Commit Graph

653 Commits

Author SHA1 Message Date
dr. M.S. (Matthijs) Berends 7ebc534ccd (v1.5.0.9003) verbose output of mdro() 2021-01-15 22:44:52 +01:00
dr. M.S. (Matthijs) Berends 6745f3fb17 (v1.5.0.9002) doc update 2021-01-14 15:51:41 +01:00
dr. M.S. (Matthijs) Berends bc00470dca (v1.5.0.9001) more informative argument errors 2021-01-14 14:41:44 +01:00
dr. M.S. (Matthijs) Berends d014955ce0 (v.1.5.0.9000) implementation of EUCAST rules v11 (2021) 2021-01-12 22:08:04 +01:00
dr. M.S. (Matthijs) Berends 3b84b8be75 v1.5.0 2021-01-06 11:16:17 +01:00
dr. M.S. (Matthijs) Berends 1563dcd1aa (v1.4.0.9062) unit test fix 2021-01-04 14:46:17 +01:00
dr. M.S. (Matthijs) Berends a7ea4c9d2f (v1.4.0.9061) ab class selector fix 2021-01-04 14:16:09 +01:00
dr. M.S. (Matthijs) Berends 8d117820b8 (v1.4.0.9060) ab class selector fix 2021-01-04 13:39:06 +01:00
dr. M.S. (Matthijs) Berends c9de74c81a (v1.4.0.9059) ab class selector fix 2021-01-04 12:29:25 +01:00
dr. M.S. (Matthijs) Berends 82cfa24ea4 (v1.4.0.9058) GH actions update 2021-01-04 11:27:37 +01:00
dr. M.S. (Matthijs) Berends daac96fefe (v1.4.0.9057) GH actions update 2021-01-04 09:49:42 +01:00
dr. M.S. (Matthijs) Berends 63a4dda467 (v1.4.0.9056) subsetting ab class selectors for base R 2021-01-03 23:40:05 +01:00
dr. M.S. (Matthijs) Berends ecac443f86 (v1.4.0.9055) more unit tests 2020-12-31 13:44:58 +01:00
dr. M.S. (Matthijs) Berends 10dec96058 (v1.4.0.9054) unit test update 2020-12-29 22:06:01 +01:00
dr. M.S. (Matthijs) Berends d3f007bf65 (v1.4.0.9053) unit test old R versions 2020-12-29 21:23:01 +01:00
dr. M.S. (Matthijs) Berends 526f8afb08 (v1.4.0.9052) replaced all sapply's with type-safe vapply's 2020-12-28 22:24:33 +01:00
dr. M.S. (Matthijs) Berends ccf13dd6c0 (v1.4.0.9051) ab class 2020-12-27 23:19:41 +01:00
dr. M.S. (Matthijs) Berends afc325c314 (v1.4.0.9050) ab selectors base R 2020-12-27 20:32:40 +01:00
dr. M.S. (Matthijs) Berends 175e33abba (v1.4.0.9049) unit tests 2020-12-27 15:07:01 +01:00
dr. M.S. (Matthijs) Berends ed198916bf (v1.4.0.9048) AmpC de-repressed cephalo-resistant mutants 2020-12-27 14:23:11 +01:00
dr. M.S. (Matthijs) Berends 8b52f9b1be (v1.4.0.9047) unit tests 2020-12-27 00:30:28 +01:00
dr. M.S. (Matthijs) Berends acbd0cf7ca (v1.4.0.9046) get_episode 2020-12-27 00:07:00 +01:00
dr. M.S. (Matthijs) Berends 291f802be3 (v1.4.0.9045) unit tests 2020-12-25 00:06:11 +01:00
dr. M.S. (Matthijs) Berends df37584189 (v1.4.0.9044) mo tibble printing, mo_shortname() fix 2020-12-24 23:29:10 +01:00
dr. M.S. (Matthijs) Berends 128ebcfd62 (v1.4.0.9043) documentation update 2020-12-22 00:51:17 +01:00
