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Commit Graph

185 Commits

Author SHA1 Message Date
e5e6d2200d fix add manual ab 2022-10-18 22:53:38 +02:00
Dr. Matthijs Berends
cd2acc4a29
New mo algorithm, prepare for 2.0 2022-10-05 09:12:22 +02:00
3fca703fbf new AMR distance function 2022-08-30 21:48:02 +02:00
fbd5d32541 small fixes 2022-08-29 09:35:36 +02:00
e7af5fc716 fix AMR vignette 2022-08-28 22:38:08 +02:00
2ed5f13880 Fixes #57 2022-08-28 21:13:26 +02:00
1e4eaf23f2 unit tests 2022-08-28 20:49:04 +02:00
21b4552f5a unit test fix 2022-08-28 20:10:05 +02:00
c44ddf272f fix for R <= 3.3 2022-08-28 19:34:04 +02:00
71db246d5c unit test fix 2022-08-28 19:17:12 +02:00
Dr. Matthijs Berends
0d67db4f32
Update check.yaml 2022-08-28 16:03:23 +02:00
Dr. Matthijs Berends
95f9563f58
Update check.yaml 2022-08-28 13:42:16 +02:00
Dr. Matthijs Berends
1a9bac8c64
Update check.yaml 2022-08-28 13:32:26 +02:00
Dr. Matthijs Berends
40d9658e06
Update check.yaml 2022-08-28 11:22:40 +02:00
4d050aef7c styled, unit test fix 2022-08-28 10:31:50 +02:00
164886f50b new workflow files 2022-08-26 23:25:37 +02:00
3864ab2fb8 Feather and Parquet files 2022-08-26 22:25:15 +02:00
4da32e3d40 set up Git LFS for large files 2022-08-26 14:02:08 +02:00
e05d0365a9 website update 2022-08-25 19:19:16 +02:00
5501cffbb0 website update 2022-08-25 19:18:48 +02:00
d3000a9492 website update 2022-08-25 19:16:16 +02:00
2cbce2cefa website update 2022-08-25 19:14:07 +02:00
bdbc112f99 website update 2022-08-21 17:22:34 +02:00
952d16de33 new, automated website 2022-08-21 16:37:20 +02:00
7226b70c3d update languages 2022-08-20 20:17:14 +02:00
4754848e96 (v1.8.1.9001) update unit tests, fixes #53 2022-04-08 11:02:45 +02:00
25cef46c59 (v1.8.0) prerelease 1.8.0 2021-12-23 18:56:28 +01:00
ed22b83c28 fix macOS r-lib/actions unit test 2021-12-22 09:44:10 +01:00
f90e27c1b0 (v1.7.1.9069) CLSI 2021 support 2021-12-12 11:36:58 +01:00
37e6e35ec4 (v1.7.1.9051) updated taxonomy, updated git branch name 2021-10-06 13:23:57 +02:00
2bcf28281d (v1.7.1.9049) unit tests 2021-10-05 09:58:08 +02:00
dr. M.S. (Matthijs) Berends
7a0ecd6c3b
No vignettes on old R unit tests 2021-10-03 23:49:46 +02:00
9b97233be2 (v1.7.1.9046) unit tests 2021-10-03 13:50:52 +02:00
b0c84cce9c (v1.7.1.9045) unit tests 2021-09-29 20:24:02 +02:00
557ce74fd7 (v1.7.1.9044) unit tests 2021-09-29 20:13:52 +02:00
45f597cac5 (v1.7.1.9043) unit tests 2021-09-29 20:10:44 +02:00
0775802b7f check file 2021-09-29 16:43:05 +02:00
e8d3ce05d7 (v1.7.1.9041) new GH actions, branches rename 2021-09-29 16:36:03 +02:00
5f433d6e5c (v1.7.1.9039) reinitiate all units tests 2021-09-03 13:08:36 +02:00
bcab74fb6d (v1.7.1.9037) dplyr grouping fix on windows? 2021-08-31 17:06:44 +02:00
953dfac9e5 (v1.7.1.9036) dplyr grouping fix on windows? 2021-08-30 16:49:46 +02:00
d6a916d70b (v1.7.1.9030) unit test 2021-08-29 23:50:45 +02:00
a2d249962f (v1.7.1.9023) Removed filter_ functions, new set_ab_names(), ATC code update, ab selector update, fixes #46 and fixed #47 2021-08-16 21:54:34 +02:00
350dbe6a11 (v1.7.1.9012) update unit tests 2021-07-04 20:25:30 +02:00
95050ee3e0 (v1.7.1.9007) Updated antibiotics dataset, fixes #41 2021-06-23 10:03:17 +02:00
1dc9d237f6 (v1.7.1.9006) unit tests 2021-06-22 13:09:41 +02:00
d04e83f494 (v1.7.1.9005) ab class selectors for R-3.0 and R-3.1 2021-06-22 12:16:42 +02:00
c44d9392ca (v1.7.1.9004) more extensive unit tests 2021-06-15 10:51:04 +02:00
683a0e748a (v1.7.1.9001) unit tests 2021-06-05 15:12:01 +02:00
