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mirror of https://github.com/msberends/AMR.git synced 2024-12-26 18:46:13 +01:00
Commit Graph

116 Commits

Author SHA1 Message Date
ac1c40d8bb (v2.1.1.9081) HUGE microorganisms update for fungi! 2024-09-29 22:17:56 +02:00
28bf91cbf5 (v2.1.1.9077) fix logos 2024-09-19 14:40:19 +02:00
640888f408 (v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update 2024-07-16 14:53:17 +02:00
a4dc37a4e4 (v2.1.1.9057) fix for missing breakpoints 2024-06-17 16:52:12 +02:00
31207952d3 (v2.1.1.9043) fix sir translation with as.double 2024-06-10 10:34:45 +02:00
94e9a4d99b update MIC implementation 2024-04-07 20:22:59 +02:00
46634bfcaa navbar colour 2024-02-25 16:48:04 +01:00
Matthijs Berends
8b43fed94d
Update _pkgdown.yml 2024-02-25 14:40:19 +01:00
8d077149fa new logo 2024-02-25 14:20:43 +01:00
c7461766ce Remove RSI from package, add extra MIC scale functions 2023-12-03 11:34:48 +01:00
4c11a7bd9c v2.1.1 2023-10-22 15:51:27 +02:00
3829311dd3 random() fix 2023-07-08 21:00:49 +02:00
acb534102b new species groups, updated clinical breakpoints 2023-07-08 17:30:05 +02:00
9591688811 documentation update 2023-05-27 10:39:22 +02:00
c6135d2082 updated microorganism codes 2023-05-26 16:10:01 +02:00
0bcf55d3b6 improve as.mo() 2023-05-24 15:55:53 +02:00
4416394e10 website update 2023-02-26 21:26:58 +01:00
e890360986 website syntax update 2023-02-17 11:39:00 +01:00
9e99e66f01 use dplyr where available, new antibiogram() for WISCA, fixed Salmonella Typhi/Paratyphi 2023-02-06 11:57:22 +01:00
eef00069fd add all options to documentation 2023-01-23 20:07:57 +01:00
Dr. Matthijs Berends
98e62c9af2
Replace RSI with SIR 2023-01-21 23:47:20 +01:00
e4ea96cbf9 fix for R < 3.4 2022-12-30 12:57:27 +01:00
fe09e9252b custom mo update 2022-12-27 16:03:03 +01:00
f619fb683b support new mo codes 2022-12-27 15:16:15 +01:00
eed1c14b96 website update 2022-12-11 11:44:29 +01:00
7ca44fb756 cleanup and new intro logo 2022-11-13 13:44:25 +01:00
Dr. Matthijs Berends
496c08d851
Implement extensive support for antiviral agents support (#77) 2022-11-13 08:46:10 +01:00
3deeedc4b6 website fix 2022-10-10 20:21:41 +02:00
bc44da0e38 website fix 2022-10-05 10:07:27 +02:00
def9fc0d75 fix website 2022-10-05 09:33:21 +02:00
Dr. Matthijs Berends
cd2acc4a29
New mo algorithm, prepare for 2.0 2022-10-05 09:12:22 +02:00
Dr. Matthijs Berends
a3b97a10a5
Update website 2022-08-30 22:17:14 +02:00
fbd5d32541 small fixes 2022-08-29 09:35:36 +02:00
53c4b37252 website update 2022-08-25 19:11:02 +02:00
bdbc112f99 website update 2022-08-21 17:22:34 +02:00
952d16de33 new, automated website 2022-08-21 16:37:20 +02:00
25cef46c59 (v1.8.0) prerelease 1.8.0 2021-12-23 18:56:28 +01:00
56f1ce328a (v1.7.1.9067) Support for Swedish and Russian 2021-12-12 09:42:03 +01:00
e63defe324 (v1.7.1.9062) website update 2021-12-06 11:12:30 +01:00
93a4734b44 (v1.7.1.9040) Support for Danish 2021-09-29 12:12:35 +02:00
1b62bab007 (v1.7.1.9025) unit tests 2021-08-18 23:19:38 +02:00
a2d249962f (v1.7.1.9023) Removed filter_ functions, new set_ab_names(), ATC code update, ab selector update, fixes #46 and fixed #47 2021-08-16 21:54:34 +02:00
4e1efd902c (v1.7.1.9022) rely on vctrs for ab selectors 2021-07-23 21:42:11 +02:00
2413efd5c1 (v1.6.0.9048) ab selectors overhaul 2021-05-19 22:55:42 +02:00
f33e61bac7 (v1.6.0.9016) website update and c() fixes 2021-05-03 13:06:43 +02:00
93683a4ae2 (v1.6.0.9010) big first_isolate() update 2021-04-26 23:57:37 +02:00
7a3139f7cc (v1.6.0.9000) custom EUCAST rules 2021-04-07 08:37:42 +02:00
8d6ceb6a15 (v1.5.0.9040) removal of isolate_identifier 2021-03-08 09:44:17 +01:00
ddf88345f1 (v1.5.0.9028) Updated taxonomy until March 2021 2021-03-04 23:28:32 +01:00
2eca8c3f01 (v1.5.0.9014) only_rsi_columns, is.rsi.eligible improvement 2021-02-02 23:57:35 +01:00