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Commit Graph

329 Commits

Author SHA1 Message Date
44ab53128e (v0.7.0.9006) ab algorithm fix for ATC codes 2019-06-11 15:31:32 +02:00
8f674e19bb (v0.7.0.9005) ab algorithm update 2019-06-11 14:18:25 +02:00
f6c47c8c88 (v0.7.0.9004) pkgdown update 2019-06-09 08:57:54 +02:00
ec48f1d83b (v0.7.0.9003) scale fix 2019-06-08 23:50:06 +02:00
f50d3a5ba1 (v0.7.0.9002) scale fix 2019-06-08 15:00:28 +02:00
f02679fb63 (v0.7.0.9001) new pathovars, small fixes 2019-06-07 22:47:37 +02:00
04c75e8e36 (v0.7.0.9000) new dev version 2019-06-03 20:52:24 +02:00
270aa0dd33 v0.7.0 2019-06-03 17:45:22 +02:00
702da574c0 website update 2019-06-02 19:50:22 +02:00
bd73988f15 (v0.6.1.9053) prerelease fixes 2019-06-02 19:23:19 +02:00
8de0495008 (v0.6.1.9052) website update 2019-06-01 21:28:18 +02:00
5608b27c7c (v0.6.1.9051) support staged install 2019-06-01 20:54:56 +02:00
2667fff8a7 (v0.6.1.9050) support staged install 2019-06-01 20:40:49 +02:00
a665612cb8 (v0.6.1.9049) data creation fix 2019-05-31 21:20:16 +02:00
4bac768557 (v0.6.1.9048) data creation fox 2019-05-31 21:01:14 +02:00
0a6580b4eb (v0.6.1.9047) ggplot fix 2019-05-31 20:48:22 +02:00
4ed27c7e7a (v0.6.1.9046) ggplot fix 2019-05-31 20:25:57 +02:00
f03f71eced (v0.6.1.9045) age test fix 2019-05-31 14:40:15 +02:00
493ae2ba0c (v0.6.1.9044) first_isolate fix for species 2019-05-31 14:25:11 +02:00
1f8ee3ec3e (v0.6.1.9043) age doc fix 2019-05-30 08:51:38 +02:00
8b5e2b030b added boxplot for (grouped) freq() 2019-05-29 19:56:17 +02:00
62e6f41961 website update 2019-05-29 00:36:48 +02:00
27380fa021 fixes for microorganisms.codes 2019-05-28 16:50:40 +02:00
7e0e171512 website update 2019-05-23 19:39:07 +02:00
4bf6a06935 website update 2019-05-23 18:53:18 +02:00
3688fcaabf doc fix 2019-05-23 17:59:43 +02:00
bbf8b611e3 doc fix 2019-05-23 17:35:58 +02:00
60983a1640 added mdr_tb() 2019-05-23 16:58:59 +02:00
07d26cd485 faster determination of abx 2019-05-20 19:12:41 +02:00
6eb08a2ea3 new git flow to repository 2019-05-20 14:16:53 +02:00
4ca00e1868 speed improvement eucast_rules(), support more old MO codes 2019-05-20 12:00:18 +02:00
b0033dae1b website update 2019-05-17 20:22:04 +02:00
a925a5d2f8 add Disqus to website 2019-05-17 13:01:17 +02:00
c3ae6b7699 freq fix 2019-05-17 09:09:18 +02:00
4c3cf85a65 ab_info, other bug fixes 2019-05-16 21:20:00 +02:00
f6bf54b37d documentation fix 2019-05-13 20:16:51 +02:00
2ea0c93e44 documentation fix 2019-05-13 16:35:48 +02:00
cc403169c6 first isolate missing dates fix 2019-05-13 14:56:23 +02:00
0dc0715dc6 CI tests 2019-05-13 12:21:57 +02:00
38a4421450 CI tests 2019-05-13 10:10:16 +02:00
0444c4ed9d website update 2019-05-12 07:22:03 +02:00
fcc77164e9 mdro fix 2019-05-11 23:30:10 +02:00
68cc7ef0d0 new antibiotics 2019-05-10 16:44:59 +02:00
461eec9bac cfta streptococci, codecov.yml 2019-04-09 14:59:17 +02:00
cffb7787d8 cfta streptococci 2019-04-09 10:34:40 +02:00
fbc9191b13 new EUCAST rules algorithm 2019-04-05 18:47:39 +02:00
429814c29b v0.6.0 2019-03-27 11:22:36 +01:00
8a1d384d9c ci fixes 2019-03-26 15:34:04 +01:00
29f444543d added Becker 2019 2019-03-26 14:24:03 +01:00
c6a12266e7 DSMZ data 2019-03-18 14:29:41 +01:00
3e37a0775b ci 2019-03-15 19:58:41 +01:00
fdffc2791b memory for as.mo() 2019-03-15 13:57:25 +01:00
504a042fba uncertainty levels, new WHONET codes 2019-03-12 12:19:27 +01:00
b319b89750 WHONET fix 2019-03-09 08:21:00 +01:00
0c0c6e289b small as.mo fix 2019-03-06 14:39:02 +01:00
5c7a061a5d filter_ab_class fix 2019-03-06 09:32:48 +01:00
74e0ae21fd con WHONET, filter ab class 2019-03-05 22:47:42 +01:00
e835525cf6 unknown codes, rsi fix 2019-03-02 22:47:04 +01:00
c5efb272fd mo_source improvement 2019-03-01 09:34:04 +01:00
2565b60024 rlang dependency, new fungi 2019-02-28 13:56:28 +01:00
cf3bdb54c7 global var fix 2019-02-27 19:02:47 +01:00
95c49fdf79 global var fix 2019-02-27 17:39:39 +01:00
