Commit Graph

152 Commits

Author SHA1 Message Date
dr. M.S. (Matthijs) Berends 9444ed6d1d fix antibiotics error 2022-10-30 21:05:46 +01:00
dr. M.S. (Matthijs) Berends d40e0ef20b completely updated `antibiotics` 2022-10-30 14:31:45 +01:00
dr. M.S. (Matthijs) Berends 3d9faf89cf ATC and DDD update 2022-10-29 19:01:23 +02:00
dr. M.S. (Matthijs) Berends 6ad7857d39 fix missing R breakpoints 2022-10-29 14:15:23 +02:00
dr. M.S. (Matthijs) Berends c2801ba7a1 new rsi_translation 2022-10-22 22:00:15 +02:00
dr. M.S. (Matthijs) Berends b753b84128 fix for mo type translation 2022-10-06 12:11:51 +02:00
Dr. Matthijs Berends cd2acc4a29
New mo algorithm, prepare for 2.0 2022-10-05 09:12:22 +02:00
dr. M.S. (Matthijs) Berends e7af5fc716 fix AMR vignette 2022-08-28 22:38:08 +02:00
dr. M.S. (Matthijs) Berends 303d61b473 new tibble export 2022-08-27 20:49:37 +02:00
dr. M.S. (Matthijs) Berends 3864ab2fb8 Feather and Parquet files 2022-08-26 22:25:15 +02:00
dr. M.S. (Matthijs) Berends 7226b70c3d update languages 2022-08-20 20:17:14 +02:00
dr. M.S. (Matthijs) Berends 3f2f60ab77 language updates 2022-08-19 12:33:14 +02:00
dr. M.S. (Matthijs) Berends ab97268f4c (v1.8.1.9014) add Toxoplasma 2022-08-12 23:27:15 +02:00
dr. M.S. (Matthijs) Berends 7f981e7778 (v1.8.1.9013) add Toxoplasma 2022-06-10 13:15:23 +02:00
dr. M.S. (Matthijs) Berends 2c5bc73ed6 (v1.8.1.9009) random when pkg not loaded 2022-05-16 09:29:46 +02:00
dr. M.S. (Matthijs) Berends 6de5375256 (v1.8.1.9007) website update 2022-05-11 10:10:31 +02:00
dr. M.S. (Matthijs) Berends 152db9d1b5 (v1.8.1.9002) fix for table() on MICs 2022-05-09 17:08:40 +02:00
dr. M.S. (Matthijs) Berends 1b0983e382 (v1.8.1) prerelease 1.8.1 2022-03-14 16:36:10 +01:00
dr. M.S. (Matthijs) Berends 578e7dfee9 (v1.7.1.9070) Better WHONET support 2021-12-13 10:18:28 +01:00
dr. M.S. (Matthijs) Berends 1e66a3daf3 (v1.7.1.9068) new logo, unit tests 2021-12-12 11:07:02 +01:00
dr. M.S. (Matthijs) Berends 56f1ce328a (v1.7.1.9067) Support for Swedish and Russian 2021-12-12 09:42:03 +01:00
dr. M.S. (Matthijs) Berends 77ba4318ea (v1.7.1.9064) eucast 3.3 for mdro(), major change to repeated calling 2021-12-11 13:41:31 +01:00
dr. M.S. (Matthijs) Berends c8698347cb (v1.7.1.9055) added EUCAST 3.3 and all LPSN records numbers 2021-11-29 10:38:38 +01:00
dr. M.S. (Matthijs) Berends 694cf5ba77 (v1.7.1.9054) mdro() update - fixes #49, first_isolate() speedup 2021-11-28 23:01:26 +01:00
dr. M.S. (Matthijs) Berends 91149d6d35 (v1.7.1.9052) eucast-update 2021-10-06 16:22:36 +02:00
dr. M.S. (Matthijs) Berends 37e6e35ec4 (v1.7.1.9051) updated taxonomy, updated git branch name 2021-10-06 13:23:57 +02:00
