Claude
befbccc304
Generalise interpretive rules for multi-guideline support ( #268 )
...
- Rename data-raw/eucast_rules.tsv → interpretive_rules.tsv; add rule.provider
column (value: "EUCAST") to distinguish future CLSI rows
- Rename EUCAST_RULES_DF → INTERPRETIVE_RULES_DF in _pre_commit_checks.R;
filter by rule.provider == guideline when applying rules in interpretive_rules()
- Rename custom_eucast_rules() → custom_interpretive_rules() with new S3 class
"custom_interpretive_rules"; old function becomes a deprecated wrapper in
zz_deprecated.R; backward-compat S3 dispatch shims added for old class
- Remove stop_if(guideline == "CLSI", ...) so clsi_rules() no longer errors
- Add .onLoad shim in zzz.R to create INTERPRETIVE_RULES_DF from EUCAST_RULES_DF
for transitional compatibility until sysdata.rda is regenerated
https://claude.ai/code/session_01D46BTsfJSPo3HnLWp3PRkP
2026-04-30 21:29:26 +00:00
225493192c
(v3.0.1.9043) fix unit test
2026-04-02 12:24:12 +02:00
975a690c10
(v3.0.1.9038) fix format inline
2026-03-22 22:16:59 +01:00
40d7a971c3
(v2.1.1.9236) documentation
2025-04-12 11:46:42 +02:00
36fd99e1f4
(v2.1.1.9235) New website!
2025-04-08 15:54:30 +01:00
bd873ac1bc
(v2.1.1.9229) unit tests
2025-03-28 11:40:09 +01:00
49da312506
(v2.1.1.9228) repo cleaning
2025-03-28 11:17:49 +01:00
969a42cc8c
(v2.1.1.9226) update intrinsic_resistant, unit test fixes
2025-03-27 15:20:22 +01:00
8deaf2c8eb
(v2.1.1.9224) skip tests on cran
2025-03-20 23:29:21 +01:00
58d7aa8790
(v2.1.1.9199) fix eucast
2025-03-14 13:43:22 +01:00
f7938289eb
(v2.1.1.9186) replace antibiotics with antimicrobials!
2025-03-07 20:43:26 +01:00
07efc292bc
(v2.1.1.9163) cleanup
2025-02-27 14:04:29 +01:00
f03933940c
(v2.1.1.9131) implement testthat
2025-01-27 21:43:10 +01:00
d8c91d5876
(v1.6.0.9031) tinytest unit tests
2021-05-15 21:36:22 +02:00
9ed2f6490f
(v1.6.0.9028) new unit test flow
2021-05-13 22:44:11 +02:00
655b813e99
(v1.6.0.9022) unit test fix
2021-05-13 15:56:12 +02:00
5679ccdaf9
(v1.6.0.9017) extra system codes
2021-05-04 12:47:33 +02:00
00d3e437a8
(v1.6.0.9003) like() fix
2021-04-16 11:41:05 +02:00
7a3139f7cc
(v1.6.0.9000) custom EUCAST rules
2021-04-07 08:37:42 +02:00
4e0a9533ad
(v1.5.0.9041) SNOMED update
2021-03-11 21:42:30 +01:00
8fda473e49
(v1.5.0.9015) unit test fix, grouped first isolates
2021-02-04 16:48:16 +01:00
2eca8c3f01
(v1.5.0.9014) only_rsi_columns, is.rsi.eligible improvement
2021-02-02 23:57:35 +01:00
27f084d819
(v1.5.0.9007) updated unit tests
2021-01-18 18:45:43 +01:00
bc00470dca
(v1.5.0.9001) more informative argument errors
2021-01-14 14:41:44 +01:00
175e33abba
(v1.4.0.9049) unit tests
2020-12-27 15:07:01 +01:00
ed198916bf
(v1.4.0.9048) AmpC de-repressed cephalo-resistant mutants
2020-12-27 14:23:11 +01:00
8b52f9b1be
(v1.4.0.9047) unit tests
2020-12-27 00:30:28 +01:00
2edd3339db
(v1.4.0.9036) more unit tests
2020-12-11 12:17:23 +01:00
01d9522434
(v1.4.0.9017) stringsAsFactors definitions
2020-11-11 16:49:27 +01:00
15c732703d
(v1.4.0.9015) bugfix
2020-11-10 16:35:56 +01:00
28e77680c5
(v1.4.0) matching score update
2020-10-08 11:16:03 +02:00
050a9a04fb
(v1.3.0.9030) matching score update
2020-09-26 16:26:01 +02:00
c19095a3d5
(v1.3.0.9026) eucast expert rules 3.2
2020-09-24 00:30:11 +02:00
a1411ddafc
(v1.3.0.9025) optimalisation
2020-09-19 15:15:57 +02:00
76fc8e1b14
(v1.2.0.9026) move to github
2020-07-08 14:48:06 +02:00
7f3da74b17
(v1.1.0.9004) lose dependencies
2020-05-16 13:05:47 +02:00
b040185269
(v1.1.0.9000) CLSI as.rsi() fix, better vctrs support, new CI
2020-04-29 14:33:44 +02:00
ea32e9916a
(v1.0.0.9005) info printing only in interactive mode
2020-02-21 21:13:38 +01:00
ced1a7b7fa
(v0.9.0.9008) Happy new year! Add lifecycles
2020-01-05 17:22:09 +01:00
10e6b225e7
(v0.7.1.9107) v0.8.0
2019-10-15 14:35:23 +02:00
93be16484b
(v0.7.1.9063) septic_patients -> example_isolates
2019-08-27 16:45:42 +02:00
90c874025a
(v0.7.1.9027) tibble printing
2019-08-07 15:37:39 +02:00
3a1f960f89
(v0.7.1.9024) eucast_rules() fix, new MOs
2019-08-06 14:39:22 +02:00
5608b27c7c
(v0.6.1.9051) support staged install
2019-06-01 20:54:56 +02:00
0dc0715dc6
CI tests
2019-05-13 12:21:57 +02:00
68cc7ef0d0
new antibiotics
2019-05-10 16:44:59 +02:00
fbc9191b13
new EUCAST rules algorithm
2019-04-05 18:47:39 +02:00
95c49fdf79
global var fix
2019-02-27 17:39:39 +01:00
80ea555663
guess_ab
2019-01-03 23:56:19 +01:00
6b2d464f8c
big website update, licence txt update
2019-01-02 23:24:07 +01:00