 dr. M.S. (Matthijs) Berends
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640888f408
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(v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update
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2024-07-16 14:53:17 +02:00 |
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dr. M.S. (Matthijs) Berends
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82585901a7
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(v2.1.1.9061) animal host fix
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2024-06-19 15:41:45 +02:00 |
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dr. M.S. (Matthijs) Berends
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c67d003e9e
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(v2.1.1.9060) SDD results now in `as.sir()`
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2024-06-19 15:08:23 +02:00 |
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dr. M.S. (Matthijs) Berends
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0c3d81f32e
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(v2.1.1.9059) documentation fix
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2024-06-17 22:26:05 +02:00 |
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dr. M.S. (Matthijs) Berends
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1bc2e04e1c
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(v2.1.1.9058) fix hosts, add translations
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2024-06-17 22:19:38 +02:00 |
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dr. M.S. (Matthijs) Berends
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a4dc37a4e4
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(v2.1.1.9057) fix for missing breakpoints
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2024-06-17 16:52:12 +02:00 |
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dr. M.S. (Matthijs) Berends
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d9e66fb118
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(v2.1.1.9056) example fix
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2024-06-17 14:52:18 +02:00 |
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dr. M.S. (Matthijs) Berends
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1e65b5a289
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(v2.1.1.9055) example fix
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2024-06-17 14:36:40 +02:00 |
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dr. M.S. (Matthijs) Berends
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13baf8d7be
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(v2.1.1.9054) fix examples
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2024-06-17 13:52:02 +02:00 |
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dr. M.S. (Matthijs) Berends
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2dee1d71dc
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(v2.1.1.9053) add `verbose` to `as.sir()`, unit test fix
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2024-06-17 10:38:45 +02:00 |
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dr. M.S. (Matthijs) Berends
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68f7795481
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(v2.1.1.9052) unit test fix
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2024-06-16 20:53:50 +02:00 |
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dr. M.S. (Matthijs) Berends
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bdbf5198a2
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(v2.1.1.9050) vctrs fix for `sir`, small documentation fixes
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2024-06-15 15:33:49 +02:00 |
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dr. M.S. (Matthijs) Berends
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9bf7584d58
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(v2.1.1.9049) new 2024 breakpoints, add `AMO`, set NI instead of N
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2024-06-14 22:39:01 +02:00 |
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dr. M.S. (Matthijs) Berends
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de17de1be9
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(v2.1.1.9048) vctrs update for sir
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2024-06-13 20:55:17 +02:00 |
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dr. M.S. (Matthijs) Berends
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c753afcd76
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(v2.1.1.9045) fix host in animal guidelines
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2024-06-12 10:32:43 +02:00 |
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dr. M.S. (Matthijs) Berends
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31207952d3
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(v2.1.1.9043) fix sir translation with as.double
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2024-06-10 10:34:45 +02:00 |
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dr. M.S. (Matthijs) Berends
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a3071cf58b
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(v2.1.1.9042) update translations and example isolates
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2024-06-09 11:31:04 +02:00 |
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dr. M.S. (Matthijs) Berends
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c5981cdeb3
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fix unit test
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2024-06-04 20:17:54 +02:00 |
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dr. M.S. (Matthijs) Berends
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7c1b564648
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fix SIR interpretation for uti
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2024-05-31 21:24:35 +02:00 |
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dr. M.S. (Matthijs) Berends
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60c6c21e45
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fix SIR interpretation
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2024-05-31 09:50:54 +02:00 |
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dr. M.S. (Matthijs) Berends
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ba4dc20cf3
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autoplot fix
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2024-05-30 16:39:59 +02:00 |
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dr. M.S. (Matthijs) Berends
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d4490c7f25
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fix sorting of MICs, MIC autoplot titles
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2024-05-30 15:50:17 +02:00 |
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dr. M.S. (Matthijs) Berends
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c3ce1b551d
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rename `limit_mic_range()` to `rescale_mic()`
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2024-05-24 15:07:41 +02:00 |
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dr. M.S. (Matthijs) Berends
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d214f74e25
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allow column name for `ab` in `as.sir()`
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2024-05-20 21:29:13 +02:00 |
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dr. M.S. (Matthijs) Berends
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fc269e667d
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unit test fix
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2024-05-20 18:58:35 +02:00 |