dr. M.S. (Matthijs) Berends 93a4734b44 (v1.7.1.9040) Support for Danish 2021-09-29 12:12:35 +02:00
dr. M.S. (Matthijs) Berends a2d249962f (v1.7.1.9023) Removed filter_ functions, new set_ab_names(), ATC code update, ab selector update, fixes #46 and fixed #47 2021-08-16 21:54:34 +02:00
dr. M.S. (Matthijs) Berends 4e1efd902c (v1.7.1.9022) rely on vctrs for ab selectors 2021-07-23 21:42:11 +02:00
dr. M.S. (Matthijs) Berends 5ccb330b42 (v1.7.1.9018) translation fix 2021-07-11 13:20:45 +02:00
dr. M.S. (Matthijs) Berends b228eb1536 (v1.7.1.9016) only_treatable ab selectors 2021-07-08 22:23:28 +02:00
dr. M.S. (Matthijs) Berends ad10693a1a (v1.7.1.9014) rep() for S3 classes 2021-07-06 16:35:14 +02:00
dr. M.S. (Matthijs) Berends 3e26929838 (v1.7.1.9009) fix for ab class selectors 2021-07-03 21:56:53 +02:00
dr. M.S. (Matthijs) Berends 95050ee3e0 (v1.7.1.9007) Updated antibiotics dataset, fixes #41 2021-06-23 10:03:17 +02:00
dr. M.S. (Matthijs) Berends 99be4c7e7e (v1.7.1.9002) ab class selectors update 2021-06-14 22:04:04 +02:00
dr. M.S. (Matthijs) Berends 1908e7cc7a (v1.7.1.9000) ab_class update, unit tests 2021-06-04 21:07:55 +02:00
dr. M.S. (Matthijs) Berends 7e70403efb (v1.7.1) New CRAN release 2021-06-03 15:19:21 +02:00
dr. M.S. (Matthijs) Berends f406319503 (v1.7.0.9000) package size 2021-05-30 22:14:38 +02:00
dr. M.S. (Matthijs) Berends b210f1327c (v1.6.0.9055) support codecov again 2021-05-21 20:20:51 +02:00
dr. M.S. (Matthijs) Berends 83fec69a03 (v1.6.0.9042) translation update 2021-05-17 11:26:12 +02:00
dr. M.S. (Matthijs) Berends 3319fbae58 (v1.6.0.9020) fix for skimr in dplyr 1.0.6 2021-05-06 15:17:11 +02:00
dr. M.S. (Matthijs) Berends 5679ccdaf9 (v1.6.0.9017) extra system codes 2021-05-04 12:47:33 +02:00
dr. M.S. (Matthijs) Berends a9fd4aa49f (v1.6.0.9013) website update 2021-04-29 17:16:30 +02:00
dr. M.S. (Matthijs) Berends c5fff1c95c (v1.6.0.9011) unit tests 2021-04-27 10:27:13 +02:00
dr. M.S. (Matthijs) Berends de66eccf43 (v1.6.0.9006) eucast rules fix for Ochrobactrum anthropi 2021-04-16 14:59:57 +02:00
dr. M.S. (Matthijs) Berends 9842ef9660 (v1.6.0.9004) unit test fix 2021-04-16 12:02:57 +02:00
dr. M.S. (Matthijs) Berends 00d3e437a8 (v1.6.0.9003) like() fix 2021-04-16 11:41:05 +02:00
dr. M.S. (Matthijs) Berends 7a3139f7cc (v1.6.0.9000) custom EUCAST rules 2021-04-07 08:37:42 +02:00
dr. M.S. (Matthijs) Berends 4e0a9533ad (v1.5.0.9041) SNOMED update 2021-03-11 21:42:30 +01:00
dr. M.S. (Matthijs) Berends 850c123de7 (v1.5.0.9032) All group generics for MICs 2021-03-07 13:52:39 +01:00
dr. M.S. (Matthijs) Berends 0d29bde693 (v1.5.0.9030) as.ab() speed improvement 2021-03-05 10:32:09 +01:00