642f6571fe as.mo fix 2019-02-27 14:22:07 +01:00
54162522bd age_groups fix 2019-02-27 11:36:12 +01:00
f9ded23023 as.mo improvement 2019-02-26 12:33:26 +01:00
f25a4b3679 as.mo improvements 2019-02-25 16:07:21 +01:00
c506d2893b as.mo improvements 2019-02-25 15:52:32 +01:00
0ec76cfa98 as.mo improvement 2019-02-25 10:42:57 +01:00
e65d1a3036 as.mo improvement 2019-02-23 21:49:02 +01:00
f16a152d06 as.mo improvements 2019-02-23 18:08:28 +01:00
1a6314769b as.mo improvement 2019-02-23 16:02:31 +01:00
41ad7a22c8 mo_rank mo_url, added Tremellales 2019-02-22 22:12:10 +01:00
6c542268be unit tests 2019-02-21 23:32:30 +01:00
68a9a35ed6 algorithm update 2019-02-21 18:55:52 +01:00
c6e57ca456 website update 2019-02-20 14:18:11 +01:00
13120f465f website update 2019-02-20 13:57:23 +01:00
8dc027309e website update 2019-02-20 10:38:24 +01:00
d4f5d282ff appveyor fix 2019-02-20 00:25:06 +01:00
fb1fc3686c Catalogue of life 2019-02-20 00:04:48 +01:00
54f8258f8c Catalogue of Life, replaces ITIS 2019-02-18 02:33:37 +01:00
9209787a53 SPSS tutorial 2019-02-14 15:18:17 +01:00
efb2af9e3a benchmarks plots 2019-02-14 10:23:51 +01:00
ae44b185e6 fix freq length calculation 2019-02-13 17:14:59 +01:00
30ff770c93 freq update 2019-02-12 15:38:31 +01:00
76ed26d27e resistance predict update 2019-02-11 10:27:10 +01:00
70105086c8 as.rsi warning, site update 2019-02-10 08:42:28 +01:00
c56b179857 as.rsi warning, site update 2019-02-09 22:16:24 +01:00
ed30312048 mo codes for WHONET 2019-02-08 16:06:54 +01:00
3d3366faf7 is.rsi.eligible update 2019-02-04 18:04:29 +01:00
587e00b7be is.rsi.eligible update 2019-02-04 12:24:07 +01:00
cd07d65734 freq and website update 2019-02-01 16:55:55 +01:00
d75ec01f92 website update 2019-01-30 19:52:58 +01:00
0b3dc0231f freq fix 2019-01-30 16:00:55 +01:00
bb7c9cfefe website update 2019-01-29 21:25:16 +01:00
e6489483c7 website update 2019-01-29 20:38:45 +01:00
3efb54d016 freq update 2019-01-29 20:20:09 +01:00
6aae206320 WHONET/EARS-Net support 2019-01-29 00:06:50 +01:00
f6336fdd89 quasiquotation for freq() 2019-01-28 11:20:32 +01:00
e76961a66b less deps 2019-01-27 19:30:40 +01:00
a2d3ea280a text updates 2019-01-27 13:55:23 +01:00
18b75356a9 re-add atc_ddd and atc_groups 2019-01-27 13:33:43 +01:00
6ec940bc75 atc_ functions 2019-01-27 10:53:59 +01:00
b39055c018 deprecated fix 2019-01-27 00:33:58 +01:00
f836722269 atc_ functions 2019-01-26 23:22:56 +01:00
5493e1f05d website update 2019-01-25 20:47:57 +01:00
f4ff98b470 WHO update, antibiotics update 2019-01-25 13:18:41 +01:00
3ec44b6e0c website update 2019-01-22 19:55:11 +01:00
9529d097b6 as.mo 2019-01-21 21:24:40 +01:00
46dcc7e2e8 set_mo_source 2019-01-21 15:53:01 +01:00
c6c3088e9f select() fix for freq 2019-01-17 12:08:04 +01:00
1ee710c861 resistance predict 2019-01-15 16:51:49 +01:00
8db87a15e9 fixes 2019-01-15 16:38:54 +01:00
046d195064 resistance predict 2019-01-15 12:45:24 +01:00
cda7087722 website update 2019-01-12 19:31:30 +01:00
3661df7365 direct warning if failing as.mo 2019-01-12 16:45:20 +01:00
5aad26035c edited g.test 2019-01-12 11:06:58 +01:00
641d866db2 guess_ab_col, benchmarks 2019-01-11 20:37:23 +01:00
193a2d2863 EUCAST update, as.mo bugfix for empty vlaues 2019-01-08 16:23:45 +01:00
bc15f660d6 guess_ab() 2019-01-06 20:23:49 +01:00
d0c679e884 R release test 2019-01-05 22:18:49 +01:00
2c798547bf language 2019-01-05 21:40:04 +01:00
4324337508 debian locale-gen 2019-01-05 20:39:20 +01:00
6652f7d82b fix warnings 2019-01-04 09:49:42 +01:00
6b2d464f8c big website update, licence txt update 2019-01-02 23:24:07 +01:00
4255707cb7 website update 2018-12-31 14:30:06 +01:00
154fec27dd website update 2018-12-31 12:03:35 +01:00
2e4d703338 eucast rules fix, 1st isolate fix, website update 2018-12-31 01:48:53 +01:00
df6b334c6f website update 2018-12-30 10:27:28 +01:00
92a32b62a7 new website, freq updates 2018-12-29 22:24:19 +01:00