 dr. M.S. (Matthijs) Berends
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03294c7901
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fix for Salmonella group A, unit tests
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2023-02-10 16:47:25 +01:00 |
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dr. M.S. (Matthijs) Berends
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bc434db835
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bring back `antibiogram()`, without deps
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2023-02-10 16:18:00 +01:00 |
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dr. M.S. (Matthijs) Berends
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1a0dc4bf46
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revert back to pre-antibiogram
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2023-02-09 13:07:39 +01:00 |
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dr. M.S. (Matthijs) Berends
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9e99e66f01
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use dplyr where available, new `antibiogram()` for WISCA, fixed Salmonella Typhi/Paratyphi
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2023-02-06 11:57:22 +01:00 |
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dr. M.S. (Matthijs) Berends
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19fd0ef121
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sort sir history
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2023-01-23 15:01:21 +01:00 |
Dr. Matthijs Berends
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98e62c9af2
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Replace RSI with SIR
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2023-01-21 23:47:20 +01:00 |
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dr. M.S. (Matthijs) Berends
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593d740b84
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documentation, file permissions
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2023-01-19 12:54:53 +01:00 |
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dr. M.S. (Matthijs) Berends
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ca79068604
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Fix for adding MO's
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2023-01-14 17:10:10 +01:00 |
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dr. M.S. (Matthijs) Berends
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1029aa2fdc
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algorithm improvement
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2023-01-07 14:53:14 +01:00 |
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dr. M.S. (Matthijs) Berends
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2375bfdcb5
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documentation
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2023-01-07 01:51:19 +01:00 |
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dr. M.S. (Matthijs) Berends
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84ed8c32bb
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documentation
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2023-01-06 19:21:04 +01:00 |
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dr. M.S. (Matthijs) Berends
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86e28bafce
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add mo_pathogenicity
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2023-01-06 13:35:37 +01:00 |
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dr. M.S. (Matthijs) Berends
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f619fb683b
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support new mo codes
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2022-12-27 15:16:15 +01:00 |
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dr. M.S. (Matthijs) Berends
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6f4bb603ec
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unit tests
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2022-12-20 22:18:50 +01:00 |
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dr. M.S. (Matthijs) Berends
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f0a2cdbf5e
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update mo algorithm
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2022-12-20 16:14:04 +01:00 |
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dr. M.S. (Matthijs) Berends
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56dad34e68
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update prevalence with new phyla
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2022-12-09 13:37:08 +01:00 |
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dr. M.S. (Matthijs) Berends
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510140fc55
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Updated `mo_gramstain()` to reflect current taxonomy, fixes #83
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2022-12-09 10:30:25 +01:00 |
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dr. M.S. (Matthijs) Berends
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7ca44fb756
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cleanup and new intro logo
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2022-11-13 13:44:25 +01:00 |
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dr. M.S. (Matthijs) Berends
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9444ed6d1d
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fix antibiotics error
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2022-10-30 21:05:46 +01:00 |
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dr. M.S. (Matthijs) Berends
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d40e0ef20b
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completely updated `antibiotics`
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2022-10-30 14:31:45 +01:00 |
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dr. M.S. (Matthijs) Berends
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6ad7857d39
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fix missing R breakpoints
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2022-10-29 14:15:23 +02:00 |
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dr. M.S. (Matthijs) Berends
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85e2fbe4a3
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remove warnings from unit tests
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2022-10-19 11:47:57 +02:00 |
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dr. M.S. (Matthijs) Berends
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43c638d122
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add `mo_current()`
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2022-10-10 10:12:08 +02:00 |
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dr. M.S. (Matthijs) Berends
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b753b84128
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fix for mo type translation
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2022-10-06 12:11:51 +02:00 |
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dr. M.S. (Matthijs) Berends
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b9342d103e
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fix documentation
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2022-10-06 11:33:30 +02:00 |
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Dr. Matthijs Berends
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cd2acc4a29
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New mo algorithm, prepare for 2.0
