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mirror of https://github.com/msberends/AMR.git synced 2024-12-27 12:06:14 +01:00
Commit Graph

1363 Commits

Author SHA1 Message Date
24b12024ce unit test fix 2023-01-20 09:45:03 +01:00
593d740b84 documentation, file permissions 2023-01-19 12:54:53 +01:00
b94bc6c67b adding mo fixes 2023-01-14 19:50:25 +01:00
ca79068604 Fix for adding MO's 2023-01-14 17:10:10 +01:00
33f269e2f4 contrib update 2023-01-12 23:16:05 +01:00
51906d6f97 no overwriting taxonomy when adding microorganisms 2023-01-12 11:33:28 +01:00
1029aa2fdc algorithm improvement 2023-01-07 14:53:14 +01:00
08fe5a88c0 documentation 2023-01-07 01:54:46 +01:00
2375bfdcb5 documentation 2023-01-07 01:51:19 +01:00
84ed8c32bb documentation 2023-01-06 19:21:04 +01:00
cf16bc7de1 unit tests 2023-01-06 13:45:20 +01:00
86e28bafce add mo_pathogenicity 2023-01-06 13:35:37 +01:00
4801a6067e unit tests 2023-01-06 11:22:02 +01:00
8a0a0d4682 unit tests 2023-01-06 10:08:25 +01:00
268ec31d92 unit tests 2023-01-05 18:21:48 +01:00
5361c0b2a0 limit GitHub runners 2023-01-05 15:41:07 +01:00
51c0f0814e new setup unit tests 2023-01-05 15:03:18 +01:00
a98d0d75ea styler dep 2023-01-05 14:46:44 +01:00
a0ee86536a unit tests 2023-01-05 14:43:18 +01:00
77d9cf1936 documentation 2022-12-30 13:02:37 +01:00
e4ea96cbf9 fix for R < 3.4 2022-12-30 12:57:27 +01:00
1db74e86cd good start-up practice 2022-12-29 16:23:57 +01:00
61c0bdb7af documentation 2022-12-28 15:04:59 +01:00
ba3b237bdf custom mo update 2022-12-28 14:20:10 +01:00
fe09e9252b custom mo update 2022-12-27 16:03:03 +01:00
f619fb683b support new mo codes 2022-12-27 15:16:15 +01:00
e493248ea5 unit test and news file 2022-12-21 09:12:53 +01:00
4c42a43f7d fixes 2022-12-20 22:41:39 +01:00
6f4bb603ec unit tests 2022-12-20 22:18:50 +01:00
f0a2cdbf5e update mo algorithm 2022-12-20 16:14:04 +01:00
b1b7534c78 incorporate Bartlett et al (2022) 2022-12-19 15:32:41 +01:00
23fe427cbc Fixes for Salmonella 2022-12-17 14:31:33 +01:00
5f3a7694aa microorganisms update, added Salmonella groups 2022-12-16 16:10:43 +01:00
8da2467209 updated taxonomy 2022-12-12 00:14:56 +01:00
eed1c14b96 website update 2022-12-11 11:44:29 +01:00
b1ead9c0fe doc update 2022-12-10 10:09:57 +01:00
e7d7b94b3e no obligatory note on startup 2022-12-09 15:10:49 +01:00
56dad34e68 update prevalence with new phyla 2022-12-09 13:37:08 +01:00
ac55aa84de add news 2022-12-09 11:15:11 +01:00
510140fc55 Updated mo_gramstain() to reflect current taxonomy, fixes #83 2022-12-09 10:30:25 +01:00
Dr. Matthijs Berends
6017f81e74
Update README.md 2022-11-29 19:38:17 +01:00
ba51c2d92f add column to as.mic() and as.disk() warnings 2022-11-28 19:39:52 +01:00
31fb81c382 revised as.rsi(), fix for mdro() 2022-11-24 20:29:00 +01:00
05d536ebb7 complexes 2022-11-17 15:23:29 +01:00
f6862a139d expert rules 12.0 2022-11-14 15:20:39 +01:00
7ca44fb756 cleanup and new intro logo 2022-11-13 13:44:25 +01:00
Dr. Matthijs Berends
496c08d851
Implement extensive support for antiviral agents support (#77) 2022-11-13 08:46:10 +01:00
Dr. Matthijs Berends
d2edcf51ad
Update website.yaml 2022-11-12 12:10:33 +01:00
8d1679bab3 website update 2022-11-12 09:44:36 +01:00
af205e2705 update collabs 2022-11-10 22:07:35 +01:00