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Author SHA1 Message Date
dr. M.S. (Matthijs) Berends 837dae925d travis update 2018-07-30 01:21:37 +02:00
dr. M.S. (Matthijs) Berends 211e3bae14 remove reshape2 dependency 2018-07-30 01:18:40 +02:00
dr. M.S. (Matthijs) Berends 510e8f22aa more unit tests 2018-07-30 00:57:49 +02:00
dr. M.S. (Matthijs) Berends d0a115d995 bactid speed improvement 2018-07-30 00:14:06 +02:00
dr. M.S. (Matthijs) Berends 826694323b new functions R, RI, SI, S 2018-07-29 22:14:51 +02:00
dr. M.S. (Matthijs) Berends 8421e3f005 more mic classes 2018-07-28 10:48:27 +02:00
dr. M.S. (Matthijs) Berends feab1cad6b small fixes 2018-07-28 09:34:03 +02:00
dr. M.S. (Matthijs) Berends 498e88b5cf improvement for forecasting resistance 2018-07-26 16:30:42 +02:00
dr. M.S. (Matthijs) Berends d9e204031d update to septic_patients, speed improvements 2018-07-25 14:17:04 +02:00
dr. M.S. (Matthijs) Berends 03a3cb397b clipboard update 2018-07-23 15:09:19 +02:00
dr. M.S. (Matthijs) Berends 8421638b60 new class bactid 2018-07-23 14:14:03 +02:00
dr. M.S. (Matthijs) Berends 40de1b4ac2 man 2018-07-23 10:37:49 +02:00
dr. M.S. (Matthijs) Berends 9920ac8a5c fix for keyab, more examples 2018-07-23 10:35:39 +02:00
dr. M.S. (Matthijs) Berends ad662d7bab new col names for key_antibiotics 2018-07-19 15:11:23 +02:00
dr. M.S. (Matthijs) Berends 0d64c166f0 keyab fixes 2018-07-17 19:51:09 +02:00
dr. M.S. (Matthijs) Berends 2a4d759fbc check fails 2018-07-17 14:48:11 +02:00
dr. M.S. (Matthijs) Berends 5cb9c541f8 new algorithm key abs 2018-07-17 13:02:05 +02:00
dr. M.S. (Matthijs) Berends 967ee86757 add unit tests 2018-07-17 11:18:36 +02:00
dr. M.S. (Matthijs) Berends a5a4354651 speed improvements 2018-07-17 10:32:26 +02:00
dr. M.S. (Matthijs) Berends 715a7630ca support format.freq 2018-07-16 16:41:48 +02:00
dr. M.S. (Matthijs) Berends 6eaf33baf3 speed improvements 2018-07-15 22:56:41 +02:00
dr. M.S. (Matthijs) Berends 8240959f38 support older mac release 2018-07-13 19:40:50 +02:00
dr. M.S. (Matthijs) Berends b6655f6454 Welcome C++! 2018-07-13 17:23:46 +02:00
dr. M.S. (Matthijs) Berends a28289562a remove print function, out of scope 2018-07-11 20:12:19 +02:00
dr. M.S. (Matthijs) Berends e3e10c2e88 fix for macOS and older tidyr versions 2018-07-11 12:34:02 +02:00
dr. M.S. (Matthijs) Berends eca406b18b travis build fails for macos 2018-07-11 11:46:06 +02:00
dr. M.S. (Matthijs) Berends 673ea81c0a libgit2 for macOS 2018-07-11 11:04:54 +02:00
dr. M.S. (Matthijs) Berends 330558e0f1 travis update 2018-07-11 10:39:47 +02:00
dr. M.S. (Matthijs) Berends 9e40771a17 get travis working again 2018-07-10 16:36:30 +02:00
dr. M.S. (Matthijs) Berends 490990c8cb no errors on 3.1 and 3.2 2018-07-10 16:31:13 +02:00
dr. M.S. (Matthijs) Berends 0da1071cd8 latest R version on both linux and macOS 2018-07-10 16:17:09 +02:00
dr. M.S. (Matthijs) Berends f2684b29e7 test R 3.1 to latest 2018-07-10 16:05:11 +02:00
dr. M.S. (Matthijs) Berends cde1892e25 allow failure of covr 2018-07-10 15:56:00 +02:00
dr. M.S. (Matthijs) Berends f63414d519 new g.test, extra unit tests 2018-07-10 12:27:07 +02:00
dr. M.S. (Matthijs) Berends fc30d3fb13 freq: support for table 2018-07-09 14:02:58 +02:00
dr. M.S. (Matthijs) Berends 18c91786bf Merge branch 'master' of https://github.com/msberends/AMR 2018-07-08 22:15:31 +02:00
