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mirror of https://github.com/msberends/AMR.git synced 2024-12-27 08:46:12 +01:00
Commit Graph

110 Commits

Author SHA1 Message Date
1db74e86cd good start-up practice 2022-12-29 16:23:57 +01:00
f619fb683b support new mo codes 2022-12-27 15:16:15 +01:00
23fe427cbc Fixes for Salmonella 2022-12-17 14:31:33 +01:00
8da2467209 updated taxonomy 2022-12-12 00:14:56 +01:00
e7d7b94b3e no obligatory note on startup 2022-12-09 15:10:49 +01:00
31fb81c382 revised as.rsi(), fix for mdro() 2022-11-24 20:29:00 +01:00
Dr. Matthijs Berends
496c08d851
Implement extensive support for antiviral agents support (#77) 2022-11-13 08:46:10 +01:00
796b972f8a extend vctrs support 2022-10-31 11:19:06 +01:00
9444ed6d1d fix antibiotics error 2022-10-30 21:05:46 +01:00
d40e0ef20b completely updated antibiotics 2022-10-30 14:31:45 +01:00
c2801ba7a1 new rsi_translation 2022-10-22 22:00:15 +02:00
76bcd3528c move object assignment to AMR_env 2022-10-14 13:02:50 +02:00
33227a5d90 support ab selectors for manual AB codes 2022-10-11 10:49:55 +02:00
4fe90092c7 fix for NA in as.ab() 2022-10-10 15:44:59 +02:00
Dr. Matthijs Berends
cd2acc4a29
New mo algorithm, prepare for 2.0 2022-10-05 09:12:22 +02:00
63fe160322 new rsi_interpretation_history 2022-09-01 15:20:57 +02:00
3fca703fbf new AMR distance function 2022-08-30 21:48:02 +02:00
4d050aef7c styled, unit test fix 2022-08-28 10:31:50 +02:00
303d61b473 new tibble export 2022-08-27 20:49:37 +02:00
3864ab2fb8 Feather and Parquet files 2022-08-26 22:25:15 +02:00
952d16de33 new, automated website 2022-08-21 16:37:20 +02:00
7f981e7778 (v1.8.1.9013) add Toxoplasma 2022-06-10 13:15:23 +02:00
1b0983e382 (v1.8.1) prerelease 1.8.1 2022-03-14 16:36:10 +01:00
18e8525d10 (v1.8.0.9001) as.mo improvement, fixes #52 2022-02-26 21:58:23 +01:00
25cef46c59 (v1.8.0) prerelease 1.8.0 2021-12-23 18:56:28 +01:00
75dac113b6 (v1.7.1.9077) skimr support only for newer R versions 2021-12-23 13:38:25 +01:00
bd4bb1d72f (v1.7.1.9073) as.rsi() fix for UTIs 2021-12-14 21:47:14 +01:00
9a2c431e16 (v1.7.1.9053) fortify() methods 2021-11-01 13:51:13 +01:00
a2d249962f (v1.7.1.9023) Removed filter_ functions, new set_ab_names(), ATC code update, ab selector update, fixes #46 and fixed #47 2021-08-16 21:54:34 +02:00
4e1efd902c (v1.7.1.9022) rely on vctrs for ab selectors 2021-07-23 21:42:11 +02:00
6838f03bde (v1.7.1.9020) autoplot generics 2021-07-12 20:24:49 +02:00
b228eb1536 (v1.7.1.9016) only_treatable ab selectors 2021-07-08 22:23:28 +02:00
625a6fb304 (v1.7.1.9015) removed S3 taxonomic_name again 2021-07-07 20:34:05 +02:00
3bd50710e8 (v1.7.1.9010) fix for count_* and proportion_* 2021-07-04 12:00:41 +02:00
99be4c7e7e (v1.7.1.9002) ab class selectors update 2021-06-14 22:04:04 +02:00
f406319503 (v1.7.0.9000) package size 2021-05-30 22:14:38 +02:00
aeea00881e (v1.6.0.9023) new unit test flow 2021-05-13 19:31:47 +02:00
29dbfa2f49 (v1.6.0.9021) join functions update 2021-05-12 18:15:03 +02:00
c6289c3fc3 (v1.6.0.9007) documentation custom eucast rules, progress bar as.mo 2021-04-20 10:46:17 +02:00
41f94cde97 (v1.5.0.9027) website update 2021-02-26 12:11:29 +01:00
a673407904 (v1.5.0.9025) big plot and ggplot generics update 2021-02-25 10:33:08 +01:00
2eca8c3f01 (v1.5.0.9014) only_rsi_columns, is.rsi.eligible improvement 2021-02-02 23:57:35 +01:00
1ba44776a1 (v1.5.0.9008) Internal data sets to pkg, speed for auto col determination 2021-01-22 10:20:41 +01:00
d014955ce0 (v.1.5.0.9000) implementation of EUCAST rules v11 (2021) 2021-01-12 22:08:04 +01:00
d3f007bf65 (v1.4.0.9053) unit test old R versions 2020-12-29 21:23:01 +01:00
8b52f9b1be (v1.4.0.9047) unit tests 2020-12-27 00:30:28 +01:00
df37584189 (v1.4.0.9044) mo tibble printing, mo_shortname() fix 2020-12-24 23:29:10 +01:00
81af41da3a (v1.4.0.9041) updates based on review 2020-12-17 16:22:25 +01:00
1bdb136b3a (v1.4.0.9032) auto-data guessing for functions 2020-12-07 16:06:42 +01:00
15c732703d (v1.4.0.9015) bugfix 2020-11-10 16:35:56 +01:00