1908e7cc7a (v1.7.1.9000) ab_class update, unit tests 2021-06-04 21:07:55 +02:00
bef0f42f66 (v1.7.0.9001) CLSI 2020 guideline 2021-06-01 15:33:06 +02:00
f406319503 (v1.7.0.9000) package size 2021-05-30 22:14:38 +02:00
f1d9b489c5 (v1.7.0) unit tests 2021-05-26 14:04:12 +02:00
ac73a8d849 v1.7.0 2021-05-24 15:29:17 +02:00
e5599bc694 (v1.6.0.9065) unit tests 2021-05-24 11:01:32 +02:00
a13fd98e8b (v1.6.0.9063) prepare new release 2021-05-24 09:00:11 +02:00
07939b1a14 (v1.6.0.9061) age() update 2021-05-23 23:11:16 +02:00
fa2f5214b9 (v1.6.0.9060) unit tests 2021-05-22 10:05:59 +02:00
adca43f8d9 covr update 2021-05-22 09:22:39 +02:00
0b1f59edec (v1.6.0.9058) unit tests 2021-05-22 08:58:51 +02:00
808024c5f4 covr 2021-05-21 23:13:01 +02:00
65a8b58aa6 (v1.6.0.9056) support codecov again 2021-05-21 20:30:48 +02:00
b210f1327c (v1.6.0.9055) support codecov again 2021-05-21 20:20:51 +02:00
4a2a48b7c1 (v1.6.0.9052) unit tests 2021-05-20 11:42:39 +02:00
d1b1828ab8 unit test 2021-05-20 10:55:07 +02:00
04ef5b28e7 (v1.6.0.9050) printing NA in custom_eucast_rules() 2021-05-20 10:10:40 +02:00
9a2879cba9 (v1.6.0.9049) unit tests 2021-05-20 00:07:27 +02:00
2413efd5c1 (v1.6.0.9048) ab selectors overhaul 2021-05-19 22:55:42 +02:00
6920c0be41 (v1.6.0.9047) filter_ab_class() fixes 2021-05-18 11:29:31 +02:00
7028dcfa5b that 1 AM error 2021-05-18 01:05:44 +02:00
cfb7df823e (v1.6.0.9044) betalactams() selector 2021-05-18 00:53:04 +02:00
be49131ed7 (v1.6.0.9043) translation update 2021-05-17 19:43:01 +02:00
83fec69a03 (v1.6.0.9042) translation update 2021-05-17 11:26:12 +02:00
916df6e90c (v1.6.0.9041) filter_ab_class() fix 2021-05-16 10:50:00 +02:00
00496e45b7 (v1.6.0.9040) unit tests 2021-05-16 09:25:36 +02:00
73fb0374c3 (v1.6.0.9036) unit tests 2021-05-15 23:25:10 +02:00
6e60ddf8d7 (v1.6.0.9034) unit tests 2021-05-15 22:35:57 +02:00
54dd868b22 (v1.6.0.9034) unit tests 2021-05-15 22:30:11 +02:00
0ce9fb4da2 (v1.6.0.9033) unit tests 2021-05-15 22:11:36 +02:00
86736ab9a7 (v1.6.0.9032) unit tests 2021-05-15 21:54:56 +02:00
d8c91d5876 (v1.6.0.9031) tinytest unit tests 2021-05-15 21:36:22 +02:00
9a381c8d18 (v1.6.0.9030) new unit test flow 2021-05-13 23:07:31 +02:00
c17acbe712 unit test fix 2021-05-13 22:44:59 +02:00
9ed2f6490f (v1.6.0.9028) new unit test flow 2021-05-13 22:44:11 +02:00
5b9fb8daf4 (v1.6.0.9027) new unit test flow 2021-05-13 21:54:15 +02:00
b1d942be91 (v1.6.0.9026) new unit test flow 2021-05-13 21:16:22 +02:00
994d157aa6 (v1.6.0.9025) unit test update 2021-05-13 20:53:56 +02:00
9d9d62eba4 (v1.6.0.9024) unit test update 2021-05-13 20:49:47 +02:00
aeea00881e (v1.6.0.9023) new unit test flow 2021-05-13 19:31:47 +02:00
5679ccdaf9 (v1.6.0.9017) extra system codes 2021-05-04 12:47:33 +02:00
9842ef9660 (v1.6.0.9004) unit test fix 2021-04-16 12:02:57 +02:00
00d3e437a8 (v1.6.0.9003) like() fix 2021-04-16 11:41:05 +02:00
d277d58475 (v1.6.0.9002) R-3.0 installation fix 2021-04-12 14:24:40 +02:00
6ff5448192 (v1.6.0.9001) support Inf for episodes 2021-04-12 12:35:13 +02:00
7a3139f7cc (v1.6.0.9000) custom EUCAST rules 2021-04-07 08:37:42 +02:00
062c49fca1 (v1.5.0.9022) mo properties speed improvement 2021-02-21 22:56:35 +01:00
5ef8cb41a7 (v1.5.0.9021) improve speed of %like% 2021-02-21 20:15:09 +01:00
2eca8c3f01 (v1.5.0.9014) only_rsi_columns, is.rsi.eligible improvement 2021-02-02 23:57:35 +01:00
20d638c193 (v1.5.0.9013) updated tibble printing colours 2021-01-28 16:09:30 +01:00
27f084d819 (v1.5.0.9007) updated unit tests 2021-01-18 18:45:43 +01:00