dr. M.S. (Matthijs) Berends ee70883246 (v1.4.0.9042) auto dark theme website 2020-12-21 22:46:29 +01:00
dr. M.S. (Matthijs) Berends 81af41da3a (v1.4.0.9041) updates based on review 2020-12-17 16:22:25 +01:00
dr. M.S. (Matthijs) Berends 1faa816090 (v1.4.0.9040) LA-MRSA / CA-MRSA 2020-12-16 16:18:53 +01:00
dr. M.S. (Matthijs) Berends 203bc20eb0 (v1.4.0.9039) more unit tests 2020-12-13 20:44:32 +01:00
dr. M.S. (Matthijs) Berends ac22b8d5c1 (v1.4.0.9038) docu update 2020-12-13 13:44:04 +01:00
dr. M.S. (Matthijs) Berends c8bcecf232 (v1.4.0.9037) random_* functions 2020-12-12 23:17:29 +01:00
dr. M.S. (Matthijs) Berends 2edd3339db (v1.4.0.9036) more unit tests 2020-12-11 12:17:23 +01:00
dr. M.S. (Matthijs) Berends 23ddc6004b (v1.4.0.9035) eucast_rules fix 2020-12-11 09:05:03 +01:00
dr. M.S. (Matthijs) Berends c9fc7e8a45 (v1.4.0.9034) MIC printing update 2020-12-09 09:40:50 +01:00
dr. M.S. (Matthijs) Berends 2145f1d1ba (v1.4.0.9033) documentation update 2020-12-08 12:37:25 +01:00
dr. M.S. (Matthijs) Berends 1bdb136b3a (v1.4.0.9032) auto-data guessing for functions 2020-12-07 16:06:42 +01:00
dr. M.S. (Matthijs) Berends fdf29e6c5b (v1.4.0.9031) as.ab() fix 2020-12-03 22:30:14 +01:00
dr. M.S. (Matthijs) Berends e03b3c96d3 (v1.4.0.9030) as.mo() fix for known lab codes 2020-12-03 16:59:04 +01:00
dr. M.S. (Matthijs) Berends 4c114ff4b4 (v1.4.0.9029) grey background for backticks, like readr pkg 2020-12-01 16:59:57 +01:00
dr. M.S. (Matthijs) Berends 0e1fdb7dd7 (v1.4.0.9027) docu update 2020-11-25 20:26:02 +01:00
dr. M.S. (Matthijs) Berends 7b42b15c90 (v1.4.0.9026) docu update 2020-11-24 11:47:54 +01:00
dr. M.S. (Matthijs) Berends b045b571a6 (v1.4.0.9025) is_new_episode() 2020-11-23 21:50:27 +01:00
dr. M.S. (Matthijs) Berends 363218da7e (v1.4.0.9024) is_new_episode() 2020-11-17 16:57:41 +01:00
dr. M.S. (Matthijs) Berends 0800d33228 (v1.4.0.9023) unit tests 2020-11-17 11:53:56 +01:00
dr. M.S. (Matthijs) Berends 93428415d0 (v1.4.0.9022) small bugfix 2020-11-16 20:02:20 +01:00
dr. M.S. (Matthijs) Berends deefce9520 (v1.4.0.9021) more robust class setting 2020-11-16 16:57:55 +01:00
dr. M.S. (Matthijs) Berends 05fb213a7c (v1.4.0.9020) mo_is_intrinsic_resistant 2020-11-16 11:03:24 +01:00
dr. M.S. (Matthijs) Berends 9666b78ea7 (v1.4.0.9019) documentation update 2020-11-12 11:07:23 +01:00
dr. M.S. (Matthijs) Berends f2edac3b67 (v1.4.0.9018) reference_data in as.rsi() 2020-11-11 18:54:03 +01:00
dr. M.S. (Matthijs) Berends 01d9522434 (v1.4.0.9017) stringsAsFactors definitions 2020-11-11 16:49:27 +01:00