dr. M.S. (Matthijs) Berends 14b990d769 kurtosis, skewness, start with ML 2018-07-08 22:14:55 +02:00
dr. M.S. (Matthijs) Berends c768ba0d9c A. lwoffi to A. lwoffii 2018-07-04 17:34:23 +02:00
dr. M.S. (Matthijs) Berends 34ee0247ac addins and small improvements to microorganisms dataset 2018-07-04 17:20:03 +02:00
dr. M.S. (Matthijs) Berends 10fce8382c include IQR and MAD in freq 2018-07-03 11:30:40 +02:00
dr. M.S. (Matthijs) Berends 3d0d21f322 rename vector2ratio to ratio 2018-07-02 11:14:20 +02:00
dr. M.S. (Matthijs) Berends a1acb2f3ac extra unit tests 2018-07-02 09:34:20 +02:00
dr. M.S. (Matthijs) Berends 2c8d4cb8bf forgot namespace... 2018-07-01 22:37:47 +02:00
dr. M.S. (Matthijs) Berends 2ca01e2d8d remove rlang dependency 2018-07-01 22:23:34 +02:00
dr. M.S. (Matthijs) Berends 965fe8681b rlang dep for Travis/macOS 2018-07-01 21:50:34 +02:00
dr. M.S. (Matthijs) Berends 3527894b49 new g.test() and edited freq() 2018-07-01 21:40:37 +02:00
dr. M.S. (Matthijs) Berends f7af8a81da update man page 2018-06-29 09:06:47 +02:00
dr. M.S. (Matthijs) Berends 6ee713cec1 move tbl_parse_guess 2018-06-29 08:56:03 +02:00
dr. M.S. (Matthijs) Berends 649a8025aa add clipboard functions again 2018-06-27 15:54:56 +02:00
dr. M.S. (Matthijs) Berends a9bd5472d0 top_freq 2018-06-20 14:47:37 +02:00
dr. M.S. (Matthijs) Berends 4a027f3c34 extra unit tests, add row.names to freq 2018-06-19 15:20:14 +02:00
dr. M.S. (Matthijs) Berends bdc860e29c atc_groups 2018-06-19 10:05:38 +02:00
dr. M.S. (Matthijs) Berends 0a5898b17d fix for printing tibbles, improve guess_bactid 2018-06-08 12:06:54 +02:00
dr. M.S. (Matthijs) Berends efdf5a3dc5 prevent dplyr:row_number warning 2018-05-31 14:19:25 +02:00
dr. M.S. (Matthijs) Berends 5593aee19e edit as.rsi algor. 2018-05-30 23:02:16 +02:00
dr. M.S. (Matthijs) Berends af524626b6 Merge branch 'master' of https://github.com/msberends/AMR 2018-05-14 11:54:25 +02:00
dr. M.S. (Matthijs) Berends 95f7c78fd6 edit vignette title 2018-05-14 11:54:08 +02:00
dr. M.S. (Matthijs) Berends f05e7178cb added vignette of freq 2018-05-09 11:44:46 +02:00
dr. M.S. (Matthijs) Berends 25b3346d9a edit methodology of rsi 2018-05-03 10:19:02 +02:00
dr. M.S. (Matthijs) Berends c0fc82c794 Added function n_rsi 2018-05-02 14:56:25 +02:00
dr. M.S. (Matthijs) Berends e5ae7b98ac update logo 2018-05-01 09:59:37 +02:00
dr. M.S. (Matthijs) Berends 6eaf594cb7 update data info 2018-05-01 09:57:50 +02:00
dr. M.S. (Matthijs) Berends be5d714639 update README 2018-05-01 09:43:47 +02:00
dr. M.S. (Matthijs) Berends 19ccc51f40 remove clipboard functions 2018-05-01 09:36:45 +02:00
dr. M.S. (Matthijs) Berends 6fa93fc286 fix clipboard check 2018-04-30 16:54:37 +02:00
dr. M.S. (Matthijs) Berends 8fe70d5652 Fix Latex PDF error 2018-04-30 16:24:11 +02:00
dr. M.S. (Matthijs) Berends 970e3ed7f1 EUCAST rules for MDRO 2018-04-25 15:33:58 +02:00
dr. M.S. (Matthijs) Berends 0b22ddef8e more unit tests 2018-04-20 13:45:34 +02:00
dr. M.S. (Matthijs) Berends 82fec5cc51 Try to support older R versions 2018-04-19 14:10:57 +02:00
dr. M.S. (Matthijs) Berends e7396b8f39 Try to support older R versions 2018-04-19 12:50:23 +02:00
dr. M.S. (Matthijs) Berends d79132b29f Try to support older R versions 2018-04-18 15:41:27 +02:00