dr. M.S. (Matthijs) Berends 0e0e3c4ffa (v1.5.0.9029) added missing families and orders 2021-03-05 01:31:46 +01:00
dr. M.S. (Matthijs) Berends ddf88345f1 (v1.5.0.9028) Updated taxonomy until March 2021 2021-03-04 23:28:32 +01:00
dr. M.S. (Matthijs) Berends 062c49fca1 (v1.5.0.9022) mo properties speed improvement 2021-02-21 22:56:35 +01:00
dr. M.S. (Matthijs) Berends daa12ced2c (v1.5.0.9020) translation fix 2021-02-18 23:23:14 +01:00
dr. M.S. (Matthijs) Berends 2eca8c3f01 (v1.5.0.9014) only_rsi_columns, is.rsi.eligible improvement 2021-02-02 23:57:35 +01:00
dr. M.S. (Matthijs) Berends 331c1f6508 (v1.5.0.9012) ampc_cephalosporin_resistance for I 2021-01-25 21:58:00 +01:00
dr. M.S. (Matthijs) Berends 1ba44776a1 (v1.5.0.9008) Internal data sets to pkg, speed for auto col determination 2021-01-22 10:20:41 +01:00
dr. M.S. (Matthijs) Berends d014955ce0 (v.1.5.0.9000) implementation of EUCAST rules v11 (2021) 2021-01-12 22:08:04 +01:00
dr. M.S. (Matthijs) Berends 526f8afb08 (v1.4.0.9052) replaced all sapply's with type-safe vapply's 2020-12-28 22:24:33 +01:00
dr. M.S. (Matthijs) Berends ed198916bf (v1.4.0.9048) AmpC de-repressed cephalo-resistant mutants 2020-12-27 14:23:11 +01:00
dr. M.S. (Matthijs) Berends dd5a0319ef (v1.4.0.9014) bugfix 2020-11-09 15:18:36 +01:00
dr. M.S. (Matthijs) Berends 4e0374af29 (v1.3.0.9035) mdro() for EUCAST 3.2, examples cleanup 2020-09-29 23:35:46 +02:00
dr. M.S. (Matthijs) Berends 9667c2994f (v1.3.0.9029) eucast rules fix, unique() 2020-09-25 14:44:50 +02:00
dr. M.S. (Matthijs) Berends c19095a3d5 (v1.3.0.9026) eucast expert rules 3.2 2020-09-24 00:30:11 +02:00
dr. M.S. (Matthijs) Berends 2f0186ace2 (v1.3.0.9024) optimalisation 2020-09-19 12:57:51 +02:00
dr. M.S. (Matthijs) Berends 7b6dd676f7 (v1.3.0.9018) language corrections 2020-09-14 12:21:23 +02:00
dr. M.S. (Matthijs) Berends c4b87fe241 (v1.3.0.9014) as.mo() speed improvement 2020-09-03 12:31:48 +02:00
dr. M.S. (Matthijs) Berends 1b65d76cfb (v1.2.0.9037) survey on website 2020-07-28 18:39:57 +02:00
dr. M.S. (Matthijs) Berends 09fba38ea6 (v1.2.0.9035) as.mo() speed improvement 2020-07-22 10:24:23 +02:00
dr. M.S. (Matthijs) Berends 329a0eb0b6 (v1.2.0.9019) ab_from_text() dose and administration 2020-07-01 11:07:01 +02:00
dr. M.S. (Matthijs) Berends 5dc4c96b7d (v1.2.0.9001) filter_ab_class() update 2020-06-03 11:48:00 +02:00
dr. M.S. (Matthijs) Berends 86d44054f0 (v1.1.0.9020) updated taxonomy 2020-05-27 16:37:49 +02:00
dr. M.S. (Matthijs) Berends 1b1e243d14 (v1.1.0.9016) small fix 2020-05-21 12:28:57 +02:00
dr. M.S. (Matthijs) Berends 19703eb5d3 (v1.1.0.9012) lose dependencies 2020-05-19 12:08:49 +02:00
