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mirror of https://github.com/msberends/AMR.git synced 2025-04-19 23:53:51 +02:00

65 Commits

Author SHA1 Message Date
40d7a971c3
(v2.1.1.9236) documentation 2025-04-12 11:46:42 +02:00
36fd99e1f4
(v2.1.1.9235) New website! 2025-04-08 15:54:30 +01:00
a905303296
(v2.1.1.9234) fix CLSI 2025-04-07 17:36:01 +01:00
1fdab84103
(v2.1.1.9233) chore: make all argument texts full sentences 2025-03-31 14:53:24 +02:00
63099cd81e
(v2.1.1.9232) is.mic() iteration, documentation cleanup 2025-03-31 10:51:31 +02:00
a2c2be23c1
(v2.1.1.9190) antibiotics deprecation in antibiogram() 2025-03-09 10:41:11 +01:00
f7938289eb
(v2.1.1.9186) replace antibiotics with antimicrobials! 2025-03-07 20:43:26 +01:00
07efc292bc
(v2.1.1.9163) cleanup 2025-02-27 14:04:29 +01:00
baea4323c7
(v2.1.1.9140) WISCA fix 2025-02-05 20:48:35 +01:00
92c4fc0f94
(v2.1.1.9125) replace 'antibiotic selectors' with 'antimicrobial selectors' 2025-01-17 12:09:39 +01:00
5c4d8fcd2a (v2.1.1.9095) Python support 2024-10-15 17:12:55 +02:00
ef79d22daf (v2.1.1.9093) New brand names 2024-10-06 22:30:52 +02:00
ac1c40d8bb (v2.1.1.9081) HUGE microorganisms update for fungi! 2024-09-29 22:17:56 +02:00
640888f408 (v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update 2024-07-16 14:53:17 +02:00
9bf7584d58 (v2.1.1.9049) new 2024 breakpoints, add AMO, set NI instead of N 2024-06-14 22:39:01 +02:00
08a27922a8 new SDD and N for as.sir() 2024-05-20 15:27:04 +02:00
0039cb05d6 update MIC comparisons 2024-04-05 16:44:43 +02:00
7cda9e575b prepare for CRAN 2023-10-20 14:51:48 +02:00
acb534102b new species groups, updated clinical breakpoints 2023-07-08 17:30:05 +02:00
9591688811 documentation update 2023-05-27 10:39:22 +02:00
80cfc503c2 check for 2.0 2023-03-12 13:02:37 +01:00
9179e98e12 patient ID in first isolate 2023-03-11 17:13:19 +01:00
7ad8635994 documentation for 'data.table' AB selectors 2023-03-11 16:54:02 +01:00
dad25302f2 make rsi work in more cases, documentation update 2023-02-22 14:38:57 +01:00
45a9697c84 unit tests 2023-02-12 17:10:48 +01:00
bc434db835 bring back antibiogram(), without deps 2023-02-10 16:18:00 +01:00
1a0dc4bf46 revert back to pre-antibiogram 2023-02-09 13:07:39 +01:00
9e99e66f01 use dplyr where available, new antibiogram() for WISCA, fixed Salmonella Typhi/Paratyphi 2023-02-06 11:57:22 +01:00
19fd0ef121 sort sir history 2023-01-23 15:01:21 +01:00
Dr. Matthijs Berends
98e62c9af2
Replace RSI with SIR 2023-01-21 23:47:20 +01:00
f619fb683b support new mo codes 2022-12-27 15:16:15 +01:00
d40e0ef20b completely updated antibiotics 2022-10-30 14:31:45 +01:00
4bebba3610 fix for scoped dplyr verbs 2022-10-21 15:13:19 +02:00
aa2c0639d0 add confidence intervals (fixed #70), remove combine_IR 2022-10-20 16:08:01 +02:00
Dr. Matthijs Berends
cd2acc4a29
New mo algorithm, prepare for 2.0 2022-10-05 09:12:22 +02:00
4d050aef7c styled, unit test fix 2022-08-28 10:31:50 +02:00
303d61b473 new tibble export 2022-08-27 20:49:37 +02:00
952d16de33 new, automated website 2022-08-21 16:37:20 +02:00
25cef46c59 (v1.8.0) prerelease 1.8.0 2021-12-23 18:56:28 +01:00
56f1ce328a (v1.7.1.9067) Support for Swedish and Russian 2021-12-12 09:42:03 +01:00
99be4c7e7e (v1.7.1.9002) ab class selectors update 2021-06-14 22:04:04 +02:00
a13fd98e8b (v1.6.0.9063) prepare new release 2021-05-24 09:00:11 +02:00
29dbfa2f49 (v1.6.0.9021) join functions update 2021-05-12 18:15:03 +02:00
2eca8c3f01 (v1.5.0.9014) only_rsi_columns, is.rsi.eligible improvement 2021-02-02 23:57:35 +01:00
4eab095306 (v1.5.0.9006) major documentation update 2021-01-18 16:57:56 +01:00
8b52f9b1be (v1.4.0.9047) unit tests 2020-12-27 00:30:28 +01:00
128ebcfd62 (v1.4.0.9043) documentation update 2020-12-22 00:51:17 +01:00
81af41da3a (v1.4.0.9041) updates based on review 2020-12-17 16:22:25 +01:00
4e9ccb4435 (v1.4.0.9001) is_gram_positive(), is_gram_negative(), parameter hardening 2020-10-19 17:09:19 +02:00
28e77680c5 (v1.4.0) matching score update 2020-10-08 11:16:03 +02:00