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9e99e66f01
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use dplyr where available, new antibiogram() for WISCA, fixed Salmonella Typhi/Paratyphi
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2023-02-06 11:57:22 +01:00 |
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4b133d4c96
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unit tests
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2023-01-30 17:24:03 +01:00 |
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830c67f1bf
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documentation, unit tests
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2023-01-24 10:20:27 +01:00 |
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eef00069fd
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add all options to documentation
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2023-01-23 20:07:57 +01:00 |
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19fd0ef121
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sort sir history
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2023-01-23 15:01:21 +01:00 |
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Dr. Matthijs Berends
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98e62c9af2
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Replace RSI with SIR
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2023-01-21 23:47:20 +01:00 |
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593d740b84
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documentation, file permissions
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2023-01-19 12:54:53 +01:00 |
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b94bc6c67b
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adding mo fixes
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2023-01-14 19:50:25 +01:00 |
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ca79068604
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Fix for adding MO's
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2023-01-14 17:10:10 +01:00 |
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33f269e2f4
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contrib update
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2023-01-12 23:16:05 +01:00 |
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1029aa2fdc
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algorithm improvement
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2023-01-07 14:53:14 +01:00 |
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08fe5a88c0
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documentation
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2023-01-07 01:54:46 +01:00 |
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2375bfdcb5
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documentation
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2023-01-07 01:51:19 +01:00 |
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84ed8c32bb
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documentation
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2023-01-06 19:21:04 +01:00 |
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86e28bafce
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add mo_pathogenicity
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2023-01-06 13:35:37 +01:00 |
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268ec31d92
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unit tests
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2023-01-05 18:21:48 +01:00 |
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a98d0d75ea
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styler dep
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2023-01-05 14:46:44 +01:00 |
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77d9cf1936
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documentation
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2022-12-30 13:02:37 +01:00 |
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61c0bdb7af
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documentation
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2022-12-28 15:04:59 +01:00 |
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ba3b237bdf
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custom mo update
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2022-12-28 14:20:10 +01:00 |
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f619fb683b
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support new mo codes
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2022-12-27 15:16:15 +01:00 |
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f0a2cdbf5e
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update mo algorithm
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2022-12-20 16:14:04 +01:00 |
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b1b7534c78
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incorporate Bartlett et al (2022)
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2022-12-19 15:32:41 +01:00 |
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23fe427cbc
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Fixes for Salmonella
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2022-12-17 14:31:33 +01:00 |
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5f3a7694aa
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microorganisms update, added Salmonella groups
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2022-12-16 16:10:43 +01:00 |
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8da2467209
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updated taxonomy
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2022-12-12 00:14:56 +01:00 |
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eed1c14b96
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website update
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2022-12-11 11:44:29 +01:00 |
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b1ead9c0fe
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doc update
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2022-12-10 10:09:57 +01:00 |
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56dad34e68
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update prevalence with new phyla
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2022-12-09 13:37:08 +01:00 |
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510140fc55
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Updated mo_gramstain() to reflect current taxonomy, fixes #83
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2022-12-09 10:30:25 +01:00 |
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31fb81c382
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revised as.rsi(), fix for mdro()
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2022-11-24 20:29:00 +01:00 |
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f6862a139d
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expert rules 12.0
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2022-11-14 15:20:39 +01:00 |
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7ca44fb756
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cleanup and new intro logo
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2022-11-13 13:44:25 +01:00 |
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Dr. Matthijs Berends
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496c08d851
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Implement extensive support for antiviral agents support (#77)
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2022-11-13 08:46:10 +01:00 |
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2d90218305
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documentation fix
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2022-11-05 12:06:40 +01:00 |
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8dc94a9eda
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documentation fix
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2022-11-05 09:31:19 +01:00 |
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3b652983b7
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documentation fix
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2022-11-05 08:18:06 +01:00 |
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9444ed6d1d
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fix antibiotics error
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2022-10-30 21:05:46 +01:00 |
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d40e0ef20b
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completely updated antibiotics
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2022-10-30 14:31:45 +01:00 |
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3d9faf89cf
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ATC and DDD update
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2022-10-29 19:01:23 +02:00 |
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6ad7857d39
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fix missing R breakpoints
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2022-10-29 14:15:23 +02:00 |
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c2801ba7a1
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new rsi_translation
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2022-10-22 22:00:15 +02:00 |
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d0b54f640c
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Update contributors list
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2022-10-21 21:56:54 +02:00 |
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faca6d608a
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mean AMR distance
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2022-10-21 16:02:14 +02:00 |
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178ab5e5ff
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mean AMR distance
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2022-10-21 15:59:31 +02:00 |
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4bebba3610
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fix for scoped dplyr verbs
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2022-10-21 15:13:19 +02:00 |
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aa2c0639d0
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add confidence intervals (fixed #70), remove combine_IR
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2022-10-20 16:08:01 +02:00 |
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85e2fbe4a3
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remove warnings from unit tests
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2022-10-19 11:47:57 +02:00 |
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ad68b50ecd
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custom ab fix
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2022-10-15 15:20:13 +02:00 |
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76bcd3528c
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move object assignment to AMR_env
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2022-10-14 13:02:50 +02:00 |
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