dr. M.S. (Matthijs) Berends 4b5530ed64 Try to support older R versions 2018-04-18 15:19:00 +02:00
dr. M.S. (Matthijs) Berends a814d82b4b try to support older R versions 2018-04-18 14:50:16 +02:00
dr. M.S. (Matthijs) Berends 2509e2413d MDRO, freq tables, new print format for tibbles 2018-04-18 12:24:54 +02:00
dr. M.S. (Matthijs) Berends 3165c50d06 more MOs 2018-04-03 16:07:32 +02:00
dr. M.S. (Matthijs) Berends 4a47e59e6f fortify code with more tests 2018-04-03 11:08:31 +02:00
dr. M.S. (Matthijs) Berends 1b3cc41c08 fix tests 2018-03-27 17:58:46 +02:00
dr. M.S. (Matthijs) Berends 6f7730dcaa add tests using testthat 2018-03-27 17:43:42 +02:00
dr. M.S. (Matthijs) Berends 53464ff1c8 - For functions first_isolate, EUCAST_rules the antibiotic column names are case-insensitive 
- Functions `first_isolate`, `EUCAST_rules` and `rsi_predict` supports tidyverse-like evaluation of parameters (no need to quote columns them anymore)
- Functions `clipboard_import` and `clipboard_export` as helper functions to quickly copy and paste from/to software like Excel and SPSS
- Renamed dataset `bactlist` to `microorganisms`
 2018-03-23 14:46:02 +01:00
dr. M.S. (Matthijs) Berends e1e19af625 README update 2018-03-22 13:45:04 +01:00
dr. M.S. (Matthijs) Berends fe803f7279 use guess_bactid for GLIMS codes 2018-03-19 21:23:21 +01:00
dr. M.S. (Matthijs) Berends c765f424ab typo 2018-03-19 21:03:23 +01:00
dr. M.S. (Matthijs) Berends dd2517ecb7 - Added new algorithm to determine weighted isolates, can now be points or keyantibiotics, see ?first_isolate` 
- Function `first_isolate` supports tidyverse-like evaluation of parameters (no need to quote them anymore)
- Functions `as.rsi` and `as.mic` now add the package name and version as attribute
 2018-03-19 20:39:23 +01:00
dr. M.S. (Matthijs) Berends 502a44eb25 - Added new function guess_bactid to determine the ID of a microorganism based on genus/species 
- Renamed `ablist` to `antibiotics`
- Added support for character vector in join functions
- Altered `%like%` to make it case insensitive
 2018-03-19 12:43:22 +01:00
dr. M.S. (Matthijs) Berends 6c67c8f6c1 examples edit 2018-03-14 09:58:58 +01:00
dr. M.S. (Matthijs) Berends 46db3f7b13 import from graphics 2018-03-13 15:40:10 +01:00
dr. M.S. (Matthijs) Berends 53959d40c7 typo in examples 2018-03-13 14:40:52 +01:00
dr. M.S. (Matthijs) Berends 04fc3573ec add barplots 2018-03-13 14:34:10 +01:00
dr. M.S. (Matthijs) Berends e4b371d30a add MIC values 
add badges to readme
 2018-03-13 11:57:30 +01:00
dr. M.S. (Matthijs) Berends 34e70a65ed added septic_patients 2018-02-27 20:01:02 +01:00
dr. M.S. (Matthijs) Berends 98b2b99913 new atc codes 2018-02-26 16:06:49 +01:00
dr. M.S. (Matthijs) Berends 8a603876d2 misc 2018-02-26 15:53:09 +01:00
dr. M.S. (Matthijs) Berends 915d4db23b add rows to summary 2018-02-26 14:37:40 +01:00
dr. M.S. (Matthijs) Berends 6fa05fe33b first isolates 2018-02-26 14:06:31 +01:00
dr. M.S. (Matthijs) Berends d36a391747 export first_isolate 2018-02-26 12:15:52 +01:00
dr. M.S. (Matthijs) Berends be51a95448 rename columns 2018-02-26 10:53:54 +01:00
dr. M.S. (Matthijs) Berends 3f859210d5 new date for push test 2018-02-22 22:04:22 +01:00
dr. M.S. (Matthijs) Berends 11683b082e EUCAST man pages 2018-02-22 21:42:01 +01:00