dr. M.S. (Matthijs) Berends 68ac39aa7f (v1.4.0.9016) as.rsi() older R versions 2020-11-10 19:59:14 +01:00
dr. M.S. (Matthijs) Berends 15c732703d (v1.4.0.9015) bugfix 2020-11-10 16:35:56 +01:00
dr. M.S. (Matthijs) Berends dd5a0319ef (v1.4.0.9014) bugfix 2020-11-09 15:18:36 +01:00
dr. M.S. (Matthijs) Berends d3b1d33210 (v1.4.0.9013) is_gram_negative/positive update 2020-11-09 13:07:02 +01:00
dr. M.S. (Matthijs) Berends 423879c034 (v1.4.0.9012) reference_df fix 2020-11-05 01:11:49 +01:00
dr. M.S. (Matthijs) Berends 5a607abb36 (v1.4.0.9011) message formatting 2020-10-27 15:56:51 +01:00
dr. M.S. (Matthijs) Berends 3d096d96c2 (v1.4.0.9009) bugfix for older R version 2020-10-26 15:53:31 +01:00
dr. M.S. (Matthijs) Berends 760d69a3e0 (v1.4.0.9008) like variations 2020-10-26 12:23:03 +01:00
dr. M.S. (Matthijs) Berends f720c9ba0b (v1.4.0.9007) bugfix 2020-10-21 15:28:48 +02:00
dr. M.S. (Matthijs) Berends 8f868388ce (v1.4.0.9006) bugfix 2020-10-21 14:40:00 +02:00
dr. M.S. (Matthijs) Berends 9109b9dd62 (v1.4.0.9005) bugfix 2020-10-21 13:07:23 +02:00
dr. M.S. (Matthijs) Berends ade9f8bafd (v1.4.0.9004) bugfix 2020-10-21 11:50:43 +02:00
dr. M.S. (Matthijs) Berends 2ef7dfc8a3 (v1.4.0.9003) CoNS update 2020-10-20 21:00:57 +02:00
dr. M.S. (Matthijs) Berends ddae8085e1 (v1.4.0.9002) bugfix 2020-10-19 20:44:45 +02:00
dr. M.S. (Matthijs) Berends 4e9ccb4435 (v1.4.0.9001) is_gram_positive(), is_gram_negative(), parameter hardening 2020-10-19 17:09:19 +02:00
dr. M.S. (Matthijs) Berends 833a1be36d (v1.4.0.9000) more extensive unit tests 2020-10-15 09:46:41 +02:00
dr. M.S. (Matthijs) Berends 28e77680c5 (v1.4.0) matching score update 2020-10-08 11:16:03 +02:00
dr. M.S. (Matthijs) Berends c04dc852cf (v1.3.0.9039) lifecycle updates, added excess kurtosis 2020-10-04 21:02:16 +02:00
dr. M.S. (Matthijs) Berends baf510183c (v1.3.0.9038) prefinal 1.4.0 2020-10-04 19:26:43 +02:00
dr. M.S. (Matthijs) Berends 3136bc54aa (v1.3.0.9037) pre-release 2020-09-30 10:54:23 +02:00
dr. M.S. (Matthijs) Berends ac1c78c793 (v1.3.0.9036) documentation fix 2020-09-30 10:24:53 +02:00
dr. M.S. (Matthijs) Berends 4e0374af29 (v1.3.0.9035) mdro() for EUCAST 3.2, examples cleanup 2020-09-29 23:35:46 +02:00
dr. M.S. (Matthijs) Berends 68e6e1e329 (v1.3.0.9034) eucast_rules summary fix 2020-09-29 10:40:25 +02:00
dr. M.S. (Matthijs) Berends 36ec8b0d81 (v1.3.0.9033) skimr fix 2020-09-28 11:00:59 +02:00
dr. M.S. (Matthijs) Berends 519aada54f (v1.3.0.9032) support skimr 2020-09-28 01:08:55 +02:00
