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mirror of https://github.com/msberends/AMR.git synced 2024-12-26 20:06:11 +01:00
Commit Graph

95 Commits

Author SHA1 Message Date
1ca40e8d67 (v2.1.1.9079) fix for uti in as.sir() 2024-09-24 15:34:12 +02:00
640888f408 (v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update 2024-07-16 14:53:17 +02:00
bc4f8515e2 new Norwegian link 2024-03-03 23:24:57 +01:00
7be4dabbc0 support veterinary MIC/disk translation 2024-02-24 15:16:52 +01:00
acb534102b new species groups, updated clinical breakpoints 2023-07-08 17:30:05 +02:00
9591688811 documentation update 2023-05-27 10:39:22 +02:00
0bcf55d3b6 improve as.mo() 2023-05-24 15:55:53 +02:00
dad25302f2 make rsi work in more cases, documentation update 2023-02-22 14:38:57 +01:00
45a9697c84 unit tests 2023-02-12 17:10:48 +01:00
bc434db835 bring back antibiogram(), without deps 2023-02-10 16:18:00 +01:00
1a0dc4bf46 revert back to pre-antibiogram 2023-02-09 13:07:39 +01:00
aa48c6bf53 pm fixes 2023-02-08 16:51:41 +01:00
75a4c1ef3e fixes2 2023-02-06 14:34:38 +01:00
f7dd890b79 fixes 2023-02-06 12:38:52 +01:00
9e99e66f01 use dplyr where available, new antibiogram() for WISCA, fixed Salmonella Typhi/Paratyphi 2023-02-06 11:57:22 +01:00
eef00069fd add all options to documentation 2023-01-23 20:07:57 +01:00
Dr. Matthijs Berends
98e62c9af2
Replace RSI with SIR 2023-01-21 23:47:20 +01:00
593d740b84 documentation, file permissions 2023-01-19 12:54:53 +01:00
a0ee86536a unit tests 2023-01-05 14:43:18 +01:00
f619fb683b support new mo codes 2022-12-27 15:16:15 +01:00
7ca44fb756 cleanup and new intro logo 2022-11-13 13:44:25 +01:00
Dr. Matthijs Berends
496c08d851
Implement extensive support for antiviral agents support (#77) 2022-11-13 08:46:10 +01:00
85e2fbe4a3 remove warnings from unit tests 2022-10-19 11:47:57 +02:00
76bcd3528c move object assignment to AMR_env 2022-10-14 13:02:50 +02:00
955f9d7020 documentation fix 2022-10-10 21:03:39 +02:00
Dr. Matthijs Berends
cd2acc4a29
New mo algorithm, prepare for 2.0 2022-10-05 09:12:22 +02:00
3fca703fbf new AMR distance function 2022-08-30 21:48:02 +02:00
2ed5f13880 Fixes #57 2022-08-28 21:13:26 +02:00
4d050aef7c styled, unit test fix 2022-08-28 10:31:50 +02:00
303d61b473 new tibble export 2022-08-27 20:49:37 +02:00
952d16de33 new, automated website 2022-08-21 16:37:20 +02:00
3f2f60ab77 language updates 2022-08-19 12:33:14 +02:00
3b2b2be5f8 (v1.8.0.9002) as.rsi() cleanup, more informative warnings 2022-03-02 15:38:55 +01:00
25cef46c59 (v1.8.0) prerelease 1.8.0 2021-12-23 18:56:28 +01:00
56f1ce328a (v1.7.1.9067) Support for Swedish and Russian 2021-12-12 09:42:03 +01:00
77ba4318ea (v1.7.1.9064) eucast 3.3 for mdro(), major change to repeated calling 2021-12-11 13:41:31 +01:00
1fa3fc6af2 (v1.7.1.9061) bugfix set_ab_names 2021-12-05 23:21:59 +01:00
75965124ef (v1.7.1.9060) bugfix set_ab_names 2021-12-05 23:11:10 +01:00
b747036deb (v1.7.1.9059) bugfix set_ab_names 2021-12-05 22:59:06 +01:00
7965468ccd (v1.7.1.9058) vars selection for set_ab_names() 2021-12-05 22:06:45 +01:00
93a4734b44 (v1.7.1.9040) Support for Danish 2021-09-29 12:12:35 +02:00
d6a916d70b (v1.7.1.9030) unit test 2021-08-29 23:50:45 +02:00
2ab21b7af3 (v1.7.1.9026) updated DDDs 2021-08-19 23:43:02 +02:00
a44283f998 (v1.7.1.9024) unit tests 2021-08-17 14:34:11 +02:00
a2d249962f (v1.7.1.9023) Removed filter_ functions, new set_ab_names(), ATC code update, ab selector update, fixes #46 and fixed #47 2021-08-16 21:54:34 +02:00
16b4c74d44 (v1.7.1.9013) temp fix for ggplot2 bug #4511 2021-07-04 22:10:46 +02:00
83fec69a03 (v1.6.0.9042) translation update 2021-05-17 11:26:12 +02:00
29dbfa2f49 (v1.6.0.9021) join functions update 2021-05-12 18:15:03 +02:00
4a84894f79 (v1.5.0.9016) only_rsi_columns update, documentation 2021-02-08 14:18:42 +01:00
8fda473e49 (v1.5.0.9015) unit test fix, grouped first isolates 2021-02-04 16:48:16 +01:00