b388e3fee7
Support for German and Spanish microorganism properties, cleanup
2018-09-04 11:33:30 +02:00
e25dd0e282
fix for joins
2018-09-03 10:04:49 +02:00
75fe4d401f
new MOs, cleanup
2018-09-01 21:19:46 +02:00
5965d3c794
replaced bactid by mo
2018-08-31 13:36:19 +02:00
98ff131680
support for older versions of ggplot2
2018-08-29 16:39:28 +02:00
d654444c8e
re added nrow
2018-08-29 16:35:32 +02:00
d9e68e0a50
ggplot_rsi example update, more unit tests
2018-08-29 16:25:57 +02:00
029157b3be
163 new trade names, added ab_tradenames
2018-08-29 12:27:37 +02:00
972fc4f6c7
ab_* functions, mo_* functions, 180 new microorganisms, speed improvement for bactid
2018-08-28 13:51:13 +02:00
2acdb1981c
atc and bactid functions, readme update
2018-08-25 22:01:14 +02:00
baaf4cc3e1
few extra tests
2018-08-24 14:18:38 +02:00
a100d07da6
removed ratio, better rsi_calc, update for freq
2018-08-24 11:08:20 +02:00
febd0ca885
geom_rsi - any parameter
2018-08-23 21:27:15 +02:00
da5379c881
quasiquotation, alpha for geom_rsi
2018-08-23 00:40:36 +02:00
3e87c8f409
count_* functions
2018-08-22 00:02:26 +02:00
59ce1eb1b1
ggplot_rsi improvements
2018-08-13 16:42:37 +02:00
dba06c3295
abname improvement, small fixes
2018-08-13 11:00:53 +02:00
ce2cdb9309
support groups for portion_df, update README
2018-08-12 22:34:03 +02:00
e5d32cafe0
new unit tests for ggplot, small fixes
2018-08-12 17:44:06 +02:00
1ba7d883fe
new ggplot enhancement
2018-08-11 21:30:00 +02:00
53fa198e35
new portion functions
2018-08-10 15:01:05 +02:00
ae2433a020
rsi family for resistance analysis
2018-08-03 14:49:29 +02:00
227121af3d
add Dialister to microorganisms
2018-08-03 11:46:06 +02:00
db5a0d32a5
typos of Becker algorithm
2018-08-03 10:58:48 +02:00
bd9bcfef78
thesis advisors
2018-08-03 09:59:39 +02:00
6262315527
Becker classification
...
Lancefield classification
Added Lancefield groups to `microorganisms` data set
2018-08-02 13:15:45 +02:00
edd2dd09dc
rsi for freq
2018-08-01 22:37:28 +02:00
d8f70a74de
clipboard error
2018-08-01 10:32:24 +02:00
a59d0661f7
check CMD error
2018-08-01 09:45:11 +02:00
7c667eb732
emph guess_bactid
2018-08-01 08:03:31 +02:00
211e3bae14
remove reshape2 dependency
2018-07-30 01:18:40 +02:00
510e8f22aa
more unit tests
2018-07-30 00:57:49 +02:00
d0a115d995
bactid speed improvement
2018-07-30 00:14:06 +02:00
826694323b
new functions R, RI, SI, S
2018-07-29 22:14:51 +02:00
8421e3f005
more mic classes
2018-07-28 10:48:27 +02:00
feab1cad6b
small fixes
2018-07-28 09:34:03 +02:00
498e88b5cf
improvement for forecasting resistance
2018-07-26 16:30:42 +02:00
d9e204031d
update to septic_patients, speed improvements
2018-07-25 14:17:04 +02:00
03a3cb397b
clipboard update
2018-07-23 15:09:19 +02:00
8421638b60
new class bactid
2018-07-23 14:14:03 +02:00
9920ac8a5c
fix for keyab, more examples
2018-07-23 10:35:39 +02:00
ad662d7bab
new col names for key_antibiotics
2018-07-19 15:11:23 +02:00
0d64c166f0
keyab fixes
2018-07-17 19:51:09 +02:00
2a4d759fbc
check fails
2018-07-17 14:48:11 +02:00
5cb9c541f8
new algorithm key abs
2018-07-17 13:02:05 +02:00
a5a4354651
speed improvements
2018-07-17 10:32:26 +02:00
715a7630ca
support format.freq
2018-07-16 16:41:48 +02:00
6eaf33baf3
speed improvements
2018-07-15 22:56:41 +02:00
b6655f6454
Welcome C++!