dr. M.S. (Matthijs) Berends 22f6ceb3e4 (v1.3.0.9031) matching score update 2020-09-26 16:51:17 +02:00
dr. M.S. (Matthijs) Berends 050a9a04fb (v1.3.0.9030) matching score update 2020-09-26 16:26:01 +02:00
dr. M.S. (Matthijs) Berends 9667c2994f (v1.3.0.9029) eucast rules fix, unique() 2020-09-25 14:44:50 +02:00
dr. M.S. (Matthijs) Berends 1d982a82b4 (v1.3.0.9028) eucast fix 2020-09-24 12:38:13 +02:00
dr. M.S. (Matthijs) Berends 027215ed94 (v1.3.0.9027) unit tests 2020-09-24 00:50:23 +02:00
dr. M.S. (Matthijs) Berends c19095a3d5 (v1.3.0.9026) eucast expert rules 3.2 2020-09-24 00:30:11 +02:00
dr. M.S. (Matthijs) Berends a1411ddafc (v1.3.0.9025) optimalisation 2020-09-19 15:15:57 +02:00
dr. M.S. (Matthijs) Berends 2f0186ace2 (v1.3.0.9024) optimalisation 2020-09-19 12:57:51 +02:00
dr. M.S. (Matthijs) Berends d049cce69b (v1.3.0.9023) optimalisation 2020-09-19 11:54:01 +02:00
dr. M.S. (Matthijs) Berends 4e40e42011 (v1.3.0.9022) mo_matching_score(), poorman update, as.rsi() fix 2020-09-18 16:05:53 +02:00
dr. M.S. (Matthijs) Berends 89401ede9f (v1.3.0.9021) typo 2020-09-14 20:41:19 +02:00
dr. M.S. (Matthijs) Berends ab60f613aa (v1.3.0.9020) fix for uncertainty in as.mo() 2020-09-14 19:41:48 +02:00
dr. M.S. (Matthijs) Berends 354c606d6a (v1.3.0.9019) small fix 2020-09-14 14:08:07 +02:00
dr. M.S. (Matthijs) Berends 7b6dd676f7 (v1.3.0.9018) language corrections 2020-09-14 12:21:23 +02:00
dr. M.S. (Matthijs) Berends 0f6760d427 (v1.3.0.9017) small fix 2020-09-12 13:54:21 +02:00
dr. M.S. (Matthijs) Berends 3ff871afeb (v1.3.0.9016) mo_uncertainties() overhaul 2020-09-12 08:49:01 +02:00
dr. M.S. (Matthijs) Berends 68e9cb78e9 (v1.3.0.9015) as.mo() speedup for valid taxonomic names 2020-09-03 20:59:21 +02:00
dr. M.S. (Matthijs) Berends c4b87fe241 (v1.3.0.9014) as.mo() speed improvement 2020-09-03 12:31:48 +02:00
dr. M.S. (Matthijs) Berends 18e52f2725 (v1.3.0.9013) data sets vignette update 2020-08-29 21:52:51 +02:00
dr. M.S. (Matthijs) Berends 4f72b3bfc4 (v1.3.0.9012) data sets vignette update 2020-08-29 21:41:46 +02:00
dr. M.S. (Matthijs) Berends 50b953b141 (v1.3.0.9011) suggests pkg update 2020-08-29 12:04:23 +02:00
dr. M.S. (Matthijs) Berends 74a172ef55 (v1.3.0.9010) S3 extensions without dependencies 2020-08-28 21:55:47 +02:00
dr. M.S. (Matthijs) Berends 81af0b001c (v1.3.0.9009) documentation update 2020-08-26 16:13:40 +02:00
dr. M.S. (Matthijs) Berends 9b8db57c65 (v1.3.0.9008) also tibble printing for ab 2020-08-26 15:34:12 +02:00
dr. M.S. (Matthijs) Berends 5e45fdcf2a (v1.3.0.9007) tibble printing 2020-08-26 11:33:54 +02:00