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2022-10-05 09:12:22 +02:00 |
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dr. M.S. (Matthijs) Berends
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4d050aef7c
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styled, unit test fix
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2022-08-28 10:31:50 +02:00 |
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dr. M.S. (Matthijs) Berends
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303d61b473
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new tibble export
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2022-08-27 20:49:37 +02:00 |
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dr. M.S. (Matthijs) Berends
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952d16de33
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new, automated website
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2022-08-21 16:37:20 +02:00 |
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dr. M.S. (Matthijs) Berends
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3f2f60ab77
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language updates
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2022-08-19 12:33:14 +02:00 |
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dr. M.S. (Matthijs) Berends
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3b2b2be5f8
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(v1.8.0.9002) as.rsi() cleanup, more informative warnings
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2022-03-02 15:38:55 +01:00 |
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dr. M.S. (Matthijs) Berends
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25cef46c59
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(v1.8.0) prerelease 1.8.0
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2021-12-23 18:56:28 +01:00 |
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dr. M.S. (Matthijs) Berends
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56f1ce328a
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(v1.7.1.9067) Support for Swedish and Russian
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2021-12-12 09:42:03 +01:00 |
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dr. M.S. (Matthijs) Berends
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77ba4318ea
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(v1.7.1.9064) eucast 3.3 for mdro(), major change to repeated calling
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2021-12-11 13:41:31 +01:00 |
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dr. M.S. (Matthijs) Berends
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e18c49ed93
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(v1.7.1.9063) not_intrinsic_resistant
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2021-12-09 10:48:25 +01:00 |
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dr. M.S. (Matthijs) Berends
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c8698347cb
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(v1.7.1.9055) added EUCAST 3.3 and all LPSN records numbers
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2021-11-29 10:38:38 +01:00 |
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dr. M.S. (Matthijs) Berends
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a2d249962f
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(v1.7.1.9023) Removed filter_ functions, new set_ab_names(), ATC code update, ab selector update, fixes #46 and fixed #47
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2021-08-16 21:54:34 +02:00 |
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dr. M.S. (Matthijs) Berends
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4e1efd902c
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(v1.7.1.9022) rely on vctrs for ab selectors
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2021-07-23 21:42:11 +02:00 |
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dr. M.S. (Matthijs) Berends
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625a6fb304
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(v1.7.1.9015) removed S3 taxonomic_name again
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2021-07-07 20:34:05 +02:00 |
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dr. M.S. (Matthijs) Berends
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ad10693a1a
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(v1.7.1.9014) rep() for S3 classes
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2021-07-06 16:35:14 +02:00 |
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dr. M.S. (Matthijs) Berends
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5b5741f681
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(v1.7.1.9011) subsetting taxonomy fix
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2021-07-04 15:26:50 +02:00 |
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dr. M.S. (Matthijs) Berends
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3bd50710e8
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(v1.7.1.9010) fix for count_* and proportion_*
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2021-07-04 12:00:41 +02:00 |
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dr. M.S. (Matthijs) Berends
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d04e83f494
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(v1.7.1.9005) ab class selectors for R-3.0 and R-3.1
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2021-06-22 12:16:42 +02:00 |
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dr. M.S. (Matthijs) Berends
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99be4c7e7e
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(v1.7.1.9002) ab class selectors update
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2021-06-14 22:04:04 +02:00 |
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dr. M.S. (Matthijs) Berends
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a13fd98e8b
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(v1.6.0.9063) prepare new release
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2021-05-24 09:00:11 +02:00 |
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dr. M.S. (Matthijs) Berends
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83fec69a03
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(v1.6.0.9042) translation update
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2021-05-17 11:26:12 +02:00 |
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dr. M.S. (Matthijs) Berends
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29dbfa2f49
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(v1.6.0.9021) join functions update
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2021-05-12 18:15:03 +02:00 |
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dr. M.S. (Matthijs) Berends
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7a3139f7cc
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(v1.6.0.9000) custom EUCAST rules
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2021-04-07 08:37:42 +02:00 |
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dr. M.S. (Matthijs) Berends
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4e0a9533ad
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(v1.5.0.9041) SNOMED update
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2021-03-11 21:42:30 +01:00 |
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dr. M.S. (Matthijs) Berends
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ddf88345f1
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(v1.5.0.9028) Updated taxonomy until March 2021
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2021-03-04 23:28:32 +01:00 |