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72db2b2562
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(v3.0.0.9003) eucast_rules fix, new tidymodels integration
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2025-06-13 14:03:21 +02:00 |
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5667ce3eae
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(v2.1.1.9287) fix antibiotics
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2025-06-01 12:17:47 +02:00 |
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e70f3de02e
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(v2.1.1.9286) deprecate antibiotics better, add ATC for ceftaroline
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2025-06-01 11:54:40 +02:00 |
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38cebc1541
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(v2.1.1.9279) fix documentation, add foreign S3 exports to functions
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2025-05-16 16:55:29 +02:00 |
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e6f88241b2
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(v2.1.1.9225) fix geom_hline()/_vline() in MIC plotting, add EUCAT 1.2 in full, add London contribs, fix mo codes, add Kleb pneu complex
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2025-03-26 17:19:17 +01:00 |
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bb110646db
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(v2.1.1.9223) allow + ab
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2025-03-20 22:56:32 +01:00 |
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4dc4398ad1
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(v2.1.1.9217) allow + in amr selectors
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2025-03-18 16:35:22 +01:00 |
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f7938289eb
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(v2.1.1.9186) replace antibiotics with antimicrobials!
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2025-03-07 20:43:26 +01:00 |
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195dfb4b91
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(v2.1.1.9157) improved as.ab(), fixed knit_print of antibiogram
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2025-02-26 13:27:20 +01:00 |
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aa8f6af185
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(v2.1.1.9155) new mic_p50() and mic_p90() - updated AMR intro
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2025-02-23 11:18:08 +01:00 |
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d94efb0f5e
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(v2.1.1.9147) scale fixes and WISCA update, fix conserved capped values
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2025-02-14 14:16:46 +01:00 |
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bd2887bcd4
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(v2.1.1.9146) new scale_*_sir() functions
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2025-02-13 19:47:57 +01:00 |
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07757c933c
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(v2.1.1.9144) new MIC scales and fix for rescale_mic()
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2025-02-11 08:48:37 +01:00 |
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8ba2e4ed94
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(v2.1.1.9141) new AMR selectors, eucast overwrite arg
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2025-02-07 18:01:22 +01:00 |
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baea4323c7
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(v2.1.1.9140) WISCA fix
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2025-02-05 20:48:35 +01:00 |
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7accf6ff13
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(v2.1.1.9127) unit tests
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2025-01-27 10:46:43 +01:00 |
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66833b4f5a
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(v2.1.1.9126) implemented WISCA! Also added top_n_microorganisms() and fixed Python wrapper
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2025-01-26 23:01:17 +01:00 |
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92c4fc0f94
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(v2.1.1.9125) replace 'antibiotic selectors' with 'antimicrobial selectors'
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2025-01-17 12:09:39 +01:00 |
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08ddbaa930
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(v2.1.1.9123) add EFF code to antibiotics data set
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2025-01-15 16:14:09 +01:00 |
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0488d00f20
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(v2.1.1.9111) add betalactams_with_inhibitor(), fixes #175
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2024-12-06 15:44:20 +01:00 |
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640888f408
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(v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update
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2024-07-16 14:53:17 +02:00 |
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68f7795481
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(v2.1.1.9052) unit test fix
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2024-06-16 20:53:50 +02:00 |
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bdbf5198a2
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(v2.1.1.9050) vctrs fix for sir, small documentation fixes
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2024-06-15 15:33:49 +02:00 |
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31207952d3
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(v2.1.1.9043) fix sir translation with as.double
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2024-06-10 10:34:45 +02:00 |
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af74e1d4f2
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(v2.1.1.9041) antibiotics update
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2024-06-08 17:35:25 +02:00 |
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c3ce1b551d
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rename limit_mic_range() to rescale_mic()
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2024-05-24 15:07:41 +02:00 |
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2899b3c840
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new mo_group_members()
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2024-04-19 10:18:21 +02:00 |
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94e9a4d99b
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update MIC implementation
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2024-04-07 20:22:59 +02:00 |
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7be4dabbc0
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support veterinary MIC/disk translation
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2024-02-24 15:16:52 +01:00 |
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c7461766ce
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Remove RSI from package, add extra MIC scale functions
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2023-12-03 11:34:48 +01:00 |
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6f417d0ef2
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add scale_x_mic()
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2023-12-03 01:06:00 +01:00 |
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7cda9e575b
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prepare for CRAN
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2023-10-20 14:51:48 +02:00 |
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91fa73dedf
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add oxygen tolerance
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2023-05-11 21:56:27 +02:00 |
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e70f2cd32c
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knitr format
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2023-02-23 16:27:40 +01:00 |
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bc434db835
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bring back antibiogram(), without deps
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2023-02-10 16:18:00 +01:00 |
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1a0dc4bf46
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revert back to pre-antibiogram
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2023-02-09 13:07:39 +01:00 |
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9e99e66f01
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use dplyr where available, new antibiogram() for WISCA, fixed Salmonella Typhi/Paratyphi
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2023-02-06 11:57:22 +01:00 |
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Dr. Matthijs Berends
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98e62c9af2
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Replace RSI with SIR
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2023-01-21 23:47:20 +01:00 |
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86e28bafce
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add mo_pathogenicity
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2023-01-06 13:35:37 +01:00 |
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f619fb683b
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support new mo codes
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2022-12-27 15:16:15 +01:00 |
|
Dr. Matthijs Berends
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496c08d851
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Implement extensive support for antiviral agents support (#77)
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2022-11-13 08:46:10 +01:00 |
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faca6d608a
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mean AMR distance
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2022-10-21 16:02:14 +02:00 |
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178ab5e5ff
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mean AMR distance
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2022-10-21 15:59:31 +02:00 |
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aa2c0639d0
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add confidence intervals (fixed #70), remove combine_IR
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2022-10-20 16:08:01 +02:00 |
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82e3198315
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add add_custom_antimicrobials()
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2022-10-10 20:20:39 +02:00 |
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43c638d122
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add mo_current()
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2022-10-10 10:12:08 +02:00 |
|
Dr. Matthijs Berends
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cd2acc4a29
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New mo algorithm, prepare for 2.0
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2022-10-05 09:12:22 +02:00 |
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63fe160322
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new rsi_interpretation_history
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2022-09-01 15:20:57 +02:00 |
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3fca703fbf
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new AMR distance function
|
2022-08-30 21:48:02 +02:00 |
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3f2f60ab77
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language updates
|
2022-08-19 12:33:14 +02:00 |
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