dr. M.S. (Matthijs) Berends c8c8bb4e3a (v1.3.0.9006) website update 2020-08-21 11:40:13 +02:00
dr. M.S. (Matthijs) Berends 818d0441e0 (v1.3.0.9005) website update 2020-08-17 21:49:58 +02:00
dr. M.S. (Matthijs) Berends dab017a50f (v1.3.0.9004) data sets, as.disk() improvement 2020-08-16 21:38:42 +02:00
dr. M.S. (Matthijs) Berends e73f0e211c (v1.3.0.9003) as.rsi() speed improvement 2020-08-15 12:54:47 +02:00
dr. M.S. (Matthijs) Berends 08d62bb5d5 (v1.3.0.9002) intrinsic_resistant data set 2020-08-14 13:36:10 +02:00
dr. M.S. (Matthijs) Berends 7d16bec21f (v1.3.0.9001) website update 2020-08-10 12:46:03 +02:00
dr. M.S. (Matthijs) Berends 0d9602a6a9 (v1.3.0.9000) support across() in as.rsi() 2020-08-10 11:44:58 +02:00
dr. M.S. (Matthijs) Berends c5f7294381 (v1.3.0) skip more CRAN tests 2020-07-31 10:50:08 +02:00
dr. M.S. (Matthijs) Berends 8ff46eefe9 (v1.3.0) small MIC fix 2020-07-30 12:37:01 +02:00
dr. M.S. (Matthijs) Berends ea4e5e5b81 (v1.3.0) v1.3.0 2020-07-29 13:48:50 +02:00
dr. M.S. (Matthijs) Berends de0f7b8950 (v1.2.0.9040) conserve_capped_values for as.rsi() 2020-07-29 12:47:58 +02:00
dr. M.S. (Matthijs) Berends e7def0aa4c (v1.2.0.9039) conserve_capped_values for as.rsi() 2020-07-29 11:46:59 +02:00
dr. M.S. (Matthijs) Berends 453f7f210b (v1.2.0.9038) CLSI 2019 fix 2020-07-29 10:33:47 +02:00
dr. M.S. (Matthijs) Berends 1b65d76cfb (v1.2.0.9037) survey on website 2020-07-28 18:39:57 +02:00
dr. M.S. (Matthijs) Berends ab2b359e6b (v1.2.0.9036) unit test fix 2020-07-22 12:29:51 +02:00
dr. M.S. (Matthijs) Berends 09fba38ea6 (v1.2.0.9035) as.mo() speed improvement 2020-07-22 10:24:23 +02:00
dr. M.S. (Matthijs) Berends 6ab468362d (v1.2.0.9034) code cleaning 2020-07-13 09:17:24 +02:00
dr. M.S. (Matthijs) Berends c0cf7ab02b (v1.2.0.9033) speed improvement mdro(), filter_ab_class() 2020-07-12 11:43:31 +02:00
dr. M.S. (Matthijs) Berends 1d66b5c43c (v1.2.0.9032) Permanently move to GitHub 2020-07-09 20:07:39 +02:00
dr. M.S. (Matthijs) Berends a438dcc884 (v1.2.0.9031) GitHub Actions 2020-07-09 16:11:56 +02:00
dr. M.S. (Matthijs) Berends 7baa9d3658 (v1.2.0.9030) GitHub Actions 2020-07-09 14:12:11 +02:00
dr. M.S. (Matthijs) Berends cf3c3ee8f7 (v1.2.0.9029) GitHub actions 2020-07-08 22:55:17 +02:00
dr. M.S. (Matthijs) Berends d39d32448b (v1.2.0.9028) GitHub actions 2020-07-08 20:43:25 +02:00
dr. M.S. (Matthijs) Berends 5195e0b9da (v1.2.0.9027) move to github 2020-07-08 17:48:57 +02:00
dr. M.S. (Matthijs) Berends 76fc8e1b14 (v1.2.0.9026) move to github 2020-07-08 14:48:06 +02:00
dr. M.S. (Matthijs) Berends 2134fc76e2 (v1.2.0.9025) AMR calculation speed improvement 2020-07-03 12:14:41 +02:00