dr. M.S. (Matthijs) Berends 7f3da74b17 (v1.1.0.9004) lose dependencies 2020-05-16 13:05:47 +02:00
dr. M.S. (Matthijs) Berends b040185269 (v1.1.0.9000) CLSI as.rsi() fix, better vctrs support, new CI 2020-04-29 14:33:44 +02:00
dr. M.S. (Matthijs) Berends 4be54d608c (v1.0.1.9008) RIVM abbreviations for drugs 2020-04-14 20:38:09 +02:00
dr. M.S. (Matthijs) Berends 219cff403f (v1.0.1.9004) Support dplyr 1.0.0 2020-03-14 14:05:43 +01:00
dr. M.S. (Matthijs) Berends 5e2b294351 (v0.9.0.9026) update documentation 2020-02-17 14:38:01 +01:00
dr. M.S. (Matthijs) Berends 449d9bde35 (v0.9.0.9012) Support for LOINC codes 2020-01-26 20:20:00 +01:00
dr. M.S. (Matthijs) Berends c5f00f4a9f (v0.8.0.9036) complete documentation rewrite 2019-11-28 22:32:17 +01:00
dr. M.S. (Matthijs) Berends 09e2730b53 (v0.8.0.9031) as.mo() improvements 2019-11-15 15:25:03 +01:00
dr. M.S. (Matthijs) Berends 09c4b04cd0 (v0.8.0.9007) Enterobacterales order 2019-10-30 23:02:50 +01:00
dr. M.S. (Matthijs) Berends 3e5ab53209 (v0.8.0.9002) eucast_rules() fix for S. maltophilia 2019-10-23 14:48:25 +02:00
dr. M.S. (Matthijs) Berends 99d0fe76dd (v0.7.1.9088) bug_drug improvement 2019-09-25 15:43:22 +02:00
dr. M.S. (Matthijs) Berends 64d9829030 (v0.7.1.9081) bug_drug fixes 2019-09-23 13:53:50 +02:00
dr. M.S. (Matthijs) Berends 40e6b3e8f6 (v0.7.1.9077) mo codes fix 2019-09-20 14:18:29 +02:00
dr. M.S. (Matthijs) Berends 3596adb295 (v0.7.1.9076) mo codes 2019-09-20 12:33:05 +02:00
dr. M.S. (Matthijs) Berends e2aa4f996b (v0.7.1.9075) new microorganism codes 2019-09-18 15:46:09 +02:00
dr. M.S. (Matthijs) Berends cd178ee569 (v0.7.1.9072) key_antibiotics() for foreign systems 2019-09-12 15:08:53 +02:00
dr. M.S. (Matthijs) Berends 1d423cca89 (v0.7.1.9035) cephalosporins and unit tests 2019-08-11 19:07:26 +02:00
dr. M.S. (Matthijs) Berends 22a206ffd8 (v0.7.1.9030) eucast_rules() fix 2019-08-08 15:52:07 +02:00
dr. M.S. (Matthijs) Berends 3a1f960f89 (v0.7.1.9024) eucast_rules() fix, new MOs 2019-08-06 14:39:22 +02:00
dr. M.S. (Matthijs) Berends 9ac5a34b36 (v0.7.1.9014) MO codes update 2019-07-16 16:14:11 +02:00
dr. M.S. (Matthijs) Berends c652c6913f (v0.7.1.9013) guess_mo_ab speed improvement 2019-07-11 13:39:18 +02:00
dr. M.S. (Matthijs) Berends 68230d0712 (v0.7.1.90012) mo_shortname fix 2019-07-10 21:36:51 +02:00
dr. M.S. (Matthijs) Berends 65c6702b21 (v0.7.1.9004) atc class removal 2019-06-27 11:57:45 +02:00
dr. M.S. (Matthijs) Berends 254745061c (v0.7.0.9008) T. vaginalis, rsi_df 2019-06-13 14:28:46 +02:00
dr. M.S. (Matthijs) Berends 8f674e19bb (v0.7.0.9005) ab algorithm update 2019-06-11 14:18:25 +02:00