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dr. M.S. (Matthijs) Berends
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08a27922a8
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new SDD and N for `as.sir()`
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2024-05-20 15:27:04 +02:00 |
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dr. M.S. (Matthijs) Berends
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94e9a4d99b
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update MIC implementation
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2024-04-07 20:22:59 +02:00 |
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dr. M.S. (Matthijs) Berends
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0039cb05d6
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update MIC comparisons
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2024-04-05 16:44:43 +02:00 |
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dr. M.S. (Matthijs) Berends
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b303662ec6
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fix veterinary for R<4
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2024-02-24 19:26:35 +01:00 |
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dr. M.S. (Matthijs) Berends
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7be4dabbc0
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support veterinary MIC/disk translation
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2024-02-24 15:16:52 +01:00 |
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dr. M.S. (Matthijs) Berends
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c7461766ce
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Remove RSI from package, add extra MIC scale functions
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2023-12-03 11:34:48 +01:00 |
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dr. M.S. (Matthijs) Berends
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7cd9ca274c
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add strep groups to ABCG
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2023-07-12 11:41:25 +01:00 |
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dr. M.S. (Matthijs) Berends
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66eeeb4b88
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cleanup
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2023-07-11 14:29:40 +02:00 |
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dr. M.S. (Matthijs) Berends
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8df1cd8d97
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interpretation fixes
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2023-07-11 09:50:45 +02:00 |
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dr. M.S. (Matthijs) Berends
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1b499bf012
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fixes
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2023-07-10 17:02:28 +02:00 |
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dr. M.S. (Matthijs) Berends
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a4e2e25e3f
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reftbl in plots, speedup for as.sir() and mo_validate
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2023-07-10 16:43:46 +02:00 |
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dr. M.S. (Matthijs) Berends
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70c601ca11
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breakpoints UTI interpretation fix
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2023-07-10 13:41:52 +02:00 |
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dr. M.S. (Matthijs) Berends
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acb534102b
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new species groups, updated clinical breakpoints
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2023-07-08 17:30:05 +02:00 |
Dr. Matthijs Berends
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f065945d7b
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Update clinical breakpoints and fix some `as.mo()` bugs (#117)
* Updates clinical breakpoints EUCAST/CLSI 2023, fixes #102, fixes #112, fixes #113, fixes #114, fixes #115
* docs
* implement ecoffs
* unit tests
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2023-06-22 15:10:59 +02:00 |
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dr. M.S. (Matthijs) Berends
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9591688811
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documentation update
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2023-05-27 10:39:22 +02:00 |
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dr. M.S. (Matthijs) Berends
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0bcf55d3b6
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improve `as.mo()`
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2023-05-24 15:55:53 +02:00 |
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dr. M.S. (Matthijs) Berends
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80cfc503c2
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check for 2.0
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2023-03-12 13:02:37 +01:00 |
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dr. M.S. (Matthijs) Berends
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262598b8d7
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support for old rsi arguments
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2023-03-11 14:24:34 +01:00 |
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dr. M.S. (Matthijs) Berends
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c2cfc5ef84
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fix for `antibiogram()`, transform `WHONET` data set to `sir`
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2023-02-22 15:40:05 +01:00 |
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dr. M.S. (Matthijs) Berends
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dad25302f2
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make `rsi` work in more cases, documentation update
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2023-02-22 14:38:57 +01:00 |
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dr. M.S. (Matthijs) Berends
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8d902410f9
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unit tests
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2023-02-18 14:56:06 +01:00 |
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dr. M.S. (Matthijs) Berends
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45a9697c84
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unit tests
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2023-02-12 17:10:48 +01:00 |
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dr. M.S. (Matthijs) Berends
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68abb00c59
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add include_screening to `as.sir()`
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2023-02-12 15:09:54 +01:00 |
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dr. M.S. (Matthijs) Berends
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c740967cf2
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fix for binding rows
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2023-02-12 11:20:14 +01:00 |
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dr. M.S. (Matthijs) Berends
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c51fb24363
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pm_bind_rows
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2023-02-11 22:28:48 +01:00 |