dr. M.S. (Matthijs) Berends 46cf423eab (v1.2.0.9024) AMR calculation speed improvement 2020-07-03 10:51:55 +02:00
dr. M.S. (Matthijs) Berends 152ac5bcad (v1.2.0.9023) ab_from_text() improvement 2020-07-02 21:12:52 +02:00
dr. M.S. (Matthijs) Berends 298e67a45b (v1.2.0.9022) as.ab() improvement 2020-07-01 16:21:36 +02:00
dr. M.S. (Matthijs) Berends afc660dc33 (v1.2.0.9021) only progressbar in interactive sessions 2020-07-01 11:51:26 +02:00
dr. M.S. (Matthijs) Berends cc6ce0a938 (v1.2.0.9020) ab_from_text() improvement 2020-07-01 11:23:05 +02:00
dr. M.S. (Matthijs) Berends 329a0eb0b6 (v1.2.0.9019) ab_from_text() dose and administration 2020-07-01 11:07:01 +02:00
dr. M.S. (Matthijs) Berends 240d817b4e (v1.2.0.9018) ab_from_text() improvement 2020-06-26 13:15:46 +02:00
dr. M.S. (Matthijs) Berends 4f6f056077 (v1.2.0.9017) ab_from_text() improvement 2020-06-26 12:31:27 +02:00
dr. M.S. (Matthijs) Berends b31003c0b6 (v1.2.0.9016) fix in rsi_calc() 2020-06-26 10:21:22 +02:00
dr. M.S. (Matthijs) Berends 033ca49817 (v1.2.0.9015) ab_from_text() 2020-06-25 19:20:50 +02:00
dr. M.S. (Matthijs) Berends 344bbd57f4 (v1.2.0.9014) ab_from_text() 2020-06-25 17:34:50 +02:00
dr. M.S. (Matthijs) Berends 8a66e475d7 (v1.2.0.9013) unit test fix 2020-06-22 13:18:40 +02:00
dr. M.S. (Matthijs) Berends 779a4e8348 (v1.2.0.9012) mo_domain(), improved error handling 2020-06-22 12:18:53 +02:00
dr. M.S. (Matthijs) Berends 93a158aebd (v1.2.0.9011) mo_domain(), improved error handling 2020-06-22 11:18:40 +02:00
dr. M.S. (Matthijs) Berends e88d7853f5 (v1.2.0.9010) documentation fix 2020-06-17 21:35:10 +02:00
dr. M.S. (Matthijs) Berends f18389d5d6 (v1.2.0.9009) pkg dependency fix 2020-06-17 16:29:10 +02:00
dr. M.S. (Matthijs) Berends ac12392da3 (v1.2.0.9008) ab_class improvement 2020-06-17 15:14:37 +02:00
dr. M.S. (Matthijs) Berends c4d7412f36 (v1.2.0.9007) Tidyverse selections 2020-06-17 01:39:30 +02:00
dr. M.S. (Matthijs) Berends 4f94e1312f (v1.2.0.9006) improve auto col-determination 2020-06-11 20:03:13 +02:00
dr. M.S. (Matthijs) Berends 352508889c (v1.2.0.9005) data set fix 2020-06-09 16:31:44 +02:00
dr. M.S. (Matthijs) Berends 8b692ecfcf (v1.2.0.9004) rsi_df() fix for groups 2020-06-09 16:18:03 +02:00
dr. M.S. (Matthijs) Berends 40221e5244 (v1.2.0.9003) better terminal colour support 2020-06-05 13:56:05 +02:00
dr. M.S. (Matthijs) Berends 2c8d600914 (v1.2.0.9002) fix for joins 2020-06-03 14:33:55 +02:00
dr. M.S. (Matthijs) Berends 5dc4c96b7d (v1.2.0.9001) filter_ab_class() update 2020-06-03 11:48:00 +02:00