups fix
|
2019-02-27 11:36:12 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
7f155c4e3a
|
small units test
|
2019-02-22 00:19:37 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
6c542268be
|
unit tests
|
2019-02-21 23:32:30 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
bd2a256969
|
unit test
|
2019-02-21 19:15:17 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
68a9a35ed6
|
algorithm update
|
2019-02-21 18:55:52 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
c6e57ca456
|
website update
|
2019-02-20 14:18:11 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
616c8ab1ae
|
mo_property
|
2019-02-20 00:34:38 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
d4f5d282ff
|
appveyor fix
|
2019-02-20 00:25:06 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
54f8258f8c
|
Catalogue of Life, replaces ITIS
|
2019-02-18 02:33:37 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
ed30312048
|
mo codes for WHONET
|
2019-02-08 16:06:54 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
587e00b7be
|
is.rsi.eligible update
|
2019-02-04 12:24:07 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
6aae206320
|
WHONET/EARS-Net support
|
2019-01-29 00:06:50 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
f6336fdd89
|
quasiquotation for freq()
|
2019-01-28 11:20:32 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
f836722269
|
atc_ functions
|
2019-01-26 23:22:56 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
f4ff98b470
|
WHO update, antibiotics update
|
2019-01-25 13:18:41 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
46dcc7e2e8
|
set_mo_source
|
2019-01-21 15:53:01 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
046d195064
|
resistance predict
|
2019-01-15 12:45:24 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
5aad26035c
|
edited g.test
|
2019-01-12 11:06:58 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
641d866db2
|
guess_ab_col, benchmarks
|
2019-01-11 20:37:23 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
0205b6178d
|
guess_mo deprecation
|
2019-01-06 16:40:55 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
80ea555663
|
guess_ab
|
2019-01-03 23:56:19 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
6b2d464f8c
|
big website update, licence txt update
|
2019-01-02 23:24:07 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
2e4d703338
|
eucast rules fix, 1st isolate fix, website update
|
2018-12-31 01:48:53 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
48f097c5b2
|
roxygen2 dep
|
2018-12-30 09:31:54 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
92a32b62a7
|
new website, freq updates
|
2018-12-29 22:24:19 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
0b8084871d
|
dplyr 0.8.0 support, fixes #7
|
2018-12-22 22:39:34 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
b937662a97
|
limits for scale_y_percent - Licence update
|
2018-12-16 22:45:12 +01:00 |