2018-07-13 17:23:46 +02:00
a28289562a
remove print function, out of scope
2018-07-11 20:12:19 +02:00
e3e10c2e88
fix for macOS and older tidyr versions
2018-07-11 12:34:02 +02:00
f63414d519
new g.test, extra unit tests
2018-07-10 12:27:07 +02:00
fc30d3fb13
freq: support for table
2018-07-09 14:02:58 +02:00
14b990d769
kurtosis, skewness, start with ML
2018-07-08 22:14:55 +02:00
34ee0247ac
addins and small improvements to microorganisms dataset
2018-07-04 17:20:03 +02:00
10fce8382c
include IQR and MAD in freq
2018-07-03 11:30:40 +02:00
3d0d21f322
rename vector2ratio to ratio
2018-07-02 11:14:20 +02:00
2ca01e2d8d
remove rlang dependency
2018-07-01 22:23:34 +02:00
3527894b49
new g.test() and edited freq()
2018-07-01 21:40:37 +02:00
f7af8a81da
update man page
2018-06-29 09:06:47 +02:00
6ee713cec1
move tbl_parse_guess
2018-06-29 08:56:03 +02:00
649a8025aa
add clipboard functions again
2018-06-27 15:54:56 +02:00
a9bd5472d0
top_freq
2018-06-20 14:47:37 +02:00
4a027f3c34
extra unit tests, add row.names to freq
2018-06-19 15:20:14 +02:00
bdc860e29c
atc_groups
2018-06-19 10:05:38 +02:00
0a5898b17d
fix for printing tibbles, improve guess_bactid
2018-06-08 12:06:54 +02:00
efdf5a3dc5
prevent dplyr:row_number warning
2018-05-31 14:19:25 +02:00
MS Berends
7a6d5fb6b7
rsi/mic fix
2018-05-31 09:02:49 +02:00
5593aee19e
edit as.rsi algor.
2018-05-30 23:02:16 +02:00
uscloud
dcc26dd942
Update freq function
2018-05-22 16:34:22 +02:00
MS Berends
0d80647d41
fix SI and IR
2018-05-16 11:19:45 +02:00
f05e7178cb
added vignette of freq
2018-05-09 11:44:46 +02:00
25b3346d9a
edit methodology of rsi
2018-05-03 10:19:02 +02:00
c0fc82c794
Added function n_rsi
2018-05-02 14:56:25 +02:00
6eaf594cb7
update data info
2018-05-01 09:57:50 +02:00
19ccc51f40
remove clipboard functions
2018-05-01 09:36:45 +02:00
6fa93fc286
fix clipboard check
2018-04-30 16:54:37 +02:00
8fe70d5652
Fix Latex PDF error
2018-04-30 16:24:11 +02:00
970e3ed7f1
EUCAST rules for MDRO
2018-04-25 15:33:58 +02:00
0b22ddef8e
more unit tests
2018-04-20 13:45:34 +02:00
82fec5cc51
Try to support older R versions
2018-04-19 14:10:57 +02:00
e7396b8f39
Try to support older R versions
2018-04-19 12:50:23 +02:00
d79132b29f
Try to support older R versions
2018-04-18 15:41:27 +02:00
4b5530ed64
Try to support older R versions
2018-04-18 15:19:00 +02:00
a814d82b4b
try to support older R versions
2018-04-18 14:50:16 +02:00
2509e2413d
MDRO, freq tables, new print format for tibbles
2018-04-18 12:24:54 +02:00
3165c50d06
more MOs
2018-04-03 16:07:32 +02:00
07bdd61241
update dependencies
2018-04-02 16:05:09 +02:00
c182a9673d
fix clipboard on linux
2018-04-02 11:11:21 +02:00
MS Berends
b7f29aa748
Update first_isolates.R
2018-03-29 15:15:31 +02:00
MS Berends
f1dbed6fcc
Update clipboard.R
2018-03-29 14:56:40 +02:00
MS Berends
136272cb71
Update clipboard.R
2018-03-29 14:16:42 +02:00
MS Berends
fd04df5f9d
Update clipboard.R
2018-03-29 13:23:02 +02:00
MS Berends
2f4823f7a7
Update clipboard.R
2018-03-29 13:10:55 +02:00
6f7730dcaa
add tests using testthat
2018-03-27 17:43:42 +02:00
MS Berends
9637b43357
Remove Windows only function
2018-03-23 14:59:02 +01:00
MS Berends
1b3daebc84
Remove Windows only function
2018-03-23 14:52:56 +01:00
53464ff1c8
- For functions first_isolate, EUCAST_rules the antibiotic column names are case-insensitive
...
- Functions `first_isolate`, `EUCAST_rules` and `rsi_predict` supports tidyverse-like evaluation of parameters (no need to quote columns them anymore)
- Functions `clipboard_import` and `clipboard_export` as helper functions to quickly copy and paste from/to software like Excel and SPSS
- Renamed dataset `bactlist` to `microorganisms`
2018-03-23 14:46:02 +01:00
fe803f7279
use guess_bactid for GLIMS codes
2018-03-19 21:23:21 +01:00
c765f424ab
typo
2018-03-19 21:03:23 +01:00
